Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 6.9e-232 807.0 418 100.0
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 1.2e-188 663.3 369 94.6
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 2.2e-185 652.5 369 93.2
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 1.2e-154 550.4 374 78.1
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 3.9e-150 535.4 357 79.3
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 5.2e-131 471.9 403 69.2
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 3.0e-118 429.5 372 68.5
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 1.2e-114 417.5 424 61.6
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 1.3e-97 360.9 357 61.9
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 3.8e-97 359.4 401 58.6
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 2.3e-94 350.1 422 56.2
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 3.1e-67 260.0 175 73.7
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 1.6e-63 247.7 281 57.7
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 1.6e-63 247.7 281 57.7
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 1.0e-62 245.0 303 49.2
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 1.1e-59 235.0 350 47.4
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 1.2e-53 214.9 136 73.5
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 6.1e-47 192.6 271 43.2
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 4.0e-46 189.9 327 39.4
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 1.2e-45 188.3 261 47.5
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 1.7e-44 184.5 266 43.2
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 2.2e-44 184.1 168 56.0
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 2.9e-44 183.7 230 45.7
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 4.9e-44 183.0 134 64.9
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 6.4e-44 182.6 157 59.2
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.4e-43 181.4 141 64.5
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 1.8e-43 181.0 154 57.1
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 1.8e-43 181.0 154 57.1
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 3.2e-43 180.3 134 63.4
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 4.1e-43 179.9 134 64.2
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 4.1e-43 179.9 129 65.1
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 2.0e-42 177.6 121 70.2
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.0e-42 177.6 165 53.9
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 2.0e-42 177.6 124 66.9
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 2.7e-42 177.2 169 53.8
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 2.7e-42 177.2 165 53.9
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.7e-42 177.2 165 53.9
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 4.6e-42 176.4 167 56.3
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 4.6e-42 176.4 120 70.0
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 4.6e-42 176.4 120 70.0
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 6.0e-42 176.0 160 53.1
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 6.0e-42 176.0 204 50.5
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.7e-41 174.5 141 62.4
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 2.3e-41 174.1 120 69.2
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 8.6e-41 172.2 123 65.0
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 1.1e-40 171.8 129 64.3
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 1.9e-40 171.0 125 68.0
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 1.9e-40 171.0 117 67.5
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 1.9e-40 171.0 257 43.6
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 4.3e-40 169.9 142 57.0
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 9.5e-40 168.7 152 55.3
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 9.5e-40 168.7 270 41.1
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 1.2e-39 168.3 134 59.7
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 1.6e-39 167.9 231 43.7
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 2.1e-39 167.5 153 56.2
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 2.1e-39 167.5 153 56.2
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 2.1e-39 167.5 115 68.7
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 2.8e-39 167.2 141 57.4
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 4.7e-39 166.4 121 66.1
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 8.0e-39 165.6 132 60.6
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 1.1e-38 165.2 278 38.1
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 1.8e-38 164.5 119 67.2
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 1.8e-38 164.5 119 67.2
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 1.8e-38 164.5 131 62.6
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.8e-38 164.5 120 63.3
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 2.3e-38 164.1 123 62.6
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 3.1e-38 163.7 120 66.7
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 4.0e-38 163.3 132 60.6
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 6.8e-38 162.5 132 58.3
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 6.8e-38 162.5 132 58.3
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 1.2e-37 161.8 301 36.5
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.0e-37 161.0 139 56.1
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 3.4e-37 160.2 318 34.9
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 7.5e-37 159.1 123 60.2
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 7.5e-37 159.1 166 53.0
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 7.5e-37 159.1 166 53.0
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 9.8e-37 158.7 142 59.9
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 9.8e-37 158.7 139 56.1
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 9.8e-37 158.7 139 56.1
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 9.8e-37 158.7 139 56.1
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 9.8e-37 158.7 139 56.1
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 9.8e-37 158.7 155 52.3
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 1.3e-36 158.3 139 58.3
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.3e-36 158.3 123 60.2
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 1.3e-36 158.3 112 68.8
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 2.2e-36 157.5 148 49.3
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 2.2e-36 157.5 121 56.2
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 2.2e-36 157.5 121 57.0
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 6.4e-36 156.0 245 39.2
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 1.1e-35 155.2 146 54.1
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 1.9e-35 154.5 108 64.8
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 2.4e-35 154.1 136 55.9
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 5.4e-35 152.9 108 63.9
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 7.0e-35 152.5 144 56.2
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.6e-34 151.4 154 50.6
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 3.5e-34 150.2 144 54.9
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 4.6e-34 149.8 133 55.6
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 4.6e-34 149.8 123 61.0
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 6.0e-34 149.4 132 54.5
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 1.0e-33 148.7 292 36.3
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 1.0e-33 148.7 282 37.2
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 1.0e-33 148.7 135 53.3
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.3e-33 148.3 129 58.9
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 1.3e-33 148.3 113 61.1
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 1.7e-33 147.9 244 42.6
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 3.9e-33 146.7 129 54.3
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 2.5e-32 144.1 149 51.0
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 1.2e-31 141.7 153 49.0
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 1.4e-30 138.3 167 47.9
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 3.1e-30 137.1 112 55.4
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 4.0e-30 136.7 121 55.4
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 5.2e-30 136.3 142 49.3
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 7.5e-29 132.5 146 47.9
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 4.9e-28 129.8 123 52.0
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 8.3e-28 129.0 139 46.8
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 3.2e-27 127.1 101 59.4
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 2.3e-25 120.9 171 40.4
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 3.0e-25 120.6 140 46.4
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 3.9e-25 120.2 66 87.9
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 6.6e-25 119.4 95 58.9
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 7.3e-24 115.9 101 55.4
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 1.2e-23 115.2 139 46.0
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 3.6e-23 113.6 105 48.6
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 1.8e-22 111.3 142 42.3
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 4.4e-21 106.7 139 39.6
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 1.9e-19 101.3 101 42.6
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 1.7e-17 94.7 66 68.2
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 6.6e-17 92.8 102 46.1
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 5.6e-16 89.7 76 56.6
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 1.2e-15 88.6 101 49.5
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 1.6e-15 88.2 107 45.8
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 2.1e-15 87.8 75 52.0
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 3.6e-15 87.0 66 62.1
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 4.7e-15 86.7 103 47.6
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 6.2e-15 86.3 62 64.5
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 6.2e-15 86.3 67 61.2
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 5.2e-14 83.2 273 34.4
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.6e-13 80.9 78 52.6
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 3.8e-12 77.0 66 50.0
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.1e-11 75.5 63 52.4
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 1.9e-11 74.7 89 44.9
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 1.2e-10 72.0 63 52.4
AagrBONN_evm.TU.Sc2ySwM_228.991 Anthoceros agrestis HOM05D004639 ORTHO05D005201 9.6e-08 62.4 47 59.6
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 2.4e-06 57.8 102 39.2


User provided reference genes

Program Settings