Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 1.8e-229 798.9 404 100.0
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 2.0e-228 795.4 402 100.0
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 1.2e-225 786.2 402 98.8
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 2.7e-225 785.0 403 98.3
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 2.3e-224 781.9 402 98.0
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 8.7e-224 780.0 403 97.5
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 4.3e-223 777.7 404 97.0
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 4.3e-223 777.7 404 97.0
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 1.3e-222 776.2 403 97.0
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 6.2e-222 773.9 404 96.8
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 1.8e-221 772.3 403 96.8
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 6.9e-221 770.4 404 96.5
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 2.0e-220 768.8 400 96.5
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 7.6e-220 766.9 401 96.3
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 1.0e-219 766.5 401 96.5
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 4.2e-218 761.1 397 96.5
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 6.0e-217 757.3 401 94.5
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 1.0e-216 756.5 403 94.5
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 1.3e-216 756.1 403 95.5
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 8.7e-216 753.4 392 96.9
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 2.1e-214 748.8 401 93.5
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 4.8e-214 747.7 401 93.3
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 3.8e-211 738.0 401 92.0
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 3.9e-208 728.0 404 92.8
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 6.9e-205 717.2 401 89.5
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 4.5e-196 688.0 400 85.0
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 2.2e-195 685.6 401 83.5
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 1.8e-176 622.9 403 77.4
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 1.8e-176 622.9 396 78.0
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 2.3e-176 622.5 396 78.0
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 3.4e-175 618.6 403 76.2
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 4.4e-175 618.2 399 76.9
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 5.7e-175 617.8 402 76.4
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 5.7e-175 617.8 399 77.4
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 7.5e-175 617.5 399 76.7
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 7.5e-175 617.5 401 75.3
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 2.2e-174 615.9 400 76.8
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 2.8e-174 615.5 402 75.9
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 1.8e-173 612.8 402 75.9
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 1.8e-173 612.8 399 75.9
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.4e-173 612.5 402 75.4
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 3.1e-173 612.1 401 74.6
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 9.1e-173 610.5 407 75.2
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 9.1e-173 610.5 401 74.1
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 1.2e-172 610.1 399 75.9
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 1.2e-172 610.1 401 74.6
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 1.2e-172 610.1 401 74.8
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 1.6e-172 609.8 399 74.2
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 1.6e-172 609.8 399 76.4
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 2.0e-172 609.4 399 73.4
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 2.0e-172 609.4 401 74.8
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 2.0e-172 609.4 401 74.6
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 2.7e-172 609.0 401 74.3
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 3.5e-172 608.6 399 73.4
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 7.7e-172 607.4 401 74.3
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 7.7e-172 607.4 401 76.8
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 1.0e-171 607.1 400 73.2
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 1.0e-171 607.1 401 74.3
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 1.3e-171 606.7 433 70.7
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 1.7e-171 606.3 397 76.1
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 3.8e-171 605.1 401 74.1
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 3.8e-171 605.1 401 74.1
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 3.8e-171 605.1 401 74.6
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 5.0e-171 604.7 401 75.8
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 8.6e-171 604.0 396 76.3
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 1.5e-170 603.2 402 74.6
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 1.9e-170 602.8 399 73.9
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 4.2e-170 601.7 402 75.6
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 7.2e-170 600.9 399 73.7
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 1.6e-169 599.7 396 75.0
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 2.1e-169 599.4 412 72.8
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 2.1e-169 599.4 407 74.7
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 3.6e-169 598.6 396 76.0
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 3.6e-169 598.6 402 72.9
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 3.6e-169 598.6 425 72.0
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 4.7e-169 598.2 401 75.3
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 6.1e-169 597.8 399 74.4
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 3.0e-168 595.5 401 72.8
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 3.0e-168 595.5 401 72.8
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 4.0e-168 595.1 399 73.2
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 6.8e-168 594.3 396 75.3
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 8.8e-168 594.0 397 74.8
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 1.2e-167 593.6 402 72.4
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 1.5e-167 593.2 399 72.2
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 2.0e-167 592.8 419 69.7
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 3.4e-167 592.0 406 74.1
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 3.4e-167 592.0 395 73.7
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 3.4e-167 592.0 361 79.2
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 4.4e-167 591.7 401 74.8
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 5.7e-167 591.3 401 73.1
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 6.3e-166 587.8 400 72.5
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 8.3e-166 587.4 360 80.6
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 1.4e-165 586.6 402 72.9
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 4.1e-165 585.1 406 72.2
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 7.0e-165 584.3 402 72.6
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 7.0e-165 584.3 396 73.5
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 2.0e-164 582.8 390 74.9
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 2.7e-164 582.4 397 72.0
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 1.5e-162 576.6 400 72.2
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 1.5e-162 576.6 403 71.2
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 8.0e-161 570.9 404 70.3
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 8.0e-161 570.9 400 71.0
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 1.4e-160 570.1 385 73.8
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 5.2e-160 568.2 395 73.2
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 4.9e-158 561.6 501 60.7
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 8.3e-158 560.8 445 65.2
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 1.0e-155 553.9 445 64.7
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 1.5e-154 550.1 418 67.0
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 2.8e-153 545.8 455 65.3
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 9.8e-151 537.3 397 65.7
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 2.4e-149 532.7 554 54.2
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 1.5e-146 523.5 355 74.9
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 2.0e-143 513.1 309 79.6
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 2.6e-135 486.1 329 75.7
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 2.4e-133 479.6 318 76.7
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 2.5e-130 469.5 304 76.3
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 1.8e-128 463.4 290 75.5
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 1.1e-117 427.6 354 60.2
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 1.5e-114 417.2 351 58.1
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 1.5e-114 417.2 345 65.5
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 4.8e-113 412.1 360 55.3
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 4.5e-111 405.6 264 76.5
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 8.7e-107 391.3 339 54.9
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 3.8e-94 349.4 357 48.7
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 5.3e-88 328.9 242 73.1
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 4.4e-82 309.3 222 69.8
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 2.4e-80 303.5 284 50.7
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 4.4e-74 282.7 387 41.1
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 1.7e-70 270.8 343 42.0
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 1.9e-61 240.7 376 39.4
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 2.6e-58 230.3 239 54.0
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 2.7e-55 220.3 205 61.0
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 2.7e-55 220.3 171 68.4
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 4.5e-55 219.5 273 49.1
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 1.9e-45 187.6 99 90.9
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 9.8e-34 148.7 80 87.5
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 1.3e-33 148.3 82 86.6
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 2.0e-26 124.4 130 55.4
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 4.9e-25 119.8 80 67.5
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 4.3e-21 106.7 64 84.4
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 2.4e-19 100.9 61 75.4
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 4.4e-18 96.7 105 45.7
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 3.4e-10 70.5 64 57.8
AagrBONN_evm.TU.Sc2ySwM_369.460 Anthoceros agrestis HOM05D006883 ORTHO05D008624 4.2e-08 63.5 269 24.9
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 1.6e-07 61.6 82 42.7
Nitab4.5_0002986g0100 Nicotiana tabacum HOM05D006883 ORTHO05D008624 2.7e-07 60.8 277 25.3
Sc25g0004770 Simmondsia chinensis HOM05D006883 ORTHO05D008624 2.7e-07 60.8 270 23.3
CARHR194360 Cardamine hirsuta HOM05D006883 ORTHO05D008624 3.5e-07 60.5 298 23.8
C09p57810 Brassica napus HOM05D006883 ORTHO05D008624 7.8e-07 59.3 272 25.7
BcaB08g36654 Brassica carinata HOM05D006883 ORTHO05D008624 1.0e-06 58.9 301 26.2
Nitab4.5_0000829g0010 Nicotiana tabacum HOM05D006883 ORTHO05D008624 1.0e-06 58.9 273 24.9
A10p20920 Brassica napus HOM05D006883 ORTHO05D008624 1.3e-06 58.5 279 25.1
Ca_00572_v3 Cicer arietinum L. HOM05D006883 ORTHO05D008624 1.3e-06 58.5 280 25.0
AUR62041032 Chenopodium quinoa HOM05D006883 ORTHO05D008624 1.7e-06 58.2 276 23.2
Cc03_g02320 Coffea canephora HOM05D006883 ORTHO05D008624 1.7e-06 58.2 279 22.9
Mapoly0040s0084 Marchantia polymorpha HOM05D005785 ORTHO05D007017 1.7e-06 58.2 167 28.1
Phvul.006G161600 Phaseolus vulgaris HOM05D006883 ORTHO05D008624 1.7e-06 58.2 274 23.4
Carub.0006s1695 Capsella rubella HOM05D006883 ORTHO05D008624 2.3e-06 57.8 326 23.0
LjContig00389g0025618 Lotus japonicus HOM05D006883 ORTHO05D008624 2.3e-06 57.8 274 23.7
RcHm_v2.0_Chr4g0421151 Rosa chinensis HOM05D006883 ORTHO05D008624 2.3e-06 57.8 279 22.9
arahy.Tifrunner.gnm1.ann1.WI0ZBZ Arachis hypogaea HOM05D006883 ORTHO05D008624 3.0e-06 57.4 273 24.2
BraA10t44156Z Brassica rapa HOM05D006883 ORTHO05D008624 3.0e-06 57.4 300 26.3
Lalb_Chr15g0087031 Lupinus albus HOM05D006883 ORTHO05D008624 3.0e-06 57.4 274 25.5
Actinidia23426 Actinidia chinensis HOM05D006883 ORTHO05D008624 3.9e-06 57.0 271 23.2
BcaC04g18657 Brassica carinata HOM05D006883 ORTHO05D008624 3.9e-06 57.0 272 25.0
BolC9t58650H Brassica oleracea HOM05D006883 ORTHO05D008624 3.9e-06 57.0 272 25.0
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 3.9e-06 57.0 42 71.4
AL6G29930 Arabidopsis lyrata HOM05D006883 ORTHO05D008624 5.1e-06 56.6 318 23.3
arahy.Tifrunner.gnm1.ann1.GN2N7N Arachis hypogaea HOM05D006883 ORTHO05D008624 5.1e-06 56.6 273 24.2
Thhalv10013668m.g Eutrema salsugineum HOM05D006883 ORTHO05D008624 5.1e-06 56.6 332 24.4
Thecc.04G278100 Theobroma cacao HOM05D006883 ORTHO05D008624 5.1e-06 56.6 276 22.8
SEGI_20295 Sequoiadendron giganteum HOM05D006883 ORTHO05D008624 6.6e-06 56.2 265 25.7
Mapoly0058s0049 Marchantia polymorpha HOM05D006883 ORTHO05D008624 8.7e-06 55.8 299 23.1
Sp6g25680 Schrenkiella parvula HOM05D006883 ORTHO05D008624 8.7e-06 55.8 336 23.2


User provided reference genes

Program Settings