Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g36990 Brassica carinata HOM05D006871 ORTHO05D008544 2.1e-85 318.9 157 100.0
C08p00260 Brassica napus HOM05D006871 ORTHO05D008544 4.0e-84 314.7 157 98.1
BolC8t46828H Brassica oleracea HOM05D006871 ORTHO05D008544 4.0e-84 314.7 157 98.1
Sp1g01860 Schrenkiella parvula HOM05D006871 ORTHO05D008544 2.4e-76 288.9 157 92.4
BcaC05g24587 Brassica carinata HOM05D006871 ORTHO05D008544 9.9e-75 283.5 155 91.0
C05p01490 Brassica napus HOM05D006871 ORTHO05D008544 9.9e-75 283.5 155 91.0
BolC5t28931H Brassica oleracea HOM05D006871 ORTHO05D008544 9.9e-75 283.5 155 91.0
BraA10t42428Z Brassica rapa HOM05D006871 ORTHO05D008544 2.9e-74 282.0 155 90.3
BcaB03g15758 Brassica carinata HOM05D006871 ORTHO05D008544 1.4e-73 279.6 153 90.8
A10p01520 Brassica napus HOM05D006871 ORTHO05D008544 3.2e-73 278.5 155 89.0
Thhalv10008837m.g Eutrema salsugineum HOM05D006871 ORTHO05D008544 6.0e-72 274.2 155 87.7
AT1G02870 Arabidopsis thaliana HOM05D006871 ORTHO05D008544 3.0e-71 271.9 154 87.7
AL1G12280 Arabidopsis lyrata HOM05D006871 ORTHO05D008544 3.9e-71 271.6 155 87.7
CARHR002210 Cardamine hirsuta HOM05D006871 ORTHO05D008544 1.9e-70 269.2 157 83.4
Carub.0001s0199 Capsella rubella HOM05D006871 ORTHO05D008544 3.1e-68 261.9 155 84.5
Aa31LG1G9720 Aethionema arabicum HOM05D006871 ORTHO05D008544 4.5e-67 258.1 155 83.2
THA.LOC104815930 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 5.0e-58 228.0 155 71.6
THA.LOC104801274 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 5.1e-55 218.0 154 66.2
Cpa.g.sc9.224 Carica papaya HOM05D000121 ORTHO05D000102 2.5e-49 199.1 153 66.0
vmacro02459 Vaccinium macrocarpon HOM05D006871 ORTHO05D008544 3.2e-49 198.7 151 64.2
Rhsim13G0011300 Rhododendron simsii HOM05D000121 ORTHO05D000102 7.2e-49 197.6 151 64.2
CSS0020652 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 3.6e-48 195.3 152 62.5
CSS0035923 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 3.6e-48 195.3 152 62.5
Cfa005931 Carpinus fangiana HOM05D006871 ORTHO05D008544 3.6e-48 195.3 158 63.9
Atru.chr5.1162 Acer truncatum HOM05D006871 ORTHO05D008544 3.9e-47 191.8 154 59.1
Haze_04913 Corylus avellana HOM05D006871 ORTHO05D008544 6.7e-47 191.0 155 63.2
Duzib133G1442 Durio zibethinus HOM05D006871 ORTHO05D008544 5.7e-46 188.0 148 64.2
Potri.014G130400 Populus trichocarpa HOM05D006871 ORTHO05D008544 7.4e-46 187.6 150 64.0
Sc05g0003970 Simmondsia chinensis HOM05D006871 ORTHO05D008544 7.4e-46 187.6 148 62.2
Duzib138G1907 Durio zibethinus HOM05D006871 ORTHO05D008544 1.3e-45 186.8 149 61.7
Gohir.A08G101400 Gossypium hirsutum HOM05D006871 ORTHO05D008544 1.3e-45 186.8 152 62.5
Actinidia32224 Actinidia chinensis HOM05D006871 ORTHO05D008544 1.7e-45 186.4 151 62.9
PGR119G1195 Punica granatum HOM05D006871 ORTHO05D008544 1.7e-45 186.4 148 60.8
PGR119G1688 Punica granatum HOM05D006871 ORTHO05D008544 1.7e-45 186.4 148 60.8
Gohir.D08G084900 Gossypium hirsutum HOM05D006871 ORTHO05D008544 2.8e-45 185.7 152 62.5
HanXRQChr06g0163831 Helianthus annuus HOM05D006871 ORTHO05D008544 2.8e-45 185.7 149 65.1
Lsat_1_v5_gn_8_53460 Lactuca sativa HOM05D006871 ORTHO05D008544 2.8e-45 185.7 149 64.4
Thecc.01G298700 Theobroma cacao HOM05D006871 ORTHO05D008544 2.8e-45 185.7 149 63.1
Ciclev10022428m.g Citrus clementina HOM05D006871 ORTHO05D008544 3.7e-45 185.3 153 60.1
CiPaw.07G107300 Carya illinoinensis HOM05D006871 ORTHO05D008544 6.3e-45 184.5 149 62.4
Sabra14G0097000 Salix brachista HOM05D006871 ORTHO05D008544 6.3e-45 184.5 150 62.7
Dinv33046 Davidia involucrata HOM05D006871 ORTHO05D008544 8.2e-45 184.1 148 62.2
Manes.05G063100 Manihot esculenta HOM05D006871 ORTHO05D008544 8.2e-45 184.1 151 61.6
TWI14G0013 Tripterygium wilfordii HOM05D006871 ORTHO05D008544 1.8e-44 183.0 148 63.5
COL.COLO4_23360 Corchorus olitorius HOM05D006871 ORTHO05D008544 2.4e-44 182.6 142 65.5
Oeu032105.1 Olea europaea HOM05D006871 ORTHO05D008544 2.4e-44 182.6 154 61.0
GSVIVG01027991001 Vitis vinifera HOM05D006871 ORTHO05D008544 2.4e-44 182.6 151 59.6
Hma1.2p1_0491F.1_g164460 Hydrangea macrophylla HOM05D006871 ORTHO05D008544 4.1e-44 181.8 151 62.3
EL10Ac7g17459 Beta vulgaris HOM05D006871 ORTHO05D008544 6.9e-44 181.0 148 60.1
Nitab4.5_0002469g0070 Nicotiana tabacum HOM05D006871 ORTHO05D008544 9.1e-44 180.6 148 63.5
Nitab4.5_0011307g0010 Nicotiana tabacum HOM05D006871 ORTHO05D008544 2.0e-43 179.5 148 61.5
Migut.D00207 Erythranthe guttata HOM05D006871 ORTHO05D008544 4.5e-43 178.3 148 59.5
CANSAT25G1157 Cannabis sativa HOM05D006871 ORTHO05D008544 5.9e-43 177.9 149 60.4
CANSAT25G3267 Cannabis sativa HOM05D006871 ORTHO05D008544 5.9e-43 177.9 149 60.4
SalBow3G3208 Salvia bowleyana HOM05D006871 ORTHO05D008544 5.9e-43 177.9 154 57.8
Actinidia24342 Actinidia chinensis HOM05D006871 ORTHO05D008544 1.0e-42 177.2 151 59.6
AUR62033118 Chenopodium quinoa HOM05D006871 ORTHO05D008544 1.0e-42 177.2 148 59.5
Hund18131 Selenicereus undatus HOM05D006871 ORTHO05D008544 1.0e-42 177.2 183 50.3
MSTRG.18162 Avicennia marina HOM05D006871 ORTHO05D008544 1.3e-42 176.8 154 56.5
Eucgr.H01153 Eucalyptus grandis HOM05D006871 ORTHO05D008544 1.7e-42 176.4 154 59.7
ClCG09G005940 Citrullus lanatus HOM05D006871 ORTHO05D008544 2.2e-42 176.0 152 58.6
SGA_v2.0_scaffold1G00373 Striga asiatica HOM05D001198 ORTHO05D008544 2.2e-42 176.0 154 55.8
Lj2A1192T47 Lonicera japonica HOM05D006871 ORTHO05D008544 2.9e-42 175.6 148 62.2
TAR633G1007 Trochodendron aralioides HOM05D006871 ORTHO05D008544 3.8e-42 175.3 148 58.8
Prupe.8G259900 Prunus persica HOM05D006871 ORTHO05D008544 6.5e-42 174.5 147 60.5
Sed0022553 Sechium edule HOM05D006871 ORTHO05D008544 6.5e-42 174.5 152 59.9
MELO3C016009.2 Cucumis melo HOM05D006871 ORTHO05D008544 1.9e-41 172.9 152 57.9
PGSC0003DMG400011375 Solanum tuberosum HOM05D006871 ORTHO05D008544 1.9e-41 172.9 151 62.3
ECA236G5112 Erigeron canadensis HOM05D006871 ORTHO05D008544 2.5e-41 172.6 149 59.7
CsaV3_7G029180 Cucumis sativus L. HOM05D006871 ORTHO05D008544 4.2e-41 171.8 153 57.5
Lalb_Chr18g0047051 Lupinus albus HOM05D006871 ORTHO05D008544 4.2e-41 171.8 149 58.4
MD11G1313700 Malus domestica HOM05D006871 ORTHO05D008544 4.2e-41 171.8 149 57.7
Peaxi162Scf00001g00482 Petunia axillaris HOM05D006871 ORTHO05D008544 4.2e-41 171.8 149 59.1
RcHm_v2.0_Chr6g0293791 Rosa chinensis HOM05D006871 ORTHO05D008544 4.2e-41 171.8 149 59.1
Solyc09g075030.3 Solanum lycopersicum HOM05D006871 ORTHO05D008544 4.2e-41 171.8 152 61.2
Sopen09g029850 Solanum pennellii HOM05D006871 ORTHO05D008544 5.5e-41 171.4 152 61.8
Gorai.004G089300 Gossypium raimondii HOM05D006871 ORTHO05D008544 1.6e-40 169.9 185 51.4
Aqoxy5G00741 Aquilegia oxysepala HOM05D006871 ORTHO05D008544 3.6e-40 168.7 148 60.8
QL12p027406 Quercus lobata HOM05D006871 ORTHO05D008544 6.1e-40 167.9 144 61.8
Cc09_g05510 Coffea canephora HOM05D006871 ORTHO05D008544 1.4e-39 166.8 147 60.5
unitig_0.g659 Utricularia gibba HOM05D006871 ORTHO05D008544 3.9e-39 165.2 147 55.8
PSO210G5360 Papaver somniferum HOM05D006871 ORTHO05D008544 9.7e-38 160.6 145 57.2
PSO832G2873 Papaver somniferum HOM05D006871 ORTHO05D008544 9.7e-38 160.6 145 57.2
CiPaw.08G096300 Carya illinoinensis HOM05D006871 ORTHO05D008544 1.3e-37 160.2 149 55.7
CAN.G339.16 Capsicum annuum HOM05D006871 ORTHO05D008544 3.1e-36 155.6 142 60.6
arahy.Tifrunner.gnm1.ann1.KXN2DA Arachis hypogaea HOM05D006871 ORTHO05D008544 5.3e-36 154.8 154 55.2
arahy.Tifrunner.gnm1.ann1.K3SJ5I Arachis hypogaea HOM05D006871 ORTHO05D008544 7.0e-36 154.5 154 55.2
AUR62008650 Chenopodium quinoa HOM05D006871 ORTHO05D008544 7.7e-35 151.0 229 40.6
CDE05G0468 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 5.0e-34 148.3 143 52.4
ATR0796G034 Amborella trichopoda HOM05D006871 ORTHO05D008544 8.5e-34 147.5 146 53.4
FAN27G2794 Fragaria x ananassa HOM05D006871 ORTHO05D008544 1.5e-33 146.7 149 53.0
FvH4_2g25580 Fragaria vesca HOM05D006871 ORTHO05D008544 2.5e-33 146.0 149 53.0
FAN20G2591 Fragaria x ananassa HOM05D006871 ORTHO05D008544 5.5e-33 144.8 149 52.3
Os05g0367100 Oryza sativa ssp. japonica HOM05D006871 ORTHO05D008544 1.4e-31 140.2 141 53.2
HPP92_013720 Vanilla planifolia HOM05D006871 ORTHO05D008544 1.8e-31 139.8 144 49.3
Phvul.007G143800 Phaseolus vulgaris HOM05D006871 ORTHO05D008544 2.3e-31 139.4 151 51.7
VMungo0720G2524 Vigna mungo HOM05D006871 ORTHO05D008544 2.3e-31 139.4 154 51.9
Ca_10345_v3 Cicer arietinum L. HOM05D006871 ORTHO05D008544 6.7e-31 137.9 149 51.7
Lj1g0003126 Lotus japonicus HOM05D006871 ORTHO05D008544 6.7e-31 137.9 149 53.0
Glyma.02G155400 Glycine max HOM05D006871 ORTHO05D008544 2.6e-30 136.0 148 52.7
Glyma.10G018900 Glycine max HOM05D006871 ORTHO05D008544 3.3e-30 135.6 151 51.0
Nn3g21461 Nelumbo nucifera HOM05D006871 ORTHO05D008544 3.3e-30 135.6 113 61.9
Zm00001eb285510 Zea mays HOM05D006871 ORTHO05D008544 3.3e-30 135.6 137 54.0
Medtr1g088670 Medicago truncatula HOM05D006871 ORTHO05D008544 7.5e-30 134.4 154 51.9
FAN24G1547 Fragaria x ananassa HOM05D006871 ORTHO05D008544 1.1e-28 130.6 144 51.4
Psat6g165000 Pisum sativum HOM05D006871 ORTHO05D008544 2.7e-27 125.9 154 48.1
AagrBONN_evm.TU.Sc2ySwM_117.3922 Anthoceros agrestis HOM05D006871 ORTHO05D008544 4.7e-24 115.2 151 43.7
Pp3c25_320 Physcomitrium patens HOM05D006871 ORTHO05D008544 5.2e-23 111.7 148 42.6
Mapoly0043s0113 Marchantia polymorpha HOM05D006871 ORTHO05D008544 4.7e-16 88.6 135 36.3
DCAR_002824 Daucus carota HOM05D006871 ORTHO05D008544 1.5e-14 83.6 70 58.6
MBI19_g13201_MAGBIO Magnolia biondii HOM05D006871 ORTHO05D008544 2.6e-14 82.8 69 58.0
CDE11G0846 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 1.3e-10 70.5 69 53.6
CBR_g19096 Chara braunii HOM05D006871 ORTHO05D008544 1.7e-10 70.1 77 46.8
MD05G1198200 Malus domestica HOM05D006871 ORTHO05D008544 1.1e-09 67.4 57 52.6
Nitab4.5_0000119g0320 Nicotiana tabacum HOM05D006871 ORTHO05D008544 2.1e-08 63.2 46 65.2
MCO15G582 Micromonas commoda HOM05D006871 ORTHO05D008544 1.0e-07 60.8 160 31.2
RcHm_v2.0_Chr2g0134071 Rosa chinensis HOM05D006871 ORTHO05D008544 1.4e-07 60.5 64 53.1


User provided reference genes

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