Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 4.7e-175 617.8 331 100.0
C08p00760 Brassica napus HOM05D005116 ORTHO05D031782 1.3e-105 387.1 205 98.0
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 3.9e-105 385.6 229 93.4
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 7.9e-82 308.1 184 94.0
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 2.0e-48 197.2 369 43.6
BraA08t35622Z Brassica rapa HOM05D005116 ORTHO05D005937 7.5e-48 195.3 233 56.7
A08p37240 Brassica napus HOM05D005116 ORTHO05D005937 3.9e-44 183.0 234 55.6
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 3.2e-38 163.3 367 39.0
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 3.9e-36 156.4 357 38.7
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 2.1e-34 150.6 356 38.8
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 8.1e-34 148.7 350 38.0
BcaC02g09003 Brassica carinata HOM05D005905 ORTHO05D005996 6.4e-31 139.0 81 90.1
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 6.4e-31 139.0 336 39.0
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 7.3e-27 125.6 294 40.5
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 1.2e-24 118.2 307 39.4
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 1.2e-24 118.2 293 39.9
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 4.9e-23 112.8 390 33.3
C04p39600 Brassica napus HOM05D000848 ORTHO05D000007 6.4e-23 112.5 72 83.3
BolC4t25526H Brassica oleracea HOM05D000002 ORTHO05D001134 6.4e-23 112.5 72 83.3
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 2.4e-22 110.5 378 33.6
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 9.2e-22 108.6 289 39.8
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 2.5e-19 100.5 268 35.4
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 3.3e-19 100.1 268 35.4
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 4.3e-19 99.8 249 38.6
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 5.6e-19 99.4 225 43.6
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 3.1e-17 93.6 120 52.5
Thhalv10004341m.g Eutrema salsugineum HOM05D005905 ORTHO05D005996 8.9e-17 92.0 58 81.0
BcaNung03738 Brassica carinata HOM05D005905 ORTHO05D005996 1.2e-16 91.7 58 81.0
BcaNung03739 Brassica carinata HOM05D005905 ORTHO05D005996 1.2e-16 91.7 58 81.0
BcaNung03858 Brassica carinata HOM05D005905 ORTHO05D005996 1.2e-16 91.7 58 81.0
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 5.8e-16 89.4 189 42.9
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 9.9e-16 88.6 86 60.5
BcaNung03737 Brassica carinata HOM05D005905 ORTHO05D005996 1.7e-15 87.8 58 77.6
BolC7t44931H Brassica oleracea HOM05D005905 ORTHO05D005996 1.7e-15 87.8 58 77.6
C07p44070 Brassica napus HOM05D005905 ORTHO05D005996 8.4e-15 85.5 58 75.9
AT5G23520 Arabidopsis thaliana HOM05D005905 ORTHO05D005996 2.4e-14 84.0 58 75.9
A06p34480 Brassica napus HOM05D005905 ORTHO05D005996 4.2e-14 83.2 58 74.1
BraA06t26376Z Brassica rapa HOM05D005905 ORTHO05D005996 4.2e-14 83.2 58 74.1
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 9.3e-14 82.0 284 30.3
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 9.3e-14 82.0 255 33.7
AL6G34790 Arabidopsis lyrata HOM05D005905 ORTHO05D005996 6.0e-13 79.3 58 72.4
Carub.0006s2129 Capsella rubella HOM05D005905 ORTHO05D005996 1.7e-12 77.8 58 69.0
Sp2g23680 Schrenkiella parvula HOM05D005905 ORTHO05D005996 1.7e-12 77.8 58 72.4
CARHR190020 Cardamine hirsuta HOM05D005905 ORTHO05D005996 2.3e-12 77.4 68 63.2
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 1.1e-11 75.1 188 36.7
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 1.9e-11 74.3 191 33.0
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 1.3e-10 71.6 239 30.1
THA.LOC104800580 Tarenaya hassleriana HOM05D005905 ORTHO05D005996 2.8e-10 70.5 67 53.7
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 3.6e-10 70.1 325 28.6
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 4.8e-10 69.7 215 31.6
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 6.2e-10 69.3 312 28.5
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 6.2e-10 69.3 180 32.8
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 8.1e-10 68.9 325 28.6
Aa31LG11G2910 Aethionema arabicum HOM05D005905 ORTHO05D005996 1.1e-09 68.6 58 60.3
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.1e-09 68.6 190 34.7
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 1.4e-09 68.2 278 29.1
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 3.1e-09 67.0 172 34.9
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 3.1e-09 67.0 339 27.1
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 3.1e-09 67.0 175 34.3
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 3.1e-09 67.0 173 32.9
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 4.0e-09 66.6 296 27.7
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 4.0e-09 66.6 308 27.6
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 5.3e-09 66.2 295 28.8
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 6.9e-09 65.9 287 29.3
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 6.9e-09 65.9 324 27.2
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 6.9e-09 65.9 173 34.1
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 9.0e-09 65.5 321 27.7
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 1.2e-08 65.1 224 31.2
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 1.5e-08 64.7 318 27.7
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 2.0e-08 64.3 202 32.7
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 2.6e-08 63.9 60 61.7
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 2.6e-08 63.9 60 61.7
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 4.5e-08 63.2 165 32.7
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 5.8e-08 62.8 172 31.4
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 5.8e-08 62.8 293 27.0
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 5.8e-08 62.8 316 25.9
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 5.8e-08 62.8 174 32.2
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 7.6e-08 62.4 212 30.2
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 7.6e-08 62.4 178 31.5
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 9.9e-08 62.0 181 33.1
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 9.9e-08 62.0 181 33.1
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 1.3e-07 61.6 174 33.3
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 1.3e-07 61.6 174 33.3
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 1.3e-07 61.6 335 28.4
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 1.3e-07 61.6 212 32.5
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 1.3e-07 61.6 340 27.6
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 1.3e-07 61.6 329 26.4
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 1.7e-07 61.2 329 26.1
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 1.7e-07 61.2 193 30.6
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 2.2e-07 60.8 375 24.3
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 2.9e-07 60.5 255 28.6
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 3.8e-07 60.1 315 26.7
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 4.9e-07 59.7 179 31.8
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 4.9e-07 59.7 194 30.4
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 4.9e-07 59.7 171 33.3
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 1.1e-06 58.5 315 26.3
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.1e-06 58.5 295 29.2
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.4e-06 58.2 271 29.9
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 1.4e-06 58.2 256 28.1
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 1.9e-06 57.8 384 24.5
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 2.4e-06 57.4 66 53.0
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 3.2e-06 57.0 240 29.6
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 3.2e-06 57.0 240 29.6
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 3.2e-06 57.0 247 29.6
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 4.2e-06 56.6 215 30.2
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 5.4e-06 56.2 248 32.7
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 5.4e-06 56.2 321 25.2
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 9.3e-06 55.5 159 29.6


User provided reference genes

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