Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g37223 Brassica carinata HOM05D007025 ORTHO05D008862 2.1e-41 171.8 80 100.0
A08p05760 Brassica napus HOM05D007025 ORTHO05D008862 2.1e-41 171.8 80 100.0
C08p06430 Brassica napus HOM05D007025 ORTHO05D008862 2.1e-41 171.8 80 100.0
BraA08t32579Z Brassica rapa HOM05D007025 ORTHO05D008862 2.1e-41 171.8 80 100.0
BcaB04g17532 Brassica carinata HOM05D007025 ORTHO05D008862 6.2e-41 170.2 80 98.8
Sp1g34420 Schrenkiella parvula HOM05D007025 ORTHO05D008862 8.4e-38 159.8 80 92.5
Thhalv10011908m.g Eutrema salsugineum HOM05D007025 ORTHO05D008862 7.2e-37 156.8 80 91.2
AL1G53430 Arabidopsis lyrata HOM05D007025 ORTHO05D008862 8.2e-33 143.3 81 84.0
AT1G47278 Arabidopsis thaliana HOM05D007025 ORTHO05D008862 8.2e-33 143.3 81 84.0
Carub.0001s3607 Capsella rubella HOM05D007025 ORTHO05D008862 1.4e-32 142.5 81 84.0
Aa31sc152G30 Aethionema arabicum HOM05D007025 ORTHO05D008862 1.7e-30 135.6 81 77.8
CARHR036850 Cardamine hirsuta HOM05D007025 ORTHO05D008862 2.5e-29 131.7 82 75.6
THA.LOC104810785 Tarenaya hassleriana HOM05D007025 ORTHO05D008862 4.2e-29 131.0 81 74.1
vmacro00530 Vaccinium macrocarpon HOM05D007025 ORTHO05D008862 3.9e-27 124.4 81 69.1
Cc01_g12710 Coffea canephora HOM05D007025 ORTHO05D008862 4.3e-26 120.9 81 71.6
Ciclev10003169m.g Citrus clementina HOM05D007025 ORTHO05D008862 7.4e-26 120.2 81 69.1
CiPaw.09G091100 Carya illinoinensis HOM05D007025 ORTHO05D008862 1.7e-25 119.0 81 67.9
Gohir.A03G041000 Gossypium hirsutum HOM05D007025 ORTHO05D008862 2.8e-25 118.2 81 67.9
RcHm_v2.0_Chr5g0006711 Rosa chinensis HOM05D007025 ORTHO05D008862 2.8e-25 118.2 80 67.5
RcHm_v2.0_Chr5g0063941 Rosa chinensis HOM05D007025 ORTHO05D008862 2.8e-25 118.2 80 67.5
FvH4_3g35770 Fragaria vesca HOM05D007025 ORTHO05D008862 4.8e-25 117.5 80 67.5
FAN11G3513 Fragaria x ananassa HOM05D007025 ORTHO05D008862 4.8e-25 117.5 80 67.5
FAN16G3493 Fragaria x ananassa HOM05D007025 ORTHO05D008862 4.8e-25 117.5 80 67.5
FAN25G2181 Fragaria x ananassa HOM05D007025 ORTHO05D008862 4.8e-25 117.5 80 67.5
Gohir.D03G127100 Gossypium hirsutum HOM05D007025 ORTHO05D008862 4.8e-25 117.5 81 66.7
Gorai.003G133500 Gossypium raimondii HOM05D007025 ORTHO05D008862 4.8e-25 117.5 81 66.7
QL06p002232 Quercus lobata HOM05D007025 ORTHO05D008862 4.8e-25 117.5 80 67.5
ClCG08G009640 Citrullus lanatus HOM05D007025 ORTHO05D008862 6.3e-25 117.1 81 66.7
Manes.04G033800 Manihot esculenta HOM05D007025 ORTHO05D008862 6.3e-25 117.1 81 65.4
CiPaw.13G095900 Carya illinoinensis HOM05D007025 ORTHO05D008862 8.2e-25 116.7 81 66.7
Solyc06g076010.3 Solanum lycopersicum HOM05D007025 ORTHO05D008862 8.2e-25 116.7 80 63.8
Sopen06g032420 Solanum pennellii HOM05D007025 ORTHO05D008862 8.2e-25 116.7 80 63.8
BolC8t47490H Brassica oleracea HOM05D007025 ORTHO05D008862 1.1e-24 116.3 53 100.0
PGR102G0249 Punica granatum HOM05D007025 ORTHO05D008862 1.1e-24 116.3 81 64.2
Thecc.09G323800 Theobroma cacao HOM05D007025 ORTHO05D008862 1.1e-24 116.3 81 64.2
QL10p005425 Quercus lobata HOM05D007025 ORTHO05D008862 1.4e-24 115.9 80 66.2
TAR374G1462 Trochodendron aralioides HOM05D007025 ORTHO05D008862 1.4e-24 115.9 81 66.7
Duzib168G1407 Durio zibethinus HOM05D007025 ORTHO05D008862 1.8e-24 115.5 81 65.4
TWI79G0521 Tripterygium wilfordii HOM05D007025 ORTHO05D008862 1.8e-24 115.5 81 63.0
CsaV3_6G031770 Cucumis sativus L. HOM05D007025 ORTHO05D008862 2.4e-24 115.2 81 65.4
CSS0049041 Camellia sinensis var. sinensis HOM05D007025 ORTHO05D008862 3.1e-24 114.8 81 65.4
FAN21G1635 Fragaria x ananassa HOM05D007025 ORTHO05D008862 3.1e-24 114.8 80 66.2
Nitab4.5_0004078g0030 Nicotiana tabacum HOM05D007025 ORTHO05D008862 3.1e-24 114.8 81 65.4
GSVIVG01024988001 Vitis vinifera HOM05D007025 ORTHO05D008862 3.1e-24 114.8 81 65.4
Nitab4.5_0001800g0060 Nicotiana tabacum HOM05D007025 ORTHO05D008862 5.3e-24 114.0 81 65.4
Eucgr.J02059 Eucalyptus grandis HOM05D007025 ORTHO05D008862 6.9e-24 113.6 81 64.2
Peaxi162Scf00406g00059 Petunia axillaris HOM05D007025 ORTHO05D008862 9.1e-24 113.2 81 64.2
Sed0024062 Sechium edule HOM05D007025 ORTHO05D008862 1.2e-23 112.8 81 64.2
Solyc11g066070.2 Solanum lycopersicum HOM05D007025 ORTHO05D008862 1.5e-23 112.5 81 64.2
Sopen11g025810 Solanum pennellii HOM05D007025 ORTHO05D008862 1.5e-23 112.5 81 64.2
PGSC0003DMG400000442 Solanum tuberosum HOM05D007025 ORTHO05D008862 1.5e-23 112.5 81 64.2
CAN.G764.4 Capsicum annuum HOM05D007025 ORTHO05D008862 2.0e-23 112.1 81 64.2
Cpa.g.sc840.2 Carica papaya HOM05D007025 ORTHO05D008862 2.0e-23 112.1 81 61.7
MELO3C026555.2 Cucumis melo HOM05D007025 ORTHO05D008862 2.0e-23 112.1 81 61.7
Hma1.2p1_1888F.1_g306550 Hydrangea macrophylla HOM05D007025 ORTHO05D008862 2.6e-23 111.7 81 63.0
Rhsim09G0044100 Rhododendron simsii HOM05D007025 ORTHO05D008862 2.6e-23 111.7 81 63.0
CiPaw.14G069900 Carya illinoinensis HOM05D007025 ORTHO05D008862 3.4e-23 111.3 81 64.2
Aqoxy1G00724 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 4.5e-23 110.9 81 66.7
COL.COLO4_20470 Corchorus olitorius HOM05D007025 ORTHO05D008862 4.5e-23 110.9 81 61.7
Prupe.6G079900 Prunus persica HOM05D007025 ORTHO05D008862 4.5e-23 110.9 81 63.0
unitig_749.g14331 Utricularia gibba HOM05D007025 ORTHO05D008862 5.9e-23 110.5 81 63.0
CANSAT54G1063 Cannabis sativa HOM05D007025 ORTHO05D008862 1.7e-22 109.0 80 60.0
Nn5g26960 Nelumbo nucifera HOM05D007025 ORTHO05D008862 2.9e-22 108.2 82 64.6
EL10Ac7g15997 Beta vulgaris HOM05D007025 ORTHO05D008862 3.8e-22 107.8 81 61.7
Haze_24077 Corylus avellana HOM05D007025 ORTHO05D008862 3.8e-22 107.8 80 62.5
Aqoxy7G01971 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 5.0e-22 107.5 81 64.2
arahy.Tifrunner.gnm1.ann1.UND1EB Arachis hypogaea HOM05D007025 ORTHO05D008862 5.0e-22 107.5 81 61.7
arahy.Tifrunner.gnm1.ann1.XVFR0N Arachis hypogaea HOM05D007025 ORTHO05D008862 6.5e-22 107.1 81 61.7
Cfa003375 Carpinus fangiana HOM05D007025 ORTHO05D008862 6.5e-22 107.1 81 63.0
Glyma.05G134100 Glycine max HOM05D007025 ORTHO05D008862 6.5e-22 107.1 81 61.7
Lsat_1_v5_gn_2_83821 Lactuca sativa HOM05D007025 ORTHO05D008862 6.5e-22 107.1 81 58.0
Lsat_1_v5_gn_5_79400 Lactuca sativa HOM05D007025 ORTHO05D008862 8.5e-22 106.7 81 58.0
SGA_v2.0_scaffold118G32439 Striga asiatica HOM05D007025 ORTHO05D008862 8.5e-22 106.7 82 61.0
Glyma.08G088800 Glycine max HOM05D007025 ORTHO05D008862 1.9e-21 105.5 81 60.5
Hund04979 Selenicereus undatus HOM05D007025 ORTHO05D008862 2.5e-21 105.1 81 61.7
Phvul.002G188200 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 4.2e-21 104.4 81 60.5
ATR0800G159 Amborella trichopoda HOM05D007025 ORTHO05D008862 7.2e-21 103.6 79 59.5
CDE11G0504 Ceratophyllum demersum HOM05D007025 ORTHO05D008862 9.4e-21 103.2 81 61.7
Migut.C01196 Erythranthe guttata HOM05D007025 ORTHO05D008862 3.6e-20 101.3 81 59.3
Atru.chr3.3859 Acer truncatum HOM05D007025 ORTHO05D008862 6.1e-20 100.5 81 55.6
Lj1g0011371 Lotus japonicus HOM05D007025 ORTHO05D008862 6.1e-20 100.5 81 59.3
Lj4g0013158 Lotus japonicus HOM05D007025 ORTHO05D008862 6.1e-20 100.5 81 59.3
Phvul.007G101100 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 6.1e-20 100.5 81 59.3
Os03g0276700 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 1.4e-19 99.4 79 60.8
ECA238G2407 Erigeron canadensis HOM05D007025 ORTHO05D008862 3.0e-19 98.2 81 54.3
Medtr4g094750 Medicago truncatula HOM05D007025 ORTHO05D008862 3.0e-19 98.2 81 55.6
Psat7g087480 Pisum sativum HOM05D007025 ORTHO05D008862 3.0e-19 98.2 81 55.6
Os08g0422300 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 3.9e-19 97.8 79 62.0
PSO384G2653 Papaver somniferum HOM05D007025 ORTHO05D008862 6.7e-19 97.1 81 56.8
Lalb_Chr12g0209151 Lupinus albus HOM05D007025 ORTHO05D008862 1.5e-18 95.9 81 55.6
Lalb_Chr12g0209181 Lupinus albus HOM05D007025 ORTHO05D008862 7.4e-18 93.6 81 54.3
TPR.G23830 Trifolium pratense HOM05D007025 ORTHO05D008862 1.3e-17 92.8 79 55.7
SalBow5G5439 Salvia bowleyana HOM05D007025 ORTHO05D008862 3.7e-17 91.3 76 55.3
SHI05954 Sapria himalayana HOM05D007025 ORTHO05D008862 8.2e-17 90.1 78 47.4
PGSC0003DMG400030317 Solanum tuberosum HOM05D007025 ORTHO05D008862 3.5e-15 84.7 54 66.7
FAN24G0628 Fragaria x ananassa HOM05D007025 ORTHO05D008862 2.9e-14 81.6 57 63.2
Potri.009G029400 Populus trichocarpa HOM05D007025 ORTHO05D008862 5.0e-14 80.9 81 48.1
unitig_26.g9279 Utricularia gibba HOM05D007025 ORTHO05D008862 6.5e-14 80.5 55 61.8
MBI05_g06554_MAGBIO Magnolia biondii HOM05D007025 ORTHO05D008862 4.2e-13 77.8 72 48.6
Lj1A680T12 Lonicera japonica HOM05D007025 ORTHO05D008862 5.5e-13 77.4 59 61.0
MD11G1111500 Malus domestica HOM05D007025 ORTHO05D008862 9.4e-13 76.6 59 64.4
Mapoly0032s0020 Marchantia polymorpha HOM05D007025 ORTHO05D008862 1.2e-12 76.3 79 44.3
HanXRQChr14g0439311 Helianthus annuus HOM05D007025 ORTHO05D008862 2.1e-12 75.5 77 46.8
MD02G1271300 Malus domestica HOM05D007025 ORTHO05D008862 4.7e-12 74.3 59 62.7
Pp3c21_6850 Physcomitrium patens HOM05D007025 ORTHO05D008862 1.4e-11 72.8 79 44.3
AagrBONN_evm.TU.Sc2ySwM_344.5329 Anthoceros agrestis HOM05D007025 ORTHO05D008862 3.3e-10 68.2 76 43.4
MD02G1271100 Malus domestica HOM05D007025 ORTHO05D008862 1.8e-08 62.4 45 60.0
COL.COLO4_18491 Corchorus olitorius HOM05D007025 ORTHO05D008862 3.5e-07 58.2 77 41.6
AUR62001808 Chenopodium quinoa HOM05D002150 ORTHO05D002191 2.2e-06 55.5 42 61.9
AUR62009594 Chenopodium quinoa HOM05D007025 ORTHO05D002191 2.2e-06 55.5 42 61.9
SEGI_34612 Sequoiadendron giganteum HOM05D007025 ORTHO05D008862 5.0e-06 54.3 81 38.3
SGA_v2.0_scaffold24G10508 Striga asiatica HOM05D007025 ORTHO05D008862 6.5e-06 53.9 40 60.0


User provided reference genes

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