Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36704 Brassica carinata HOM05D009461 ORTHO05D002252 3.8e-41 171.0 83 100.0
C07p00920 Brassica napus HOM05D009461 ORTHO05D002252 3.8e-41 171.0 83 100.0
BolC7t40528H Brassica oleracea HOM05D009461 ORTHO05D002252 3.8e-41 171.0 83 100.0
A07p00480 Brassica napus HOM05D009461 ORTHO05D002252 4.2e-40 167.5 83 97.6
BraA07t27839Z Brassica rapa HOM05D009461 ORTHO05D002252 4.2e-40 167.5 83 97.6
BcaC05g27512 Brassica carinata HOM05D009461 ORTHO05D002252 3.3e-37 157.9 83 94.0
C05p34820 Brassica napus HOM05D009461 ORTHO05D002252 3.3e-37 157.9 83 94.0
Thhalv10011902m.g Eutrema salsugineum HOM05D009461 ORTHO05D002252 7.4e-37 156.8 83 90.4
C05p34800 Brassica napus HOM05D009461 ORTHO05D002252 9.7e-37 156.4 83 92.8
BcaB07g33682 Brassica carinata HOM05D009461 ORTHO05D002252 2.8e-36 154.8 83 89.2
BolC6t35534H Brassica oleracea HOM05D009461 ORTHO05D002252 3.1e-35 151.4 83 89.2
Sp1g36190 Schrenkiella parvula HOM05D009461 ORTHO05D002252 3.1e-35 151.4 83 89.2
A06p03910 Brassica napus HOM05D009461 ORTHO05D002252 4.1e-35 151.0 83 89.2
BraA06t23599Z Brassica rapa HOM05D009461 ORTHO05D002252 4.1e-35 151.0 83 89.2
BcaC08g43126 Brassica carinata HOM05D009461 ORTHO05D002252 1.5e-34 149.1 83 88.0
C06p04010 Brassica napus HOM05D009461 ORTHO05D002252 1.5e-34 149.1 83 88.0
AL1G56180 Arabidopsis lyrata HOM05D009461 ORTHO05D002252 4.5e-34 147.5 81 85.2
CARHR039300 Cardamine hirsuta HOM05D009461 ORTHO05D002252 4.5e-34 147.5 79 86.1
AL1G56260 Arabidopsis lyrata HOM05D009461 ORTHO05D002252 1.0e-33 146.4 81 85.2
BcaB04g17352 Brassica carinata HOM05D009461 ORTHO05D002252 2.2e-33 145.2 83 85.5
AT1G49310 Arabidopsis thaliana HOM05D009461 ORTHO05D002252 2.5e-32 141.7 81 80.2
Carub.0001s3848 Capsella rubella HOM05D009461 ORTHO05D002252 2.5e-32 141.7 82 81.7
A08p04090 Brassica napus HOM05D009461 ORTHO05D002252 1.6e-31 139.0 83 81.9
BraA08t32434Z Brassica rapa HOM05D009461 ORTHO05D002252 1.6e-31 139.0 83 81.9
C08p04280 Brassica napus HOM05D009461 ORTHO05D002252 6.1e-31 137.1 83 80.7
BolC8t47231H Brassica oleracea HOM05D009461 ORTHO05D002252 6.1e-31 137.1 83 80.7
BcaC07g37067 Brassica carinata HOM05D009461 ORTHO05D002252 1.0e-30 136.3 83 80.7
Carub.0001s3849 Capsella rubella HOM05D009461 ORTHO05D002252 3.3e-29 131.3 84 73.8
Aa31LG10G4650 Aethionema arabicum HOM05D009461 ORTHO05D002252 9.7e-21 103.2 58 79.3
THA.LOC104821866 Tarenaya hassleriana HOM05D009461 ORTHO05D002252 3.8e-17 91.3 78 57.7
Sabra04G0101600 Salix brachista HOM05D007227 ORTHO05D002252 1.2e-10 69.7 78 52.6
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 7.7e-10 67.0 76 46.1
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 6.5e-09 63.9 80 43.8
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 1.1e-08 63.2 74 45.9
Potri.004G153200 Populus trichocarpa HOM05D007227 ORTHO05D002252 1.1e-08 63.2 78 48.7
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 1.5e-08 62.8 67 44.8
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 1.5e-08 62.8 72 45.8
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 1.9e-08 62.4 80 45.0
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 2.5e-08 62.0 87 41.4
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 3.2e-08 61.6 71 43.7
Potri.009G114400 Populus trichocarpa HOM05D007227 ORTHO05D002252 3.2e-08 61.6 72 47.2
arahy.Tifrunner.gnm1.ann1.9WD8WJ Arachis hypogaea HOM05D007227 ORTHO05D002252 7.2e-08 60.5 78 43.6
arahy.Tifrunner.gnm1.ann1.BHH580 Arachis hypogaea HOM05D007227 ORTHO05D002252 7.2e-08 60.5 77 41.6
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 7.2e-08 60.5 72 38.9
LjContig00272g0019714 Lotus japonicus HOM05D007227 ORTHO05D002252 7.2e-08 60.5 76 43.4
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 7.2e-08 60.5 74 43.2
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 7.2e-08 60.5 69 46.4
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 7.2e-08 60.5 75 46.7
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 9.4e-08 60.1 85 40.0
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 9.4e-08 60.1 71 42.3
Gohir.A01G178500 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.2e-07 59.7 71 42.3
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.2e-07 59.7 84 40.5
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 1.6e-07 59.3 70 42.9
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 2.1e-07 58.9 76 42.1
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 2.1e-07 58.9 76 40.8
ECA236G1258 Erigeron canadensis HOM05D007227 ORTHO05D002252 2.1e-07 58.9 79 39.2
HanXRQChr04g0127891 Helianthus annuus HOM05D007227 ORTHO05D002252 2.1e-07 58.9 71 40.8
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 2.1e-07 58.9 71 43.7
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 3.6e-07 58.2 74 40.5
Sed0019925 Sechium edule HOM05D007227 ORTHO05D002252 3.6e-07 58.2 76 43.4
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 4.7e-07 57.8 72 47.2
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 4.7e-07 57.8 81 42.0
Hund00277 Selenicereus undatus HOM05D013587 ORTHO05D002252 4.7e-07 57.8 74 41.9
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 6.1e-07 57.4 84 39.3
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 8.0e-07 57.0 72 37.5
CsaV3_2G014630 Cucumis sativus L. HOM05D007227 ORTHO05D002252 1.0e-06 56.6 83 39.8
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 1.0e-06 56.6 79 41.8
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 1.0e-06 56.6 66 42.4
Hund00283 Selenicereus undatus HOM05D013587 ORTHO05D002252 1.0e-06 56.6 75 44.0
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 1.4e-06 56.2 74 40.5
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 1.8e-06 55.8 73 37.0
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 1.8e-06 55.8 78 42.3
Manes.17G100100 Manihot esculenta HOM05D007227 ORTHO05D002252 1.8e-06 55.8 75 37.3
Psat2g007200 Pisum sativum HOM05D007227 ORTHO05D002252 1.8e-06 55.8 72 38.9
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 1.8e-06 55.8 86 36.0
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 2.3e-06 55.5 81 37.0
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 2.3e-06 55.5 75 44.0
Duzib132G0468 Durio zibethinus HOM05D007227 ORTHO05D002252 3.0e-06 55.1 74 41.9
Phvul.009G024600 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 3.0e-06 55.1 70 44.3
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 3.0e-06 55.1 73 37.0
EL10Ac9g21739 Beta vulgaris HOM05D007227 ORTHO05D002252 4.0e-06 54.7 77 39.0
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 4.0e-06 54.7 66 39.4
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 5.2e-06 54.3 90 35.6
Peaxi162Scf00016g00938 Petunia axillaris HOM05D007227 ORTHO05D002252 5.2e-06 54.3 75 37.3
Sopen01g051670 Solanum pennellii HOM05D007227 ORTHO05D002252 5.2e-06 54.3 78 38.5
AUR62016714 Chenopodium quinoa HOM05D013587 ORTHO05D002252 6.8e-06 53.9 80 33.8
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 6.8e-06 53.9 69 39.1
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 6.8e-06 53.9 80 36.2
PGR042G2841 Punica granatum HOM05D007227 ORTHO05D002252 8.8e-06 53.5 73 39.7
Hund00291 Selenicereus undatus HOM05D013587 ORTHO05D002252 8.8e-06 53.5 70 41.4


User provided reference genes

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