Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g37166 Brassica carinata HOM05D004768 ORTHO05D005812 5.3e-107 391.7 323 100.0
Sp4g05920 Schrenkiella parvula HOM05D004768 ORTHO05D005812 1.6e-39 167.5 305 71.8
A08p05150 Brassica napus HOM05D004768 ORTHO05D005812 4.0e-38 162.9 303 57.1
BcaB08g35238 Brassica carinata HOM05D004768 ORTHO05D005812 9.9e-37 158.3 273 75.8
Thhalv10002028m.g Eutrema salsugineum HOM05D004768 ORTHO05D005812 4.9e-36 156.0 303 70.6
BolC8t47355H Brassica oleracea HOM05D004768 ORTHO05D005812 1.2e-34 151.4 262 41.6
THA.LOC104816391 Tarenaya hassleriana HOM05D004768 ORTHO05D005812 1.5e-32 144.4 271 72.7
AT2G26060 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 5.6e-32 142.5 273 74.7
AL4G18210 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 1.3e-31 141.4 272 74.3
Cpa.g.sc5.22 Carica papaya HOM05D004768 ORTHO05D005812 1.6e-31 141.0 271 60.9
Carub.0004s0588 Capsella rubella HOM05D004768 ORTHO05D005812 1.8e-30 137.5 278 70.5
ClCG10G018990 Citrullus lanatus HOM05D004768 ORTHO05D005812 2.4e-30 137.1 271 72.3
COL.COLO4_29739 Corchorus olitorius HOM05D004768 ORTHO05D005812 3.1e-30 136.7 271 69.0
Aa31sc210G50 Aethionema arabicum HOM05D004768 ORTHO05D005812 4.0e-30 136.3 280 57.1
RcHm_v2.0_Chr3g0473611 Rosa chinensis HOM05D004768 ORTHO05D005812 6.9e-30 135.6 271 69.0
Thecc.05G088700 Theobroma cacao HOM05D004768 ORTHO05D005812 9.0e-30 135.2 269 71.4
Sed0028141 Sechium edule HOM05D004768 ORTHO05D005812 3.4e-29 133.3 278 68.7
Lj2A136G54 Lonicera japonica HOM05D004768 ORTHO05D005812 4.5e-29 132.9 271 70.5
CiPaw.10G009400 Carya illinoinensis HOM05D004768 ORTHO05D005812 7.6e-29 132.1 293 66.2
Ciclev10012077m.g Citrus clementina HOM05D004768 ORTHO05D005812 7.6e-29 132.1 271 58.3
CiPaw.09G013600 Carya illinoinensis HOM05D004768 ORTHO05D005812 1.3e-28 131.3 271 69.7
FvH4_6g18650 Fragaria vesca HOM05D004768 ORTHO05D005812 1.3e-28 131.3 271 67.9
Manes.09G055600 Manihot esculenta HOM05D004768 ORTHO05D005812 1.7e-28 131.0 271 71.2
Gohir.A01G206500 Gossypium hirsutum HOM05D004768 ORTHO05D005812 2.2e-28 130.6 271 71.2
Gorai.002G240100 Gossypium raimondii HOM05D004768 ORTHO05D005812 2.2e-28 130.6 271 71.2
TWI77G0792 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 2.2e-28 130.6 271 71.6
Gohir.D01G195900 Gossypium hirsutum HOM05D004768 ORTHO05D005812 6.4e-28 129.0 271 70.8
TWI74G0982 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 1.1e-27 128.3 271 70.8
CANSAT78G2462 Cannabis sativa HOM05D004768 ORTHO05D005812 1.4e-27 127.9 271 59.0
CSS0047457 Camellia sinensis var. sinensis HOM05D004768 ORTHO05D005812 1.9e-27 127.5 271 70.8
FAN09G1393 Fragaria x ananassa HOM05D004768 ORTHO05D005812 1.9e-27 127.5 278 56.1
FAN05G3800 Fragaria x ananassa HOM05D004768 ORTHO05D005812 2.4e-27 127.1 278 55.8
FAN05G5395 Fragaria x ananassa HOM05D004768 ORTHO05D005812 2.4e-27 127.1 278 55.8
Ca_09003_v3 Cicer arietinum L. HOM05D004768 ORTHO05D005812 4.2e-27 126.3 280 70.0
Prupe.7G110600 Prunus persica HOM05D004768 ORTHO05D005812 5.5e-27 125.9 271 66.8
Potri.002G212800 Populus trichocarpa HOM05D004768 ORTHO05D005812 7.1e-27 125.6 283 67.8
Sed0006419 Sechium edule HOM05D004768 ORTHO05D005812 7.1e-27 125.6 271 68.6
MD12G1035900 Malus domestica HOM05D004768 ORTHO05D005812 1.2e-26 124.8 271 69.0
Potri.001G221000 Populus trichocarpa HOM05D004768 ORTHO05D005812 1.6e-26 124.4 279 63.8
CsaV3_3G037260 Cucumis sativus L. HOM05D004768 ORTHO05D005812 2.1e-26 124.0 266 71.4
FAN02G2744 Fragaria x ananassa HOM05D004768 ORTHO05D005812 2.1e-26 124.0 271 67.9
PGR142G0725 Punica granatum HOM05D004768 ORTHO05D005812 2.1e-26 124.0 271 63.5
Actinidia05433 Actinidia chinensis HOM05D004768 ORTHO05D005812 4.6e-26 122.9 277 70.4
Atru.chr8.1546 Acer truncatum HOM05D004768 ORTHO05D005812 6.0e-26 122.5 277 56.7
Eucgr.K02044 Eucalyptus grandis HOM05D004768 ORTHO05D005812 7.9e-26 122.1 271 70.5
MD14G1022600 Malus domestica HOM05D004768 ORTHO05D005812 7.9e-26 122.1 269 68.8
Oeu047201.1 Olea europaea HOM05D004768 ORTHO05D005812 7.9e-26 122.1 271 64.6
Hma1.2p1_0084F.1_g043770 Hydrangea macrophylla HOM05D004768 ORTHO05D005812 1.3e-25 121.3 271 69.7
Manes.08G025000 Manihot esculenta HOM05D004768 ORTHO05D005812 3.0e-25 120.2 264 64.8
Rhsim03G0075500 Rhododendron simsii HOM05D004768 ORTHO05D005812 3.9e-25 119.8 262 72.5
Cc06_g05720 Coffea canephora HOM05D004768 ORTHO05D005812 5.1e-25 119.4 271 73.1
Glyma.03G195400 Glycine max HOM05D004768 ORTHO05D005812 6.7e-25 119.0 266 69.5
Carub.0007s0749 Capsella rubella HOM05D004768 ORTHO05D005812 1.1e-24 118.2 271 63.1
Psat3g033480 Pisum sativum HOM05D004768 ORTHO05D005812 1.1e-24 118.2 266 70.3
Duzib128G0567 Durio zibethinus HOM05D004768 ORTHO05D005812 1.5e-24 117.9 250 64.0
Sc02g0000880 Simmondsia chinensis HOM05D004768 ORTHO05D005812 1.5e-24 117.9 271 70.8
MSTRG.10364 Avicennia marina HOM05D004768 ORTHO05D005812 2.5e-24 117.1 269 69.1
Medtr7g104550 Medicago truncatula HOM05D004768 ORTHO05D005812 2.5e-24 117.1 280 68.9
Phvul.001G190000 Phaseolus vulgaris HOM05D004768 ORTHO05D005812 9.6e-24 115.2 266 69.5
QL07p038809 Quercus lobata HOM05D004768 ORTHO05D005812 9.6e-24 115.2 271 67.9
QL07p039071 Quercus lobata HOM05D004768 ORTHO05D005812 9.6e-24 115.2 271 67.9
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 1.6e-23 114.4 271 67.2
VMungo1383G3473 Vigna mungo HOM05D004768 ORTHO05D005812 1.6e-23 114.4 266 69.5
Lsat_1_v5_gn_8_77061 Lactuca sativa HOM05D004768 ORTHO05D005812 2.1e-23 114.0 271 68.3
Lalb_Chr20g0111731 Lupinus albus HOM05D004768 ORTHO05D005812 2.1e-23 114.0 266 69.2
Aqoxy2G01203 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 2.8e-23 113.6 272 68.8
MELO3C009471.2 Cucumis melo HOM05D004768 ORTHO05D005812 4.8e-23 112.8 248 62.5
arahy.Tifrunner.gnm1.ann1.F6QZS0 Arachis hypogaea HOM05D004768 ORTHO05D005812 6.2e-23 112.5 266 68.4
arahy.Tifrunner.gnm1.ann1.UHNL6N Arachis hypogaea HOM05D004768 ORTHO05D005812 6.2e-23 112.5 266 68.0
TAR633G0463 Trochodendron aralioides HOM05D004768 ORTHO05D005812 6.2e-23 112.5 256 65.2
AL7G18690 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 8.2e-23 112.1 271 64.9
SGA_v2.0_scaffold184G39961 Striga asiatica HOM05D004768 ORTHO05D005812 1.1e-22 111.7 269 66.2
EL10Ac4g08441 Beta vulgaris HOM05D004768 ORTHO05D005812 2.4e-22 110.5 266 71.4
SalBow7G2666 Salvia bowleyana HOM05D004768 ORTHO05D005812 5.3e-22 109.4 269 66.2
TPR.G19532 Trifolium pratense HOM05D004768 ORTHO05D005812 6.9e-22 109.0 259 60.2
AUR62017616 Chenopodium quinoa HOM05D004768 ORTHO05D005812 9.0e-22 108.6 275 70.2
Lj1g0007409 Lotus japonicus HOM05D004768 ORTHO05D005812 2.0e-21 107.5 266 68.0
Aa31LG5G9700 Aethionema arabicum HOM05D004768 ORTHO05D005812 3.4e-21 106.7 290 65.2
Lsat_1_v5_gn_5_164801 Lactuca sativa HOM05D004768 ORTHO05D005812 3.4e-21 106.7 271 65.3
PSO384G2514 Papaver somniferum HOM05D004768 ORTHO05D005812 3.4e-21 106.7 278 65.5
ATR0776G063 Amborella trichopoda HOM05D004768 ORTHO05D005812 5.8e-21 105.9 264 68.2
Solyc09g074400.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 5.8e-21 105.9 271 67.5
Sopen09g029240 Solanum pennellii HOM05D004768 ORTHO05D005812 7.6e-21 105.5 271 67.5
HanXRQChr01g0001951 Helianthus annuus HOM05D004768 ORTHO05D005812 1.0e-20 105.1 271 64.6
PSO339G5247 Papaver somniferum HOM05D004768 ORTHO05D005812 1.3e-20 104.8 278 65.1
C08p05390 Brassica napus HOM05D004768 ORTHO05D005812 1.7e-20 104.4 274 38.3
PSO229G0127 Papaver somniferum HOM05D004768 ORTHO05D005812 1.7e-20 104.4 279 54.1
HanXRQChr05g0133111 Helianthus annuus HOM05D004768 ORTHO05D005812 2.2e-20 104.0 271 67.9
Sabra16G0131600 Salix brachista HOM05D004768 ORTHO05D000138 2.2e-20 104.0 291 47.8
BraA08t32532Z Brassica rapa HOM05D004768 ORTHO05D005812 2.9e-20 103.6 80 67.5
Nitab4.5_0001107g0160 Nicotiana tabacum HOM05D004768 ORTHO05D005812 3.8e-20 103.2 252 72.6
vmacro07406 Vaccinium macrocarpon HOM05D004768 ORTHO05D005812 8.4e-20 102.1 312 61.2
Migut.L01777 Erythranthe guttata HOM05D004768 ORTHO05D005812 1.4e-19 101.3 271 66.4
MSTRG.26639 Avicennia marina HOM05D004768 ORTHO05D005812 4.2e-19 99.8 262 67.2
C08p38320 Brassica napus HOM05D004768 ORTHO05D005812 9.3e-19 98.6 315 47.6
CARHR241000 Cardamine hirsuta HOM05D004768 ORTHO05D005812 1.6e-18 97.8 266 48.1
FAN14G4330 Fragaria x ananassa HOM05D004768 ORTHO05D005812 2.1e-18 97.4 278 52.2
BolC8t51408H Brassica oleracea HOM05D004768 ORTHO05D005812 4.6e-18 96.3 315 47.3
EL10Ac4g08444 Beta vulgaris HOM05D004768 ORTHO05D005812 1.8e-17 94.4 266 28.9
Dinv21211 Davidia involucrata HOM05D004768 ORTHO05D005812 2.3e-17 94.0 48 85.4
Dinv31684 Davidia involucrata HOM05D004768 ORTHO05D005812 3.0e-17 93.6 48 85.4
TWI53G2067 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 3.9e-17 93.2 49 85.7
Os07g0252000 Oryza sativa ssp. japonica HOM05D004768 ORTHO05D005812 5.1e-17 92.8 274 56.6
A09p55390 Brassica napus HOM05D004768 ORTHO05D005812 8.7e-17 92.0 237 58.2
BraA09t40941Z Brassica rapa HOM05D004768 ORTHO05D005812 8.7e-17 92.0 237 58.2
PGSC0003DMG400016841 Solanum tuberosum HOM05D004768 ORTHO05D005812 8.7e-17 92.0 48 85.4
Peaxi162Scf00290g00062 Petunia axillaris HOM05D004768 ORTHO05D005812 1.1e-16 91.7 279 62.0
SEGI_40271 Sequoiadendron giganteum HOM05D004768 ORTHO05D005812 1.1e-16 91.7 48 83.3
BcaC07g40836 Brassica carinata HOM05D004768 ORTHO05D005812 1.5e-16 91.3 315 58.7
CDE02G3328 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 1.5e-16 91.3 248 29.0
DCAR_009163 Daucus carota HOM05D004768 ORTHO05D005812 1.5e-16 91.3 60 70.0
Nitab4.5_0003550g0050 Nicotiana tabacum HOM05D004768 ORTHO05D005812 1.9e-16 90.9 48 85.4
HPP92_013808 Vanilla planifolia HOM05D004768 ORTHO05D005812 1.9e-16 90.9 270 54.1
Sabra16G0123600 Salix brachista HOM05D000102 ORTHO05D005812 2.5e-16 90.5 48 81.2
Ah.01g002000 Amaranthus hybridus HOM05D000289 ORTHO05D000208 5.7e-16 89.4 48 81.2
Oeu056927.1 Olea europaea HOM05D004768 ORTHO05D005812 7.4e-16 89.0 48 83.3
Haze_19607 Corylus avellana HOM05D004768 ORTHO05D005812 1.6e-15 87.8 48 77.1
Hund03983 Selenicereus undatus HOM05D004768 ORTHO05D005812 2.2e-15 87.4 47 80.9
CDE08G0455 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 1.2e-13 81.6 48 72.9
unitig_746.g26778 Utricularia gibba HOM05D004768 ORTHO05D005812 1.5e-13 81.3 277 61.7
AagrBONN_evm.TU.Sc2ySwM_344.1733 Anthoceros agrestis HOM05D004768 ORTHO05D005812 4.5e-13 79.7 50 70.0
TAR636G3610 Trochodendron aralioides HOM05D004768 ORTHO05D005812 1.1e-11 75.1 39 87.2
GSVIVG01033839001 Vitis vinifera HOM05D004768 ORTHO05D005812 1.4e-11 74.7 136 60.3
BcaC01g04899 Brassica carinata HOM05D004768 ORTHO05D005812 3.2e-11 73.6 112 42.0
BolC3t15591H Brassica oleracea HOM05D000416 ORTHO05D000322 1.4e-09 68.2 127 61.4
Potri.014G136700 Populus trichocarpa HOM05D004768 ORTHO05D005812 1.4e-09 68.2 43 72.1
Oeu009219.1 Olea europaea HOM05D004768 ORTHO05D005812 1.9e-08 64.3 35 80.0
CARHR114770 Cardamine hirsuta HOM05D004768 ORTHO05D005812 2.5e-08 63.9 61 60.7
CARHR262780 Cardamine hirsuta HOM05D004768 ORTHO05D005812 4.3e-08 63.2 63 58.7
Zm00001eb304430 Zea mays HOM05D004768 ORTHO05D005812 5.7e-08 62.8 275 40.0
Cre08.g374400 Chlamydomonas reinhardtii HOM05D004768 ORTHO05D005812 1.3e-07 61.6 52 50.0
Pp3c21_14500 Physcomitrium patens HOM05D004768 ORTHO05D005812 3.7e-07 60.1 113 34.5
Potri.001G221150 Populus trichocarpa HOM05D004768 ORTHO05D005812 3.7e-07 60.1 55 56.4
SMO239G0020 Selaginella moellendorffii HOM05D004768 ORTHO05D005812 3.1e-06 57.0 39 59.0


User provided reference genes

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