Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 2.6e-240 835.1 461 100.0
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 4.2e-238 827.8 463 99.4
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 8.1e-234 813.5 463 95.0
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 2.7e-229 798.5 464 94.0
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 2.2e-223 778.9 461 93.7
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 1.4e-222 776.2 462 90.3
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 2.0e-208 729.2 468 83.1
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 5.0e-207 724.5 461 82.4
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 1.4e-206 723.0 462 84.2
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 1.9e-206 722.6 457 81.4
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 2.8e-202 708.8 461 82.4
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 3.7e-202 708.4 461 81.1
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 1.5e-200 703.0 461 80.9
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 2.5e-198 695.7 465 79.8
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 4.2e-190 668.3 469 77.4
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 2.0e-184 649.4 473 71.7
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.5e-179 633.3 473 70.8
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 4.7e-173 611.7 478 68.8
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 4.5e-168 595.1 480 66.7
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 3.8e-167 592.0 483 67.5
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 2.3e-164 582.8 480 68.8
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 4.4e-155 552.0 466 67.2
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 1.2e-149 533.9 480 62.7
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 3.6e-149 532.3 485 59.0
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.8e-148 530.0 486 58.6
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 1.8e-148 530.0 486 58.6
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 5.2e-148 528.5 485 57.3
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 6.8e-148 528.1 494 57.9
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 2.9e-146 522.7 485 57.1
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 4.9e-146 521.9 485 58.1
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 7.8e-144 514.6 480 62.5
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 6.6e-143 511.5 486 56.6
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 1.8e-140 503.4 481 60.1
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 4.0e-140 502.3 485 55.3
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 6.4e-138 495.0 487 53.8
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 4.1e-137 492.3 487 56.3
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 4.1e-137 492.3 488 56.4
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 4.1e-137 492.3 491 53.8
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 9.2e-137 491.1 493 54.2
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 1.3e-135 487.3 488 57.8
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 3.9e-135 485.7 487 59.1
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 8.6e-135 484.6 495 54.1
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 1.1e-134 484.2 491 54.2
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 1.1e-134 484.2 459 56.0
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 1.1e-134 484.2 487 54.4
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.1e-134 484.2 485 56.7
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 3.3e-134 482.6 487 56.7
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 3.3e-134 482.6 486 53.9
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 3.6e-133 479.2 388 69.8
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 4.7e-133 478.8 490 55.1
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 8.1e-133 478.0 486 53.1
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.3e-132 476.5 493 54.2
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 3.1e-132 476.1 464 55.2
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.0e-131 473.4 490 55.1
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 3.4e-131 472.6 492 52.0
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 5.8e-131 471.9 498 53.8
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.4e-129 466.5 500 51.8
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 3.2e-129 466.1 500 53.0
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 9.2e-129 464.5 500 54.0
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 1.0e-127 461.1 454 58.1
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 1.5e-126 457.2 486 51.4
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.9e-126 456.8 489 52.8
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 3.3e-126 456.1 481 51.1
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 1.2e-125 454.1 495 53.1
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 2.1e-125 453.4 489 51.1
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 3.6e-125 452.6 475 53.7
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 3.6e-125 452.6 486 53.3
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 6.2e-125 451.8 448 56.0
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 8.1e-125 451.4 475 51.6
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 8.1e-125 451.4 471 52.4
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 1.4e-124 450.7 491 51.7
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 2.4e-124 449.9 500 50.6
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 3.1e-124 449.5 491 51.5
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 4.0e-124 449.1 489 52.4
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 4.0e-124 449.1 492 53.0
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 6.9e-124 448.4 473 54.1
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 2.6e-123 446.4 485 51.1
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.4e-123 445.7 454 53.1
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 1.3e-122 444.1 513 51.9
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 6.4e-122 441.8 520 49.0
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.2e-121 439.5 498 49.4
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 3.2e-121 439.5 488 52.7
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 4.2e-121 439.1 479 52.2
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.5e-120 436.0 489 52.1
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 6.0e-120 435.3 487 49.5
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 6.0e-120 435.3 487 51.5
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.0e-119 434.5 501 49.7
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.3e-119 434.1 489 48.7
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 3.0e-119 433.0 485 49.3
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 3.9e-119 432.6 501 49.7
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 3.9e-119 432.6 485 52.8
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 5.1e-119 432.2 443 54.6
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 8.7e-119 431.4 491 48.9
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 1.5e-118 430.6 488 52.9
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 1.6e-117 427.2 485 52.8
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 2.8e-117 426.4 437 54.0
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 6.2e-117 425.2 482 50.8
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 9.0e-116 421.4 496 51.6
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 2.0e-115 420.2 507 48.1
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 4.9e-114 415.6 492 51.8
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 1.4e-113 414.1 487 53.8
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 9.3e-113 411.4 490 50.8
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 1.6e-112 410.6 400 55.5
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 2.1e-112 410.2 492 50.4
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 2.1e-112 410.2 485 48.7
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 6.0e-112 408.7 497 46.9
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 3.9e-111 406.0 426 54.7
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 8.7e-111 404.8 437 51.3
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 1.9e-110 403.7 517 48.9
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 5.6e-110 402.1 453 52.5
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 5.6e-110 402.1 494 49.6
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 4.0e-108 396.0 581 42.2
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 4.0e-108 396.0 484 49.2
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 5.3e-108 395.6 468 50.2
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 2.0e-107 393.7 545 45.1
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 9.9e-107 391.3 443 50.3
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 4.2e-105 386.0 508 45.7
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 7.1e-105 385.2 493 49.7
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.3e-101 374.4 453 51.4
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 4.8e-101 372.5 384 51.0
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 9.0e-100 368.2 400 49.2
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 1.0e-98 364.8 464 49.4
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 1.7e-98 364.0 450 46.9
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.9e-97 360.5 537 42.5
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.5e-97 360.1 537 42.5
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 2.3e-95 353.6 480 42.9
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 3.9e-95 352.8 448 49.8
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 1.3e-93 347.8 487 44.8
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 2.4e-92 343.6 470 45.3
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 2.1e-88 330.5 490 42.9
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.1e-81 308.1 452 42.7
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 5.5e-81 305.8 396 48.5
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 2.7e-80 303.5 499 40.5
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 3.9e-79 299.7 451 39.7
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 5.7e-78 295.8 217 66.4
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 4.8e-77 292.7 424 41.7
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 1.5e-75 287.7 217 65.0
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 2.5e-73 280.4 292 49.7
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.8e-71 274.2 407 45.0
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.0e-71 273.5 482 39.8
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 8.8e-71 271.9 291 48.5
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 1.1e-70 271.6 341 48.4
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 3.7e-69 266.5 290 47.9
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 1.8e-68 264.2 223 56.1
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 4.1e-68 263.1 274 48.5
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 3.8e-66 256.5 482 36.7
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 1.2e-54 218.4 177 59.3
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 6.1e-40 169.5 352 33.2
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.0e-39 168.7 135 61.5
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 3.7e-37 160.2 315 43.5
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 6.4e-37 159.5 157 54.8
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 2.0e-35 154.5 208 46.2
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 3.5e-35 153.7 257 39.7
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 4.6e-35 153.3 234 34.6
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 8.9e-31 139.0 186 36.0
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 3.0e-26 124.0 94 59.6
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 8.1e-24 115.9 147 45.6
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 7.1e-20 102.8 84 57.1
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 2.1e-16 91.3 77 57.1
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 2.9e-13 80.9 122 41.0
BolC1t02302H Brassica oleracea HOM05D026626 ORTHO05D027483 1.4e-12 78.6 138 41.3
C01p23590 Brassica napus HOM05D026626 ORTHO05D027483 3.2e-12 77.4 138 40.6
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 6.0e-11 73.2 114 38.6
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 6.2e-08 63.2 50 58.0
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 2.4e-07 61.2 75 40.0
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 1.2e-06 58.9 54 50.0


User provided reference genes

Program Settings