Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g36832 Brassica carinata HOM05D000454 ORTHO05D000591 1.4e-46 189.5 110 100.0
BcaC07g36835 Brassica carinata HOM05D000454 ORTHO05D000591 4.3e-40 167.9 102 97.1
BcaC07g36834 Brassica carinata HOM05D000454 ORTHO05D000591 2.7e-34 148.7 94 94.7
A08p36360 Brassica napus HOM05D000454 ORTHO05D000591 1.3e-33 146.4 94 92.6
BraA08t35540Z Brassica rapa HOM05D000454 ORTHO05D000591 6.6e-33 144.1 94 91.5
BcaB03g13454 Brassica carinata HOM05D000454 ORTHO05D000591 2.0e-29 132.5 95 89.5
BolC8t47000H Brassica oleracea HOM05D000454 ORTHO05D000591 5.8e-29 131.0 104 81.7
C08p02060 Brassica napus HOM05D000454 ORTHO05D000591 3.9e-25 118.2 74 100.0
AT1G05640 Arabidopsis thaliana HOM05D000454 ORTHO05D000591 6.4e-20 100.9 110 68.2
Carub.0001s0498 Capsella rubella HOM05D000454 ORTHO05D000591 1.7e-17 92.8 80 82.5
Aa31LG1G19000 Aethionema arabicum HOM05D000454 ORTHO05D000591 4.3e-16 88.2 97 67.0
AL1G15550 Arabidopsis lyrata HOM05D000037 ORTHO05D000591 4.0e-14 81.6 108 61.1
BraA04t17972Z Brassica rapa HOM05D000454 ORTHO05D000591 9.0e-14 80.5 97 53.6
A04p24510 Brassica napus HOM05D000454 ORTHO05D000591 1.2e-13 80.1 97 53.6
BcaC02g07965 Brassica carinata HOM05D000454 ORTHO05D000591 3.8e-12 75.1 98 52.0
C04p61390 Brassica napus HOM05D000454 ORTHO05D000591 3.8e-12 75.1 98 52.0
BolC4t27623H Brassica oleracea HOM05D000454 ORTHO05D000591 3.8e-12 75.1 98 52.0
BcaB01g04019 Brassica carinata HOM05D000454 ORTHO05D000591 8.4e-12 73.9 103 53.4
THA.LOC104800931 Tarenaya hassleriana HOM05D000454 ORTHO05D000591 1.1e-11 73.6 99 52.5
BcaB06g28568 Brassica carinata HOM05D000454 ORTHO05D000591 2.4e-11 72.4 100 49.0
Thhalv10016361m.g Eutrema salsugineum HOM05D000454 ORTHO05D000591 9.3e-11 70.5 47 78.7
Sp4g14120 Schrenkiella parvula HOM05D000454 ORTHO05D000591 1.6e-10 69.7 79 63.3
Aa31LG5G5200 Aethionema arabicum HOM05D000454 ORTHO05D000591 6.0e-10 67.8 123 39.8
BcaB02g10418 Brassica carinata HOM05D000454 ORTHO05D000591 7.8e-10 67.4 48 75.0
THA.LOC104826180 Tarenaya hassleriana HOM05D000454 ORTHO05D000591 1.0e-09 67.0 49 71.4
BolC3t18095H Brassica oleracea HOM05D000454 ORTHO05D016084 1.3e-09 66.6 75 57.3
BolC9t54091H Brassica oleracea HOM05D019570 ORTHO05D016084 1.3e-09 66.6 75 57.3
AL4G27080 Arabidopsis lyrata HOM05D000454 ORTHO05D000591 2.3e-09 65.9 47 74.5
A05p13730 Brassica napus HOM05D000454 ORTHO05D000591 3.0e-09 65.5 45 77.8
BraA05t20309Z Brassica rapa HOM05D000454 ORTHO05D000591 3.0e-09 65.5 45 77.8
Glyma.03G264500 Glycine max HOM05D000454 ORTHO05D000591 3.0e-09 65.5 87 60.9
Phvul.009G263200 Phaseolus vulgaris HOM05D000454 ORTHO05D000591 3.9e-09 65.1 87 59.8
Carub.0004s1312 Capsella rubella HOM05D000454 ORTHO05D000591 5.1e-09 64.7 47 74.5
Glyma.19G263700 Glycine max HOM05D000454 ORTHO05D000591 5.1e-09 64.7 85 61.2
Lj2g0000011 Lotus japonicus HOM05D000454 ORTHO05D000591 5.1e-09 64.7 71 66.2
BcaC02g11287 Brassica carinata HOM05D000454 ORTHO05D000591 8.7e-09 63.9 45 75.6
BcaC02g11289 Brassica carinata HOM05D000454 ORTHO05D000591 8.7e-09 63.9 45 75.6
Ca_09570_v3 Cicer arietinum L. HOM05D000454 ORTHO05D000591 1.1e-08 63.5 71 66.2
CARHR125510 Cardamine hirsuta HOM05D000454 ORTHO05D000591 1.5e-08 63.2 39 79.5
CiPaw.02G124400 Carya illinoinensis HOM05D000454 ORTHO05D000591 1.9e-08 62.8 44 65.9
TPR.G28869 Trifolium pratense HOM05D000454 ORTHO05D000591 1.9e-08 62.8 71 64.8
Psat3g000560 Pisum sativum HOM05D000454 ORTHO05D000591 2.5e-08 62.4 73 58.9
C04p17980 Brassica napus HOM05D000454 ORTHO05D000591 3.3e-08 62.0 97 45.4
BolC4t23344H Brassica oleracea HOM05D000454 ORTHO05D000591 3.3e-08 62.0 97 45.4
PGSC0003DMG400029269 Solanum tuberosum HOM05D000454 ORTHO05D000591 3.3e-08 62.0 79 67.1
AT2G31820 Arabidopsis thaliana HOM05D000454 ORTHO05D000591 7.3e-08 60.8 38 81.6
A03p60040 Brassica napus HOM05D019570 ORTHO05D016084 7.3e-08 60.8 45 75.6
Hund22582 Selenicereus undatus HOM05D000454 ORTHO05D000591 9.6e-08 60.5 107 36.4
Medtr7g117620 Medicago truncatula HOM05D000454 ORTHO05D000591 1.3e-07 60.1 62 74.2
Cpa.g.sc250.2 Carica papaya HOM05D000454 ORTHO05D000591 2.1e-07 59.3 39 74.4
ClCG09G014110 Citrullus lanatus HOM05D000454 ORTHO05D000591 2.1e-07 59.3 48 60.4
AUR62023723 Chenopodium quinoa HOM05D000454 ORTHO05D000591 2.8e-07 58.9 116 40.5
Duzib093G1282 Durio zibethinus HOM05D000454 ORTHO05D000591 2.8e-07 58.9 67 64.2
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 3.6e-07 58.5 92 55.4
Cfa008507 Carpinus fangiana HOM05D000454 ORTHO05D000591 3.6e-07 58.5 45 57.8
Eucgr.H00249 Eucalyptus grandis HOM05D000454 ORTHO05D000591 3.6e-07 58.5 107 39.3
Oeu064017.2 Olea europaea HOM05D000454 ORTHO05D000591 3.6e-07 58.5 93 59.1
AUR62002466 Chenopodium quinoa HOM05D000454 ORTHO05D000591 4.8e-07 58.2 121 43.0
Sopen12g032500 Solanum pennellii HOM05D000454 ORTHO05D000591 4.8e-07 58.2 79 65.8
C06p26750 Brassica napus HOM05D000454 ORTHO05D016084 6.2e-07 57.8 75 54.7
CAN.G607.3 Capsicum annuum HOM05D000454 ORTHO05D000591 6.2e-07 57.8 97 40.2
Haze_11144 Corylus avellana HOM05D000454 ORTHO05D000591 6.2e-07 57.8 45 57.8
Haze_11145 Corylus avellana HOM05D000454 ORTHO05D000591 6.2e-07 57.8 45 57.8
MD15G1143700 Malus domestica HOM05D000454 ORTHO05D000591 6.2e-07 57.8 47 57.4
Ah.13g073220 Amaranthus hybridus HOM05D000454 ORTHO05D000591 8.1e-07 57.4 85 56.5
Nitab4.5_0000013g0080 Nicotiana tabacum HOM05D000454 ORTHO05D000591 8.1e-07 57.4 83 43.4
Prupe.7G269500 Prunus persica HOM05D000454 ORTHO05D000591 8.1e-07 57.4 46 58.7
MD00G1087700 Malus domestica HOM05D000454 ORTHO05D000591 1.1e-06 57.0 47 57.4
Ciclev10019293m.g Citrus clementina HOM05D000454 ORTHO05D000591 1.4e-06 56.6 64 64.1
Dinv24757 Davidia involucrata HOM05D000454 ORTHO05D000591 1.4e-06 56.6 48 58.3
Migut.N03041 Erythranthe guttata HOM05D000454 ORTHO05D000591 1.4e-06 56.6 50 62.0
Peaxi162Scf01205g00028 Petunia axillaris HOM05D000454 ORTHO05D000591 1.4e-06 56.6 78 62.8
Potri.007G145200 Populus trichocarpa HOM05D000454 ORTHO05D000591 1.4e-06 56.6 68 36.8
MSTRG.22051 Avicennia marina HOM05D000454 ORTHO05D000591 1.8e-06 56.2 100 41.0
MSTRG.24555 Avicennia marina HOM05D000454 ORTHO05D000591 1.8e-06 56.2 74 66.2
CSS0003594 Camellia sinensis var. sinensis HOM05D000454 ORTHO05D000591 1.8e-06 56.2 51 58.8
CSS0010030 Camellia sinensis var. sinensis HOM05D000454 ORTHO05D000591 1.8e-06 56.2 51 58.8
Sc13g0007520 Simmondsia chinensis HOM05D000454 ORTHO05D000591 1.8e-06 56.2 121 33.9
Potri.017G006800 Populus trichocarpa HOM05D000454 ORTHO05D000591 2.4e-06 55.8 66 51.5
PGR142G2948 Punica granatum HOM05D000454 ORTHO05D000591 2.4e-06 55.8 43 60.5
Solyc08g014570.3 Solanum lycopersicum HOM05D000454 ORTHO05D000591 2.4e-06 55.8 92 41.3
MELO3C014383.2 Cucumis melo HOM05D000454 ORTHO05D000591 3.1e-06 55.5 48 58.3
CsaV3_6G037320 Cucumis sativus L. HOM05D000454 ORTHO05D000591 3.1e-06 55.5 48 58.3
Lj1g0010637 Lotus japonicus HOM05D000454 ORTHO05D000591 3.1e-06 55.5 45 60.0
Lalb_Chr18g0044981 Lupinus albus HOM05D000454 ORTHO05D000591 3.1e-06 55.5 47 57.4
Sabra07G0115700 Salix brachista HOM05D000454 ORTHO05D000591 3.1e-06 55.5 68 51.5
Sopen08g005560 Solanum pennellii HOM05D000454 ORTHO05D000591 3.1e-06 55.5 92 39.1
Nitab4.5_0000160g0090 Nicotiana tabacum HOM05D000454 ORTHO05D000591 4.0e-06 55.1 45 60.0
Sed0015432 Sechium edule HOM05D000454 ORTHO05D000591 4.0e-06 55.1 45 60.0
Thecc.05G002200 Theobroma cacao HOM05D000454 ORTHO05D000591 4.0e-06 55.1 40 65.0
CiPaw.01G201000 Carya illinoinensis HOM05D000454 ORTHO05D000591 5.3e-06 54.7 110 48.2
Nitab4.5_0007944g0010 Nicotiana tabacum HOM05D000454 ORTHO05D000591 5.3e-06 54.7 83 41.0
Gohir.A01G231400 Gossypium hirsutum HOM05D000454 ORTHO05D000591 6.9e-06 54.3 42 64.3
Gohir.D01G221500 Gossypium hirsutum HOM05D000454 ORTHO05D000591 6.9e-06 54.3 42 64.3
Gorai.002G268100 Gossypium raimondii HOM05D000454 ORTHO05D000591 6.9e-06 54.3 42 64.3
Sopen12g009270 Solanum pennellii HOM05D000454 ORTHO05D000591 6.9e-06 54.3 37 73.0
PGSC0003DMG400020397 Solanum tuberosum HOM05D000454 ORTHO05D000591 6.9e-06 54.3 37 73.0
Nitab4.5_0003520g0050 Nicotiana tabacum HOM05D000454 ORTHO05D000591 9.0e-06 53.9 45 57.8
Sabra17G0007800 Salix brachista HOM05D000454 ORTHO05D000591 9.0e-06 53.9 66 54.5
Solyc12g019060.2 Solanum lycopersicum HOM05D000454 ORTHO05D000591 9.0e-06 53.9 37 73.0
Solyc12g096670.2 Solanum lycopersicum HOM05D000454 ORTHO05D000591 9.0e-06 53.9 36 75.0


User provided reference genes

Program Settings