Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 4.8e-166 587.8 308 100.0
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 4.8e-166 587.8 308 100.0
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 4.8e-166 587.8 308 100.0
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 5.0e-163 577.8 308 98.1
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 2.5e-162 575.5 308 98.1
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 2.1e-145 519.2 308 88.6
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 1.4e-141 506.5 309 85.1
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 9.2e-141 503.8 308 85.7
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 9.2e-141 503.8 308 85.7
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 3.5e-140 501.9 306 85.6
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 6.0e-140 501.1 311 84.2
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 2.3e-139 499.2 312 84.6
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 1.8e-136 489.6 307 84.0
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 1.6e-132 476.5 308 82.8
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 2.0e-132 476.1 307 82.4
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 6.6e-131 471.1 306 81.4
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 1.9e-130 469.5 306 81.0
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 1.1e-125 453.8 306 79.1
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 6.6e-123 444.5 315 74.3
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 1.6e-113 413.3 309 72.2
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 5.4e-101 371.7 306 66.7
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 1.6e-100 370.2 320 62.8
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 3.5e-100 369.0 322 61.8
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 1.3e-97 360.5 336 59.8
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 1.6e-97 360.1 321 62.6
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 1.1e-96 357.5 319 60.5
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 4.0e-96 355.5 318 59.4
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 5.3e-96 355.1 320 60.9
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 5.3e-96 355.1 319 61.4
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 5.8e-95 351.7 323 60.1
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 7.6e-95 351.3 318 59.7
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 2.2e-94 349.7 319 58.9
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 2.2e-94 349.7 318 60.4
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 3.8e-94 349.0 322 60.6
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 3.8e-94 349.0 318 59.7
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 4.9e-94 348.6 319 58.9
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 1.9e-93 346.7 325 59.4
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 1.9e-93 346.7 324 57.7
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 3.2e-93 345.9 316 58.9
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 3.2e-93 345.9 325 60.0
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 4.2e-93 345.5 313 59.4
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.6e-92 343.6 319 58.3
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 1.6e-92 343.6 319 59.2
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 1.6e-92 343.6 320 60.9
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 2.1e-92 343.2 321 59.5
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 2.1e-92 343.2 317 57.7
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 2.1e-92 343.2 309 61.2
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 2.1e-92 343.2 323 58.5
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 2.1e-92 343.2 324 57.7
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 2.1e-92 343.2 322 59.0
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 2.7e-92 342.8 317 57.4
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 4.6e-92 342.0 313 60.4
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 6.0e-92 341.7 306 59.2
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 6.0e-92 341.7 324 56.8
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 7.9e-92 341.3 312 61.9
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.3e-91 340.5 319 58.9
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 1.3e-91 340.5 320 56.2
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 3.9e-91 339.0 325 57.5
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 8.7e-91 337.8 320 58.4
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 1.5e-90 337.0 321 58.3
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 1.5e-90 337.0 325 57.2
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 1.5e-90 337.0 319 58.6
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 2.5e-90 336.3 315 57.8
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 3.3e-90 335.9 316 57.0
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 4.3e-90 335.5 315 56.8
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 5.6e-90 335.1 341 54.8
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 5.6e-90 335.1 330 54.8
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 9.6e-90 334.3 310 57.4
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 1.3e-89 334.0 319 57.1
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 8.2e-89 331.3 316 57.9
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 1.1e-88 330.9 306 60.1
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 1.4e-88 330.5 320 58.8
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 3.4e-87 325.9 359 52.1
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 5.8e-87 325.1 315 56.5
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 1.0e-86 324.3 317 54.9
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 1.0e-86 324.3 326 55.8
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 1.3e-86 323.9 307 57.7
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 2.9e-86 322.8 377 51.5
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 3.2e-85 319.3 327 55.7
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 3.2e-85 319.3 311 55.9
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 5.5e-85 318.5 299 59.9
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 9.3e-85 317.8 333 53.8
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 3.5e-84 315.8 318 55.0
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 3.5e-84 315.8 318 55.0
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 4.6e-84 315.5 322 54.7
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 2.3e-83 313.2 322 55.0
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 3.0e-83 312.8 308 55.5
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 5.1e-83 312.0 325 54.2
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 2.5e-82 309.7 322 54.3
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 3.3e-82 309.3 318 54.7
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 7.4e-82 308.1 339 51.9
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 9.7e-82 307.8 375 50.7
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 2.2e-81 306.6 317 53.6
Sc01g0001280 Simmondsia chinensis HOM05D005174 ORTHO05D006784 1.8e-80 303.5 265 61.5
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.2e-78 296.6 311 53.4
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 2.7e-76 289.7 313 53.7
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 2.7e-76 289.7 310 51.3
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 2.7e-76 289.7 269 58.7
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 3.6e-76 289.3 312 53.5
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 3.6e-76 289.3 369 48.5
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 7.9e-76 288.1 299 54.8
Os02g0767700 Oryza sativa ssp. japonica HOM05D005174 ORTHO05D006784 3.3e-74 282.7 312 52.2
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 1.3e-73 280.8 326 50.0
Zm00001eb193560 Zea mays HOM05D005174 ORTHO05D006784 1.7e-73 280.4 315 49.8
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 1.8e-72 276.9 251 58.6
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 2.9e-70 269.6 202 69.3
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 9.7e-66 254.6 297 51.5
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.7e-62 243.8 355 45.1
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 7.2e-61 238.4 314 49.0
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 1.4e-59 234.2 286 48.6
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 3.9e-59 232.6 294 45.6
Mapoly0010s0001 Marchantia polymorpha HOM05D005174 ORTHO05D006784 5.2e-59 232.3 311 43.4
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 6.7e-59 231.9 317 46.4
Pp3c18_22250 Physcomitrium patens HOM05D005174 ORTHO05D006784 6.7e-59 231.9 309 44.7
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 2.9e-54 216.5 314 45.2
SEGI_02373 Sequoiadendron giganteum HOM05D005174 ORTHO05D006784 1.9e-53 213.8 274 46.4
Cre10.g425950 Chlamydomonas reinhardtii HOM05D005174 ORTHO05D006784 1.3e-46 191.0 178 51.7
HPP92_001042 Vanilla planifolia HOM05D005174 ORTHO05D006784 1.7e-46 190.7 321 39.9
Haze_00470 Corylus avellana HOM05D005174 ORTHO05D006784 3.4e-42 176.4 110 81.8
PRCOL_00005180 Prasinoderma coloniale HOM05D005174 ORTHO05D006784 4.1e-40 169.5 175 48.0
Hund16845 Selenicereus undatus HOM05D005174 ORTHO05D006784 7.5e-34 148.7 105 70.5
MD08G1166300 Malus domestica HOM05D005174 ORTHO05D006784 8.3e-33 145.2 110 66.4
Sabra15G0076900 Salix brachista HOM05D000453 ORTHO05D000387 3.1e-32 143.3 135 60.0
FAN20G0512 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.0e-31 140.6 262 37.8
Lj7A337T25 Lonicera japonica HOM05D005174 ORTHO05D006784 1.7e-30 137.5 176 45.5
SMO200G0142 Selaginella moellendorffii HOM05D000188 ORTHO05D007139 8.0e-28 128.6 224 37.5
Haze_00471 Corylus avellana HOM05D005174 ORTHO05D006784 4.1e-24 116.3 192 45.3
Ca_03754_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 2.9e-17 93.6 68 63.2
Sabra02G0067100 Salix brachista HOM05D005174 ORTHO05D006784 1.2e-15 88.2 361 27.4
arahy.Tifrunner.gnm1.ann1.032V6W Arachis hypogaea HOM05D005174 ORTHO05D015215 3.9e-14 83.2 46 84.8
arahy.Tifrunner.gnm1.ann1.PAU1NR Arachis hypogaea HOM05D005174 ORTHO05D015215 3.9e-14 83.2 46 84.8
arahy.Tifrunner.gnm1.ann1.RE5YQ2 Arachis hypogaea HOM05D005174 ORTHO05D015215 3.9e-14 83.2 46 84.8
Duzib041G0272 Durio zibethinus HOM05D005174 ORTHO05D015215 1.9e-13 80.9 54 74.1
arahy.Tifrunner.gnm1.ann1.S56SQA Arachis hypogaea HOM05D005174 ORTHO05D015215 2.5e-13 80.5 67 58.2
arahy.Tifrunner.gnm1.ann1.W2W6PZ Arachis hypogaea HOM05D005174 ORTHO05D015215 5.6e-13 79.3 45 82.2
Cfa010764 Carpinus fangiana HOM05D005174 ORTHO05D006784 5.6e-13 79.3 105 46.7
Potri.002G085700 Populus trichocarpa HOM05D005174 ORTHO05D050453 8.9e-11 72.0 54 66.7
Glyma.04G251502 Glycine max HOM05D005174 ORTHO05D006784 5.8e-10 69.3 114 41.2
arahy.Tifrunner.gnm1.ann1.9F26EH Arachis hypogaea HOM05D005174 ORTHO05D015215 4.1e-08 63.2 51 64.7
SEGI_30371 Sequoiadendron giganteum HOM05D005174 ORTHO05D050453 1.0e-06 58.5 53 56.6
Ca_03755_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 6.6e-06 55.8 102 38.2


User provided reference genes

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