Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 1.0e-193 679.9 332 100.0
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 5.7e-112 408.3 556 46.4
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 3.7e-111 405.6 556 46.2
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 3.7e-111 405.6 556 46.0
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 8.2e-111 404.4 556 46.2
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 8.2e-111 404.4 556 46.2
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 3.1e-110 402.5 556 46.2
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 1.2e-109 400.6 556 45.9
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 4.5e-109 398.7 568 45.4
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 2.7e-106 389.4 568 44.9
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 6.1e-106 388.3 563 44.9
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 6.7e-105 384.8 568 44.7
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 8.2e-103 377.9 303 69.6
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 8.2e-103 377.9 303 69.6
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 1.1e-102 377.5 568 43.8
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 2.0e-101 373.2 568 44.0
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 7.7e-85 318.2 564 39.0
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 5.5e-83 312.0 564 37.9
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 2.1e-82 310.1 222 73.9
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 1.7e-76 290.4 541 37.0
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 8.0e-74 281.6 591 34.3
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 1.0e-73 281.2 569 35.0
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 4.0e-73 279.3 565 34.7
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 5.2e-73 278.9 388 45.4
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 8.8e-73 278.1 566 34.8
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 1.2e-72 277.7 564 35.1
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 7.5e-72 275.0 567 34.9
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 1.3e-71 274.2 564 33.7
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 2.2e-71 273.5 567 34.9
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 1.1e-70 271.2 593 33.9
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 2.4e-70 270.0 569 34.3
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 3.1e-70 269.6 549 35.0
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 3.1e-70 269.6 565 33.8
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 4.1e-70 269.2 589 33.8
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 1.6e-69 267.3 589 33.6
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 1.6e-69 267.3 589 33.8
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 1.6e-69 267.3 589 33.3
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 3.5e-69 266.2 565 33.8
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 4.5e-69 265.8 567 33.5
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 4.5e-69 265.8 567 33.5
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 4.5e-69 265.8 562 33.6
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 5.9e-69 265.4 589 33.4
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 7.7e-69 265.0 561 34.2
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 7.7e-69 265.0 225 59.6
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 7.7e-69 265.0 589 33.6
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 7.7e-69 265.0 224 61.2
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 1.0e-68 264.6 589 32.8
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 1.3e-68 264.2 589 33.6
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 1.3e-68 264.2 565 34.7
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 2.9e-68 263.1 565 33.8
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 3.8e-68 262.7 565 34.5
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 5.0e-68 262.3 568 33.6
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 6.5e-68 261.9 562 32.9
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 8.6e-68 261.5 558 33.5
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 1.5e-67 260.8 226 58.8
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 1.5e-67 260.8 570 33.3
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 2.5e-67 260.0 562 33.6
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 4.2e-67 259.2 517 34.0
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 5.5e-67 258.8 330 44.8
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 5.5e-67 258.8 557 32.9
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 9.5e-67 258.1 560 33.4
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 9.5e-67 258.1 565 33.8
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 1.2e-66 257.7 267 50.6
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 1.6e-66 257.3 265 52.5
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 2.8e-66 256.5 564 34.0
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 3.6e-66 256.1 226 57.1
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 4.7e-66 255.8 565 32.6
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 4.7e-66 255.8 226 59.7
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 8.0e-66 255.0 267 50.2
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 1.4e-65 254.2 566 33.7
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 1.4e-65 254.2 561 32.6
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 1.8e-65 253.8 564 31.9
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 2.3e-65 253.4 565 31.9
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 3.0e-65 253.1 565 31.9
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 5.2e-65 252.3 568 32.4
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 6.8e-65 251.9 226 56.2
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 2.6e-64 250.0 561 32.6
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 4.4e-64 249.2 567 32.8
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 9.8e-64 248.1 562 32.7
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 3.7e-63 246.1 561 32.1
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 6.3e-63 245.4 562 32.0
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 8.3e-63 245.0 563 33.0
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 1.8e-62 243.8 563 32.0
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 2.4e-62 243.4 554 32.9
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 2.4e-62 243.4 566 31.8
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 3.1e-62 243.0 561 31.0
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 4.1e-62 242.7 561 31.7
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 5.4e-62 242.3 539 33.2
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 7.0e-62 241.9 224 54.9
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 1.2e-61 241.1 556 31.8
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 2.0e-61 240.4 560 31.6
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 3.5e-61 239.6 563 32.5
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 5.9e-61 238.8 227 57.3
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 1.0e-60 238.0 275 49.8
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 1.0e-60 238.0 256 50.4
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 3.8e-60 236.1 223 54.7
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 5.0e-60 235.7 251 51.4
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 5.6e-59 232.3 564 31.4
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 8.0e-58 228.4 263 51.0
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 1.0e-57 228.0 537 32.6
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 8.9e-57 224.9 263 49.8
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 2.6e-56 223.4 224 52.2
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 3.4e-56 223.0 249 51.8
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 2.7e-53 213.4 221 51.6
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 7.8e-53 211.8 231 49.4
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 1.0e-52 211.5 145 75.9
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.3e-51 206.5 242 44.6
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 9.8e-48 194.9 205 49.8
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 5.0e-44 182.6 244 41.8
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 6.6e-44 182.2 242 43.0
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 9.5e-43 178.3 260 38.5
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 3.9e-36 156.4 427 31.1
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 1.6e-26 124.4 99 66.7
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 6.9e-25 119.0 169 42.0
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 5.8e-24 115.9 108 60.2
Sp1g36390 Schrenkiella parvula HOM05D004962 ORTHO05D006249 5.8e-24 115.9 101 63.4
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 8.4e-23 112.1 101 61.4
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 9.3e-22 108.6 287 30.7
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 6.0e-21 105.9 229 33.6
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 1.1e-19 101.7 102 51.0
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 8.1e-18 95.5 69 62.3
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 6.9e-17 92.4 72 56.9
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.1e-14 85.1 106 44.3
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 1.4e-14 84.7 87 47.1
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 2.3e-12 77.4 170 36.5
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 4.8e-10 69.7 45 71.1
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 9.0e-09 65.5 60 55.0
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 9.0e-09 65.5 169 33.7
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 2.6e-08 63.9 73 45.2
CsaV3_4G034460 Cucumis sativus L. HOM05D002332 ORTHO05D002509 4.9e-07 59.7 154 29.2
MELO3C016764.2 Cucumis melo HOM05D002332 ORTHO05D002509 2.5e-06 57.4 154 28.6
Sabra15G0110600 Salix brachista HOM05D000464 ORTHO05D000408 4.2e-06 56.6 208 25.5
Sed0026906 Sechium edule HOM05D002332 ORTHO05D002509 7.1e-06 55.8 154 28.6
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 7.1e-06 55.8 32 59.4


User provided reference genes

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