Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g36821 Brassica carinata HOM05D008213 ORTHO05D009787 1.9e-218 762.3 403 100.0
C08p02290 Brassica napus HOM05D008213 ORTHO05D009787 2.9e-195 685.3 405 91.6
BolC8t47021H Brassica oleracea HOM05D008213 ORTHO05D009787 4.6e-193 677.9 405 90.9
A08p36230 Brassica napus HOM05D008213 ORTHO05D009787 3.0e-184 648.7 408 88.0
BraA08t35527Z Brassica rapa HOM05D008213 ORTHO05D009787 7.4e-183 644.0 405 87.9
Sp1g04730 Schrenkiella parvula HOM05D008213 ORTHO05D009787 2.5e-138 496.1 469 64.4
AT1G05894 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 7.3e-138 494.6 468 65.6
CARHR005430 Cardamine hirsuta HOM05D008213 ORTHO05D009787 6.2e-137 491.5 450 66.0
AL1G15840 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 1.1e-136 490.7 470 65.1
Carub.0001s0526 Capsella rubella HOM05D008213 ORTHO05D009787 1.5e-135 486.9 466 63.7
Thhalv10009329m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 6.0e-132 474.9 477 63.3
Aa31LG1G8440 Aethionema arabicum HOM05D008213 ORTHO05D009787 2.5e-114 416.4 469 58.0
CARHR125120 Cardamine hirsuta HOM05D008213 ORTHO05D009787 1.8e-96 357.1 464 53.2
AT2G31480 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 6.9e-96 355.1 479 51.1
AL4G26740 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 2.2e-94 350.1 495 49.9
Carub.0004s1279 Capsella rubella HOM05D008213 ORTHO05D009787 2.2e-94 350.1 482 51.2
Thhalv10017539m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 6.5e-94 348.6 488 51.0
BraA04t17943Z Brassica rapa HOM05D008213 ORTHO05D009787 2.1e-92 343.6 493 50.9
A04p24240 Brassica napus HOM05D008213 ORTHO05D009787 3.0e-91 339.7 462 51.9
C04p60980 Brassica napus HOM05D008213 ORTHO05D009787 7.4e-90 335.1 499 49.1
Sp4g13940 Schrenkiella parvula HOM05D008213 ORTHO05D009787 9.7e-90 334.7 496 49.2
THA.LOC104826192 Tarenaya hassleriana HOM05D008213 ORTHO05D009787 2.2e-89 333.6 492 49.8
BcaB06g28538 Brassica carinata HOM05D008213 ORTHO05D009787 1.8e-88 330.5 440 51.6
BcaC02g11257 Brassica carinata HOM05D008213 ORTHO05D009787 2.8e-81 306.6 433 49.0
C04p18480 Brassica napus HOM05D008213 ORTHO05D009787 7.7e-79 298.5 423 49.2
BcaC02g07992 Brassica carinata HOM05D008213 ORTHO05D009787 2.9e-78 296.6 377 53.3
BolC4t23398H Brassica oleracea HOM05D008213 ORTHO05D009787 5.0e-78 295.8 424 48.6
BcaB02g10393 Brassica carinata HOM05D008213 ORTHO05D009787 4.2e-77 292.7 430 47.4
A05p14130 Brassica napus HOM05D008213 ORTHO05D009787 4.2e-77 292.7 427 48.7
BraA05t20342Z Brassica rapa HOM05D008213 ORTHO05D009787 8.8e-75 285.0 427 47.8
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 3.7e-73 279.6 453 45.9
BcaC02g11256 Brassica carinata HOM05D008213 ORTHO05D009787 5.9e-71 272.3 473 43.6
BcaB02g10392 Brassica carinata HOM05D008213 ORTHO05D009787 2.5e-69 266.9 465 42.8
Thecc.04G185000 Theobroma cacao HOM05D008213 ORTHO05D009787 8.3e-25 119.0 275 34.5
Dinv44200 Davidia involucrata HOM05D008213 ORTHO05D009787 4.3e-21 106.7 326 30.1
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 5.6e-21 106.3 379 27.7
Gohir.D02G016500 Gossypium hirsutum HOM05D008213 ORTHO05D009787 5.6e-21 106.3 385 27.8
Duzib151G0756 Durio zibethinus HOM05D008213 ORTHO05D009787 3.1e-19 100.5 241 33.6
TAR362G1061 Trochodendron aralioides HOM05D008213 ORTHO05D009787 3.1e-19 100.5 305 31.1
Ciclev10023340m.g Citrus clementina HOM05D008213 ORTHO05D009787 2.6e-18 97.4 313 32.6
Gorai.005G020000 Gossypium raimondii HOM05D008213 ORTHO05D009787 2.9e-17 94.0 221 30.3
Manes.11G119400 Manihot esculenta HOM05D008213 ORTHO05D009787 2.4e-16 90.9 224 33.5
PGR142G1601 Punica granatum HOM05D008213 ORTHO05D009787 4.1e-16 90.1 405 26.9
QL10p048331 Quercus lobata HOM05D008213 ORTHO05D009787 1.6e-15 88.2 349 27.8
Cpa.g.sc71.7 Carica papaya HOM05D008213 ORTHO05D009787 6.0e-15 86.3 370 27.6
Prupe.1G190600 Prunus persica HOM05D008213 ORTHO05D009787 2.3e-14 84.3 233 30.9
CiPaw.01G101800 Carya illinoinensis HOM05D008213 ORTHO05D009787 3.3e-13 80.5 404 25.5
Hma1.2p1_0754F.1_g213080 Hydrangea macrophylla HOM05D008213 ORTHO05D009787 3.3e-13 80.5 309 33.0
Potri.007G127200 Populus trichocarpa HOM05D008213 ORTHO05D009787 3.6e-12 77.0 456 24.8
COL.COLO4_24404 Corchorus olitorius HOM05D008213 ORTHO05D009787 1.4e-11 75.1 212 34.4
Sabra07G0103200 Salix brachista HOM05D008213 ORTHO05D009787 4.4e-10 70.1 328 28.4
RcHm_v2.0_Chr4g0407081 Rosa chinensis HOM05D008213 ORTHO05D009787 1.7e-09 68.2 425 23.8
GSVIVG01010744001 Vitis vinifera HOM05D008213 ORTHO05D009787 1.7e-09 68.2 279 30.1
DCAR_017617 Daucus carota HOM05D008213 ORTHO05D009787 9.2e-08 62.4 334 24.3
Atru.chr3.1539 Acer truncatum HOM05D008213 ORTHO05D009787 2.1e-07 61.2 98 40.8
CSS0004350 Camellia sinensis var. sinensis HOM05D008213 ORTHO05D009787 3.5e-07 60.5 353 26.9
MELO3C017723.2 Cucumis melo HOM05D008213 ORTHO05D009787 3.9e-06 57.0 222 25.7
Aqoxy5G00188 Aquilegia oxysepala HOM05D008213 ORTHO05D009787 5.1e-06 56.6 329 26.4
Glyma.12G053300 Glycine max HOM05D010840 ORTHO05D009787 5.1e-06 56.6 220 27.7


User provided reference genes

Program Settings