Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36697 Brassica carinata HOM05D006061 ORTHO05D007450 0.0e+00 1207.2 604 100.0
BolC7t40535H Brassica oleracea HOM05D006061 ORTHO05D007450 0.0e+00 1207.2 604 100.0
C07p00980 Brassica napus HOM05D006061 ORTHO05D007450 0.0e+00 1202.2 604 99.7
A07p00530 Brassica napus HOM05D006061 ORTHO05D007450 0.0e+00 1156.7 606 95.9
BraA07t27847Z Brassica rapa HOM05D006061 ORTHO05D007450 0.0e+00 1150.2 607 95.7
BcaB03g16813 Brassica carinata HOM05D006061 ORTHO05D007450 0.0e+00 1089.7 605 91.1
Thhalv10001935m.g Eutrema salsugineum HOM05D006061 ORTHO05D007450 1.0e-297 1026.2 605 86.0
AL3G47870 Arabidopsis lyrata HOM05D006061 ORTHO05D007450 3.8e-292 1007.7 604 82.9
AT2G20210 Arabidopsis thaliana HOM05D006061 ORTHO05D007450 2.0e-288 995.3 606 82.3
Aa31LG8G17130 Aethionema arabicum HOM05D006061 ORTHO05D007450 6.8e-257 890.6 599 74.1
Sp3g33450 Schrenkiella parvula HOM05D006061 ORTHO05D007450 3.7e-234 815.1 478 86.8
THA.LOC104814544 Tarenaya hassleriana HOM05D006061 ORTHO05D007450 1.2e-232 810.1 605 67.3
Carub.0003s3454 Capsella rubella HOM05D006061 ORTHO05D007450 1.1e-217 760.4 478 80.8
Thecc.01G244800 Theobroma cacao HOM05D006061 ORTHO05D007450 5.4e-177 625.2 604 55.1
Duzib138G1183 Durio zibethinus HOM05D006061 ORTHO05D007450 4.5e-176 622.1 604 55.0
Atru.chr5.1926 Acer truncatum HOM05D006061 ORTHO05D007450 7.7e-176 621.3 612 55.1
Potri.014G194800 Populus trichocarpa HOM05D006061 ORTHO05D007450 2.8e-170 602.8 614 52.9
Gorai.007G151600 Gossypium raimondii HOM05D006061 ORTHO05D007450 5.4e-169 598.6 604 53.5
Gohir.A11G135100 Gossypium hirsutum HOM05D006061 ORTHO05D007450 1.2e-168 597.4 607 53.2
Prupe.8G209500 Prunus persica HOM05D006061 ORTHO05D007450 1.6e-168 597.0 605 52.9
Cfa002517 Carpinus fangiana HOM05D006061 ORTHO05D007450 2.1e-165 586.6 607 54.0
Gohir.D11G141300 Gossypium hirsutum HOM05D006061 ORTHO05D007450 3.6e-165 585.9 607 53.0
Eucgr.H00824 Eucalyptus grandis HOM05D006061 ORTHO05D007450 4.7e-165 585.5 607 51.4
TAR365G1230 Trochodendron aralioides HOM05D006061 ORTHO05D007450 1.2e-163 580.9 624 50.3
MD10G1171000 Malus domestica HOM05D006061 ORTHO05D007450 1.1e-161 574.3 605 51.4
Actinidia30104 Actinidia chinensis HOM05D006061 ORTHO05D007450 1.4e-161 573.9 617 50.4
Ciclev10019392m.g Citrus clementina HOM05D006061 ORTHO05D007450 9.5e-158 561.2 607 51.9
ClCG09G009420 Citrullus lanatus HOM05D006061 ORTHO05D007450 7.5e-155 551.6 606 50.8
Sabra14G0142900 Salix brachista HOM05D006061 ORTHO05D007450 1.7e-154 550.4 582 52.6
TWI59G0704 Tripterygium wilfordii HOM05D006061 ORTHO05D007450 2.2e-154 550.1 607 50.4
Lj1g0026990 Lotus japonicus HOM05D006061 ORTHO05D007450 7.0e-153 545.0 614 49.8
RcHm_v2.0_Chr6g0285561 Rosa chinensis HOM05D006061 ORTHO05D007450 1.0e-151 541.2 608 50.5
CsaV3_7G025440 Cucumis sativus L. HOM05D006061 ORTHO05D007450 1.7e-151 540.4 606 50.2
Ca_08767_v3 Cicer arietinum L. HOM05D006061 ORTHO05D007450 8.6e-151 538.1 609 49.4
Glyma.19G171100 Glycine max HOM05D006061 ORTHO05D007450 2.1e-149 533.5 612 49.8
TPR.G7560 Trifolium pratense HOM05D006061 ORTHO05D007450 2.8e-149 533.1 617 49.6
COL.COLO4_08163 Corchorus olitorius HOM05D006061 ORTHO05D007450 6.2e-149 531.9 653 47.5
Phvul.001G168300 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 8.9e-148 528.1 608 50.2
Sc05g0002480 Simmondsia chinensis HOM05D006061 ORTHO05D007450 2.0e-147 526.9 624 47.9
PGR083G1193 Punica granatum HOM05D006061 ORTHO05D007450 5.8e-147 525.4 605 49.6
CiPaw.04G108700 Carya illinoinensis HOM05D006061 ORTHO05D007450 4.9e-146 522.3 523 54.5
Glyma.03G169900 Glycine max HOM05D006061 ORTHO05D007450 1.9e-145 520.4 613 49.4
AUR62008856 Chenopodium quinoa HOM05D006061 ORTHO05D007450 6.0e-144 515.4 620 46.6
Psat3g050240 Pisum sativum HOM05D006061 ORTHO05D007450 4.3e-142 509.2 612 47.7
Nn1g03086 Nelumbo nucifera HOM05D006061 ORTHO05D007450 5.6e-142 508.8 622 46.8
EL10Ac7g17761 Beta vulgaris HOM05D006061 ORTHO05D007450 7.3e-142 508.4 636 45.4
GSVIVG01028489001 Vitis vinifera HOM05D006061 ORTHO05D007450 1.6e-141 507.3 568 48.4
PGSC0003DMG401020085 Solanum tuberosum HOM05D006061 ORTHO05D007450 2.8e-141 506.5 625 47.2
arahy.Tifrunner.gnm1.ann1.J8EIPB Arachis hypogaea HOM05D006061 ORTHO05D007450 4.7e-141 505.8 612 48.5
arahy.Tifrunner.gnm1.ann1.4WTK5H Arachis hypogaea HOM05D006061 ORTHO05D007450 1.8e-140 503.8 612 48.2
SGA_v2.0_scaffold3G01591 Striga asiatica HOM05D006061 ORTHO05D007450 3.1e-140 503.1 632 46.4
Migut.N02246 Erythranthe guttata HOM05D006061 ORTHO05D007450 1.5e-139 500.7 619 46.2
Solyc06g083640.4 Solanum lycopersicum HOM05D006061 ORTHO05D007450 2.6e-139 500.0 623 46.7
FvH4_2g19870 Fragaria vesca HOM05D006061 ORTHO05D007450 3.4e-139 499.6 612 47.1
CANSAT01G1389 Cannabis sativa HOM05D006061 ORTHO05D007450 4.4e-139 499.2 610 47.5
Haze_24749 Corylus avellana HOM05D006061 ORTHO05D007450 5.8e-139 498.8 685 46.0
Sopen06g035030 Solanum pennellii HOM05D006061 ORTHO05D007450 9.9e-139 498.0 623 46.7
MSTRG.12506 Avicennia marina HOM05D006061 ORTHO05D007450 3.2e-137 493.0 619 45.7
Hund05498 Selenicereus undatus HOM05D006061 ORTHO05D007450 2.7e-136 490.0 623 45.6
SalBow6G4925 Salvia bowleyana HOM05D006061 ORTHO05D007450 4.6e-136 489.2 618 46.0
Medtr7g099450 Medicago truncatula HOM05D006061 ORTHO05D007450 1.7e-135 487.3 622 47.1
PSO170G3920 Papaver somniferum HOM05D006061 ORTHO05D007450 3.3e-134 483.0 629 45.2
Nitab4.5_0006211g0030 Nicotiana tabacum HOM05D006061 ORTHO05D007450 7.3e-134 481.9 625 45.3
Nitab4.5_0002085g0150 Nicotiana tabacum HOM05D006061 ORTHO05D007450 9.6e-134 481.5 625 45.3
Ah.15g093400 Amaranthus hybridus HOM05D006061 ORTHO05D007450 3.6e-133 479.6 620 45.3
MBI07_g08916_MAGBIO Magnolia biondii HOM05D006061 ORTHO05D007450 6.2e-133 478.8 626 43.8
Manes.12G040800 Manihot esculenta HOM05D006061 ORTHO05D007450 8.1e-133 478.4 483 55.7
Lj1A80G16 Lonicera japonica HOM05D006061 ORTHO05D007450 2.0e-131 473.8 655 42.9
Aqoxy5G00054 Aquilegia oxysepala HOM05D006061 ORTHO05D007450 5.8e-131 472.2 627 45.1
Peaxi162Scf00517g00313 Petunia axillaris HOM05D006061 ORTHO05D007450 2.4e-129 466.8 646 44.0
CAN.G771.51 Capsicum annuum HOM05D006061 ORTHO05D007450 3.2e-129 466.5 638 44.0
Rhsim13G0041800 Rhododendron simsii HOM05D006061 ORTHO05D000758 7.1e-129 465.3 714 39.6
HanXRQChr13g0409031 Helianthus annuus HOM05D006061 ORTHO05D007450 2.1e-125 453.8 605 43.0
CARHR110700 Cardamine hirsuta HOM05D006061 ORTHO05D007450 3.8e-122 443.0 271 83.0
Lsat_1_v5_gn_8_90281 Lactuca sativa HOM05D006061 ORTHO05D007450 1.3e-114 417.9 616 41.2
FAN27G0211 Fragaria x ananassa HOM05D006061 ORTHO05D007450 4.8e-109 399.4 603 42.0
ECA236G2978 Erigeron canadensis HOM05D006061 ORTHO05D000758 6.2e-109 399.1 608 40.3
ATR0787G120 Amborella trichopoda HOM05D006061 ORTHO05D007450 1.8e-103 380.9 657 40.2
vmacro02729 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 3.8e-98 363.2 396 52.5
Cc01_g08490 Coffea canephora HOM05D006061 ORTHO05D007450 3.0e-95 353.6 472 44.9
Lalb_Chr01g0019421 Lupinus albus HOM05D006061 ORTHO05D007450 6.9e-92 342.4 368 50.8
AUR62025388 Chenopodium quinoa HOM05D006061 ORTHO05D007450 1.7e-90 337.8 408 48.5
FAN15G2648 Fragaria x ananassa HOM05D006061 ORTHO05D007450 3.0e-87 327.0 393 48.9
CSS0041718 Camellia sinensis var. sinensis HOM05D006061 ORTHO05D007450 1.1e-84 318.5 329 54.4
Cpa.g.sc8.207 Carica papaya HOM05D006061 ORTHO05D007450 2.0e-75 287.7 279 56.6
Sed0025129 Sechium edule HOM05D006061 ORTHO05D007450 1.0e-74 285.4 318 52.2
Cpa.g.sc8.208 Carica papaya HOM05D006061 ORTHO05D007450 3.8e-74 283.5 287 51.2
VMungo1383G3365 Vigna mungo HOM05D006061 ORTHO05D007450 1.6e-72 278.1 321 51.4
MELO3C024149.2 Cucumis melo HOM05D006061 ORTHO05D007450 2.6e-62 244.2 279 52.0
Lalb_Chr01g0019411 Lupinus albus HOM05D006061 ORTHO05D007450 1.3e-50 205.3 226 53.1
VMungo1383G3184 Vigna mungo HOM05D006061 ORTHO05D007450 5.0e-50 203.4 234 46.6
SEGI_05721 Sequoiadendron giganteum HOM05D006061 ORTHO05D007450 9.5e-49 199.1 336 38.7
Oeu039640.1 Olea europaea HOM05D006061 ORTHO05D007450 2.8e-48 197.6 226 50.4
Pp3c7_21970 Physcomitrium patens HOM05D006061 ORTHO05D007450 1.8e-47 194.9 614 26.1
SMO356G0042 Selaginella moellendorffii HOM05D006061 ORTHO05D007450 5.4e-44 183.3 609 28.6
CARHR174390 Cardamine hirsuta HOM05D006061 ORTHO05D007450 1.1e-39 169.1 101 82.2
Zm00001eb133830 Zea mays HOM05D006061 ORTHO05D007450 3.4e-38 164.1 265 40.4
unitig_8.g4624 Utricularia gibba HOM05D006061 ORTHO05D007450 7.5e-38 162.9 273 40.3
DCAR_004700 Daucus carota HOM05D000065 ORTHO05D007450 3.7e-37 160.6 407 33.7
vmacro02728 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 9.5e-33 146.0 284 31.3
HPP92_014830 Vanilla planifolia HOM05D006061 ORTHO05D007450 4.0e-31 140.6 427 29.3
Phvul.004G074200 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 5.1e-26 123.6 139 54.7
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 6.6e-26 123.2 119 49.6
Psat0ss8385g0040 Pisum sativum HOM05D006061 ORTHO05D007450 5.6e-25 120.2 130 42.3
Os12g0228900 Oryza sativa ssp. japonica HOM05D006061 ORTHO05D007450 7.3e-25 119.8 246 34.6
Gohir.D10G064900 Gossypium hirsutum HOM05D006061 ORTHO05D007450 9.6e-25 119.4 114 49.1
CBR_g31999 Chara braunii HOM05D006061 ORTHO05D007450 6.2e-24 116.7 567 24.9
Zm00001eb008990 Zea mays HOM05D006061 ORTHO05D007450 6.2e-24 116.7 139 49.6
Cc00_g31740 Coffea canephora HOM05D006061 ORTHO05D007450 1.1e-23 115.9 152 44.7
Psat1g093320 Pisum sativum HOM05D006061 ORTHO05D007450 3.1e-23 114.4 132 40.2
Oeu039641.2 Olea europaea HOM05D006061 ORTHO05D007450 6.8e-23 113.2 160 35.6
SHI26842 Sapria himalayana HOM05D006061 ORTHO05D007450 2.0e-22 111.7 140 48.6
Zm00001eb428270 Zea mays HOM05D006061 ORTHO05D007450 4.2e-20 104.0 147 46.3
Zm00001eb120120 Zea mays HOM05D006061 ORTHO05D007450 1.6e-19 102.1 125 50.4
SHI26843 Sapria himalayana HOM05D006061 ORTHO05D007450 1.5e-17 95.5 137 40.9
PSO675G3076 Papaver somniferum HOM05D006061 ORTHO05D007450 8.1e-16 89.7 380 28.9
Rhsim13G0055400 Rhododendron simsii HOM05D006061 ORTHO05D007450 6.9e-15 86.7 124 43.5
Zm00001eb399320 Zea mays HOM05D000103 ORTHO05D007450 6.0e-11 73.6 101 46.5
Zm00001eb068850 Zea mays HOM05D006061 ORTHO05D007450 5.6e-09 67.0 95 45.3
CDE09G0654 Ceratophyllum demersum HOM05D006061 ORTHO05D007450 4.5e-06 57.4 77 35.1


User provided reference genes

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