Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36739 Brassica carinata HOM05D006747 ORTHO05D008384 2.5e-145 518.8 278 100.0
BolC7t40498H Brassica oleracea HOM05D006747 ORTHO05D008384 6.1e-144 514.2 279 99.6
C07p00520 Brassica napus HOM05D006747 ORTHO05D008384 1.0e-138 496.9 278 97.1
BraA07t27816Z Brassica rapa HOM05D006747 ORTHO05D008384 1.3e-133 479.9 277 93.9
BcaB03g16845 Brassica carinata HOM05D006747 ORTHO05D008384 5.2e-127 458.0 277 87.7
Sp3g33710 Schrenkiella parvula HOM05D006747 ORTHO05D008384 2.4e-124 449.1 286 86.7
Thhalv10002060m.g Eutrema salsugineum HOM05D006747 ORTHO05D008384 3.2e-124 448.7 286 82.2
AL3G53500 Arabidopsis lyrata HOM05D006747 ORTHO05D008384 1.6e-123 446.4 278 85.6
Carub.0003s3494 Capsella rubella HOM05D006747 ORTHO05D008384 7.8e-123 444.1 285 80.4
CARHR111050 Cardamine hirsuta HOM05D006747 ORTHO05D008384 2.1e-120 436.0 284 83.8
AT2G20495 Arabidopsis thaliana HOM05D006747 ORTHO05D008384 1.5e-118 429.9 284 82.4
A07p00240 Brassica napus HOM05D006747 ORTHO05D008384 4.3e-113 411.8 277 84.8
Aa31LG8G17440 Aethionema arabicum HOM05D006747 ORTHO05D008384 1.7e-109 399.8 259 79.9
THA.LOC104804045 Tarenaya hassleriana HOM05D006747 ORTHO05D008384 1.9e-105 386.3 257 76.3
Atru.chr5.1716 Acer truncatum HOM05D006747 ORTHO05D008384 1.7e-101 373.2 244 75.0
Cfa002442 Carpinus fangiana HOM05D006747 ORTHO05D008384 1.2e-99 367.1 243 72.4
Gorai.007G147500 Gossypium raimondii HOM05D006747 ORTHO05D008384 1.7e-98 363.2 249 73.1
Ciclev10021655m.g Citrus clementina HOM05D006747 ORTHO05D008384 6.6e-98 361.3 245 71.4
Gohir.D11G137550 Gossypium hirsutum HOM05D006747 ORTHO05D008384 6.6e-98 361.3 249 72.7
Dinv22393 Davidia involucrata HOM05D006747 ORTHO05D008384 8.7e-98 360.9 243 71.6
Lj5g0027576 Lotus japonicus HOM05D006747 ORTHO05D008384 1.5e-97 360.1 239 74.1
GSVIVG01028355001 Vitis vinifera HOM05D006747 ORTHO05D008384 1.9e-97 359.8 243 73.3
Gohir.A11G131500 Gossypium hirsutum HOM05D006747 ORTHO05D008384 4.3e-97 358.6 249 72.7
Thecc.01G256100 Theobroma cacao HOM05D006747 ORTHO05D008384 2.8e-96 355.9 249 69.9
Sabra05G0174300 Salix brachista HOM05D006747 ORTHO05D008384 6.2e-96 354.8 252 70.6
Haze_24648 Corylus avellana HOM05D006747 ORTHO05D008384 1.1e-95 354.0 274 65.3
Potri.005G225900 Populus trichocarpa HOM05D006747 ORTHO05D008384 1.4e-95 353.6 252 70.2
Duzib138G0743 Durio zibethinus HOM05D006747 ORTHO05D008384 1.8e-95 353.2 246 69.5
arahy.Tifrunner.gnm1.ann1.EQ4JVG Arachis hypogaea HOM05D006747 ORTHO05D008384 5.3e-95 351.7 247 70.0
Eucgr.B01566 Eucalyptus grandis HOM05D006747 ORTHO05D008384 6.9e-95 351.3 238 71.4
Glyma.06G315300 Glycine max HOM05D006747 ORTHO05D008384 9.0e-95 350.9 247 71.7
Phvul.007G192000 Phaseolus vulgaris HOM05D006747 ORTHO05D008384 1.2e-94 350.5 240 71.7
arahy.Tifrunner.gnm1.ann1.0525TE Arachis hypogaea HOM05D006747 ORTHO05D008384 1.5e-94 350.1 247 70.0
TPR.G35130 Trifolium pratense HOM05D006747 ORTHO05D008384 4.5e-94 348.6 247 69.2
Psat6g054040 Pisum sativum HOM05D006747 ORTHO05D008384 7.6e-94 347.8 239 70.3
VMungo0720G1324 Vigna mungo HOM05D006747 ORTHO05D008384 9.9e-94 347.4 239 70.3
COL.COLO4_04026 Corchorus olitorius HOM05D006747 ORTHO05D008384 3.8e-93 345.5 282 62.4
CSS0000886 Camellia sinensis var. sinensis HOM05D006747 ORTHO05D008384 4.9e-93 345.1 239 70.7
MD05G1195200 Malus domestica HOM05D006747 ORTHO05D008384 6.4e-93 344.7 243 68.3
RcHm_v2.0_Chr6g0287851 Rosa chinensis HOM05D006747 ORTHO05D008384 8.4e-93 344.4 254 68.9
FAN20G2892 Fragaria x ananassa HOM05D006747 ORTHO05D008384 1.1e-92 344.0 244 69.7
TAR362G0605 Trochodendron aralioides HOM05D006747 ORTHO05D008384 1.9e-92 343.2 243 70.0
Peaxi162Scf00987g00036 Petunia axillaris HOM05D006747 ORTHO05D008384 2.4e-92 342.8 244 68.0
FAN27G0389 Fragaria x ananassa HOM05D006747 ORTHO05D008384 3.2e-92 342.4 244 69.7
Lalb_Chr06g0170541 Lupinus albus HOM05D006747 ORTHO05D008384 5.4e-92 341.7 239 70.3
Solyc06g008350.3 Solanum lycopersicum HOM05D006747 ORTHO05D008384 7.1e-92 341.3 245 68.2
Sopen06g003200 Solanum pennellii HOM05D006747 ORTHO05D008384 7.1e-92 341.3 245 68.2
Medtr1g069790 Medicago truncatula HOM05D006747 ORTHO05D008384 1.2e-91 340.5 239 68.2
Rhsim13G0036000 Rhododendron simsii HOM05D006747 ORTHO05D008384 1.2e-91 340.5 237 71.7
PGSC0003DMG400025504 Solanum tuberosum HOM05D006747 ORTHO05D008384 1.2e-91 340.5 245 68.2
Lsat_1_v5_gn_5_182940 Lactuca sativa HOM05D006747 ORTHO05D008384 2.7e-91 339.3 243 67.9
Cc01_g18210 Coffea canephora HOM05D006747 ORTHO05D008384 3.5e-91 339.0 243 68.3
FAN15G1911 Fragaria x ananassa HOM05D006747 ORTHO05D008384 3.5e-91 339.0 244 68.9
PSO063G2179 Papaver somniferum HOM05D006747 ORTHO05D008384 1.0e-90 337.4 242 67.8
CiPaw.03G265900 Carya illinoinensis HOM05D006747 ORTHO05D008384 3.9e-90 335.5 257 65.0
CsaV3_7G027040 Cucumis sativus L. HOM05D006747 ORTHO05D008384 3.9e-90 335.5 240 68.3
HanXRQChr09g0254271 Helianthus annuus HOM05D006747 ORTHO05D008384 3.9e-90 335.5 243 70.4
Actinidia30159 Actinidia chinensis HOM05D006747 ORTHO05D008384 8.7e-90 334.3 249 65.5
Aqoxy2G03665 Aquilegia oxysepala HOM05D006747 ORTHO05D008384 1.5e-89 333.6 242 66.5
DCAR_012556 Daucus carota HOM05D006747 ORTHO05D008384 1.9e-89 333.2 239 68.6
EL10As5g23483 Beta vulgaris HOM05D006747 ORTHO05D008384 5.6e-89 331.6 244 66.4
CANSAT01G1212 Cannabis sativa HOM05D006747 ORTHO05D008384 5.6e-89 331.6 240 66.2
MELO3C012750.2 Cucumis melo HOM05D006747 ORTHO05D008384 1.6e-88 330.1 240 67.5
Migut.D00438 Erythranthe guttata HOM05D006747 ORTHO05D008384 3.7e-88 328.9 237 65.8
Manes.12G033600 Manihot esculenta HOM05D006747 ORTHO05D008384 1.1e-87 327.4 227 70.0
PGR031G3840 Punica granatum HOM05D006747 ORTHO05D008384 3.1e-87 325.9 222 70.7
SalBow4G0984 Salvia bowleyana HOM05D006747 ORTHO05D008384 3.1e-87 325.9 239 65.3
MSTRG.21486 Avicennia marina HOM05D006747 ORTHO05D008384 6.9e-87 324.7 252 65.5
vmacro02672 Vaccinium macrocarpon HOM05D006747 ORTHO05D008384 1.2e-86 323.9 292 59.2
ATR0736G001 Amborella trichopoda HOM05D006747 ORTHO05D008384 5.8e-86 321.6 248 63.3
AUR62011854 Chenopodium quinoa HOM05D006747 ORTHO05D008384 7.6e-86 321.2 227 67.8
Os07g0458800 Oryza sativa ssp. japonica HOM05D006747 ORTHO05D008384 1.3e-85 320.5 239 66.1
MBI07_g16913_MAGBIO Magnolia biondii HOM05D006747 ORTHO05D008384 2.2e-85 319.7 234 65.8
SGA_v2.0_scaffold138G35213 Striga asiatica HOM05D006747 ORTHO05D008384 2.9e-85 319.3 257 61.5
CDE06G1525 Ceratophyllum demersum HOM05D006747 ORTHO05D008384 1.9e-81 306.6 243 61.3
Prupe.8G221800 Prunus persica HOM05D006747 ORTHO05D008384 3.3e-81 305.8 250 63.2
unitig_8.g3882 Utricularia gibba HOM05D006747 ORTHO05D008384 1.3e-80 303.9 251 62.5
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 4.8e-80 302.0 213 69.0
Zm00001eb384950 Zea mays HOM05D006747 ORTHO05D008384 4.8e-80 302.0 241 61.4
Sc17g0000600 Simmondsia chinensis HOM05D006747 ORTHO05D008384 6.2e-80 301.6 210 68.6
AUR62024699 Chenopodium quinoa HOM05D006747 ORTHO05D008384 1.8e-79 300.1 211 66.8
FAN24G2059 Fragaria x ananassa HOM05D006747 ORTHO05D008384 5.8e-78 295.0 244 62.7
CAN.G941.16 Capsicum annuum HOM05D006747 ORTHO05D008384 2.5e-76 289.7 210 67.1
HPP92_014756 Vanilla planifolia HOM05D006747 ORTHO05D008384 2.7e-75 286.2 213 64.8
ECA248G1486 Erigeron canadensis HOM05D006747 ORTHO05D008384 2.5e-73 279.6 242 61.6
Nn1g02801 Nelumbo nucifera HOM05D006747 ORTHO05D008384 3.3e-73 279.3 249 59.0
Hma1.2p1_0273F.1_g109550 Hydrangea macrophylla HOM05D006747 ORTHO05D008384 1.3e-72 277.3 189 71.4
ClCG09G008030 Citrullus lanatus HOM05D006747 ORTHO05D008384 7.7e-70 268.1 416 40.6
PSO017G5775 Papaver somniferum HOM05D006747 ORTHO05D008384 1.1e-68 264.2 242 58.3
Pp3c11_10320 Physcomitrium patens HOM05D006747 ORTHO05D008384 5.5e-68 261.9 232 54.3
AagrBONN_evm.TU.Sc2ySwM_228.388 Anthoceros agrestis HOM05D006747 ORTHO05D008384 4.6e-67 258.8 233 55.4
Oeu035736.1 Olea europaea HOM05D006747 ORTHO05D008384 1.8e-63 246.9 175 65.1
Mapoly0024s0028 Marchantia polymorpha HOM05D006747 ORTHO05D008384 1.5e-62 243.8 232 53.9
Nitab4.5_0005593g0070 Nicotiana tabacum HOM05D006747 ORTHO05D008384 7.2e-60 235.0 211 57.3
HPP92_028089 Vanilla planifolia HOM05D006747 ORTHO05D008384 2.0e-57 226.9 170 62.4
Nitab4.5_0000326g0130 Nicotiana tabacum HOM05D006747 ORTHO05D008384 2.6e-57 226.5 245 51.8
QL09p039580 Quercus lobata HOM05D006747 ORTHO05D008384 4.1e-55 219.2 158 69.0
SMO115G0001 Selaginella moellendorffii HOM05D006747 ORTHO05D008384 1.2e-54 217.6 227 50.7
Sed0026822 Sechium edule HOM05D006747 ORTHO05D008384 5.0e-53 212.2 162 63.6
Ca_09674_v3 Cicer arietinum L. HOM05D006747 ORTHO05D008384 7.2e-44 181.8 135 65.2
FvH4_2g21270 Fragaria vesca HOM05D006747 ORTHO05D008384 1.2e-43 181.0 132 67.4
QL09p039572 Quercus lobata HOM05D006747 ORTHO05D008384 1.8e-31 140.6 90 73.3
SEGI_35883 Sequoiadendron giganteum HOM05D006747 ORTHO05D008384 2.6e-25 120.2 89 64.0
Hma1.2p1_0273F.1_g109560 Hydrangea macrophylla HOM05D006747 ORTHO05D008384 1.0e-21 108.2 73 69.9
SEGI_30594 Sequoiadendron giganteum HOM05D006747 ORTHO05D008384 1.1e-20 104.8 96 49.0
CAN.G507.4 Capsicum annuum HOM05D006747 ORTHO05D008384 1.0e-18 98.2 73 60.3
arahy.Tifrunner.gnm1.ann1.K1LLW7 Arachis hypogaea HOM05D006747 ORTHO05D008384 4.0e-18 96.3 57 80.7
MD10G1182200 Malus domestica HOM05D006747 ORTHO05D008384 8.3e-16 88.6 70 67.1
Cpa.g.sc165.14 Carica papaya HOM05D006747 ORTHO05D008384 1.2e-14 84.7 58 74.1
Actinidia34415 Actinidia chinensis HOM05D006747 ORTHO05D008384 4.3e-12 76.3 56 55.4
Actinidia34401 Actinidia chinensis HOM05D006747 ORTHO05D008384 3.6e-11 73.2 53 56.6
SEGI_37670 Sequoiadendron giganteum HOM05D006747 ORTHO05D008384 1.8e-10 70.9 52 59.6
Gohir.A07G213740 Gossypium hirsutum HOM05D006747 ORTHO05D008384 4.0e-10 69.7 153 32.0
Duzib133G0415 Durio zibethinus HOM05D006747 ORTHO05D008384 5.4e-07 59.3 49 61.2


User provided reference genes

Program Settings