Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36644 Brassica carinata HOM05D004686 ORTHO05D005988 4.8e-82 307.8 154 100.0
BolC7t40596H Brassica oleracea HOM05D004686 ORTHO05D005988 4.8e-82 307.8 154 100.0
BcaC05g28207 Brassica carinata HOM05D004686 ORTHO05D005988 2.7e-72 275.4 178 81.5
C05p43110 Brassica napus HOM05D004686 ORTHO05D005988 2.7e-72 275.4 178 81.5
BolC5t33041H Brassica oleracea HOM05D004686 ORTHO05D005988 2.7e-72 275.4 178 81.5
Sp3g18970 Schrenkiella parvula HOM05D004686 ORTHO05D005988 2.7e-72 275.4 178 81.5
A05p27770 Brassica napus HOM05D004686 ORTHO05D005988 5.9e-72 274.2 178 80.9
BraA05t21664Z Brassica rapa HOM05D004686 ORTHO05D005988 5.9e-72 274.2 178 80.9
BcaB06g26171 Brassica carinata HOM05D004686 ORTHO05D005988 7.7e-72 273.9 178 80.9
AT3G20970 Arabidopsis thaliana HOM05D004686 ORTHO05D005988 1.0e-71 273.5 178 80.9
Thhalv10021272m.g Eutrema salsugineum HOM05D004686 ORTHO05D005988 1.7e-71 272.7 178 79.8
Carub.0003s2093 Capsella rubella HOM05D004686 ORTHO05D005988 2.9e-71 271.9 178 79.8
CARHR096860 Cardamine hirsuta HOM05D004686 ORTHO05D005988 6.5e-71 270.8 178 79.8
THA.LOC104816877 Tarenaya hassleriana HOM05D004686 ORTHO05D005988 1.8e-68 262.7 178 75.8
Carub.0001s4026 Capsella rubella HOM05D004686 ORTHO05D005988 4.0e-68 261.5 178 77.0
BcaC08g43308 Brassica carinata HOM05D004686 ORTHO05D005988 1.2e-67 260.0 178 75.8
A06p02520 Brassica napus HOM05D004686 ORTHO05D005988 1.2e-67 260.0 178 75.3
C06p06550 Brassica napus HOM05D004686 ORTHO05D005988 1.2e-67 260.0 178 75.8
Thhalv10011711m.g Eutrema salsugineum HOM05D004686 ORTHO05D005988 1.2e-67 260.0 178 76.4
QL04p044815 Quercus lobata HOM05D004686 ORTHO05D005988 1.2e-67 260.0 178 74.7
BcaB07g33585 Brassica carinata HOM05D004686 ORTHO05D005988 1.5e-67 259.6 178 75.3
C07p01900 Brassica napus HOM05D004686 ORTHO05D005988 1.5e-67 259.6 130 99.2
BraA06t23459Z Brassica rapa HOM05D004686 ORTHO05D005988 1.5e-67 259.6 178 75.3
CARHR041540 Cardamine hirsuta HOM05D004686 ORTHO05D005988 2.6e-67 258.8 178 75.8
CiPaw.13G038400 Carya illinoinensis HOM05D004686 ORTHO05D005988 2.6e-67 258.8 178 75.3
Sp1g38060 Schrenkiella parvula HOM05D004686 ORTHO05D005988 2.6e-67 258.8 178 75.3
AT1G51390 Arabidopsis thaliana HOM05D004686 ORTHO05D005988 4.4e-67 258.1 178 75.8
BolC6t35767H Brassica oleracea HOM05D004686 ORTHO05D005988 7.5e-67 257.3 178 75.3
AL1G59240 Arabidopsis lyrata HOM05D004686 ORTHO05D005988 9.8e-67 256.9 178 75.3
Ciclev10032367m.g Citrus clementina HOM05D004686 ORTHO05D005988 1.3e-66 256.5 178 74.2
Haze_14265 Corylus avellana HOM05D004686 ORTHO05D005988 1.3e-66 256.5 178 75.3
RcHm_v2.0_Chr2g0118911 Rosa chinensis HOM05D004686 ORTHO05D005988 2.8e-66 255.4 178 74.7
Manes.10G058150 Manihot esculenta HOM05D004686 ORTHO05D005988 3.7e-66 255.0 178 75.3
THA.LOC104817910 Tarenaya hassleriana HOM05D004686 ORTHO05D005988 6.3e-66 254.2 178 74.7
Cfa007809 Carpinus fangiana HOM05D004686 ORTHO05D005988 1.4e-65 253.1 178 74.2
Cpa.g.sc563.1 Carica papaya HOM05D004686 ORTHO05D005988 1.8e-65 252.7 178 74.7
Lj2C31G19 Lonicera japonica HOM05D004686 ORTHO05D005988 1.8e-65 252.7 178 73.0
Ah.12g062170 Amaranthus hybridus HOM05D004686 ORTHO05D005988 3.1e-65 251.9 178 74.2
CANSAT56G3264 Cannabis sativa HOM05D004686 ORTHO05D005988 3.1e-65 251.9 178 73.6
GSVIVG01011272001 Vitis vinifera HOM05D004686 ORTHO05D005988 4.1e-65 251.5 178 72.5
Eucgr.G02697 Eucalyptus grandis HOM05D004686 ORTHO05D005988 9.1e-65 250.4 178 73.6
FvH4_1g23510 Fragaria vesca HOM05D004686 ORTHO05D005988 9.1e-65 250.4 178 73.6
Rhsim03G0100800 Rhododendron simsii HOM05D004686 ORTHO05D005988 9.1e-65 250.4 178 72.5
TAR633G2407 Trochodendron aralioides HOM05D004686 ORTHO05D005988 9.1e-65 250.4 178 72.5
Sed0018572 Sechium edule HOM05D004686 ORTHO05D005988 1.2e-64 250.0 178 73.6
Aa31LG10G3560 Aethionema arabicum HOM05D004686 ORTHO05D005988 1.6e-64 249.6 178 72.5
Psat6g239000 Pisum sativum HOM05D004686 ORTHO05D005988 1.6e-64 249.6 178 70.8
TWI63G0038 Tripterygium wilfordii HOM05D004686 ORTHO05D005988 1.6e-64 249.6 178 73.6
Actinidia34718 Actinidia chinensis HOM05D004686 ORTHO05D005988 2.0e-64 249.2 178 71.9
arahy.Tifrunner.gnm1.ann1.GZ7TSK Arachis hypogaea HOM05D004686 ORTHO05D005988 2.0e-64 249.2 178 73.0
arahy.Tifrunner.gnm1.ann1.R2EQ4U Arachis hypogaea HOM05D004686 ORTHO05D005988 2.0e-64 249.2 178 73.0
Dinv02032 Davidia involucrata HOM05D004686 ORTHO05D005988 2.0e-64 249.2 178 72.5
Dinv11852 Davidia involucrata HOM05D004686 ORTHO05D005988 2.7e-64 248.8 178 72.5
Duzib128G0508 Durio zibethinus HOM05D004686 ORTHO05D005988 2.7e-64 248.8 178 71.3
DCAR_019313 Daucus carota HOM05D004686 ORTHO05D005988 3.5e-64 248.4 178 72.5
Gohir.D05G288800 Gossypium hirsutum HOM05D004686 ORTHO05D005988 3.5e-64 248.4 178 71.9
Gorai.009G303900 Gossypium raimondii HOM05D004686 ORTHO05D005988 3.5e-64 248.4 178 71.9
HanXRQChr07g0194231 Helianthus annuus HOM05D004686 ORTHO05D005988 3.5e-64 248.4 178 71.3
MD04G1028700 Malus domestica HOM05D004686 ORTHO05D005988 3.5e-64 248.4 178 72.5
Medtr1g069215 Medicago truncatula HOM05D004686 ORTHO05D005988 3.5e-64 248.4 178 70.8
Sc20g0001200 Simmondsia chinensis HOM05D004686 ORTHO05D005988 3.5e-64 248.4 178 71.3
TPR.G10412 Trifolium pratense HOM05D004686 ORTHO05D005988 3.5e-64 248.4 178 70.8
Medtr3g073070 Medicago truncatula HOM05D004686 ORTHO05D005988 4.5e-64 248.1 178 70.2
Thecc.10G107700 Theobroma cacao HOM05D004686 ORTHO05D005988 4.5e-64 248.1 178 72.5
HanXRQChr11g0342241 Helianthus annuus HOM05D004686 ORTHO05D005988 5.9e-64 247.7 178 71.3
Potri.010G237400 Populus trichocarpa HOM05D004686 ORTHO05D005988 5.9e-64 247.7 178 71.3
AUR62037089 Chenopodium quinoa HOM05D004686 ORTHO05D005988 7.7e-64 247.3 178 71.9
Dinv09596 Davidia involucrata HOM05D004686 ORTHO05D005988 7.7e-64 247.3 178 71.9
PGR142G2157 Punica granatum HOM05D004686 ORTHO05D005988 7.7e-64 247.3 178 71.3
MELO3C019892.2 Cucumis melo HOM05D004686 ORTHO05D005988 1.0e-63 246.9 178 73.0
CsaV3_6G004170 Cucumis sativus L. HOM05D004686 ORTHO05D005988 1.0e-63 246.9 178 73.0
ECA238G0678 Erigeron canadensis HOM05D004686 ORTHO05D005988 1.0e-63 246.9 178 71.9
ClCG08G008200 Citrullus lanatus HOM05D004686 ORTHO05D005988 1.3e-63 246.5 178 72.5
Gohir.A05G287600 Gossypium hirsutum HOM05D004686 ORTHO05D005988 1.3e-63 246.5 178 71.3
Prupe.2G079800 Prunus persica HOM05D004686 ORTHO05D005988 1.3e-63 246.5 178 71.3
Sabra10G0185800 Salix brachista HOM05D001373 ORTHO05D005988 1.3e-63 246.5 178 71.9
Zm00001eb346110 Zea mays HOM05D004686 ORTHO05D005988 1.3e-63 246.5 178 71.9
EL10Ac5g11629 Beta vulgaris HOM05D004686 ORTHO05D005988 1.7e-63 246.1 178 73.0
Atru.chr12.1003 Acer truncatum HOM05D004686 ORTHO05D005988 2.9e-63 245.4 178 70.8
Atru.chr4.937 Acer truncatum HOM05D004686 ORTHO05D005988 2.9e-63 245.4 178 71.3
Lsat_1_v5_gn_2_104981 Lactuca sativa HOM05D004686 ORTHO05D005988 3.8e-63 245.0 178 70.8
Phvul.007G008000 Phaseolus vulgaris HOM05D004686 ORTHO05D005988 3.8e-63 245.0 178 70.2
SalBow6G2690 Salvia bowleyana HOM05D004686 ORTHO05D005988 3.8e-63 245.0 178 71.9
TAR636G3245 Trochodendron aralioides HOM05D004686 ORTHO05D005988 3.8e-63 245.0 178 71.9
VMungo0720G1764 Vigna mungo HOM05D004686 ORTHO05D005988 5.0e-63 244.6 178 70.8
arahy.Tifrunner.gnm1.ann1.XFSN2Q Arachis hypogaea HOM05D004686 ORTHO05D005988 8.6e-63 243.8 178 71.3
Glyma.20G242200 Glycine max HOM05D004686 ORTHO05D005988 8.6e-63 243.8 178 71.3
MSTRG.9090 Avicennia marina HOM05D004686 ORTHO05D005988 1.1e-62 243.4 178 69.7
Nn5g28600 Nelumbo nucifera HOM05D004686 ORTHO05D005988 1.1e-62 243.4 178 71.3
ATR0820G097 Amborella trichopoda HOM05D004686 ORTHO05D005988 1.5e-62 243.0 178 71.3
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 1.5e-62 243.0 178 69.1
Aqoxy3G00701 Aquilegia oxysepala HOM05D004686 ORTHO05D005988 2.5e-62 242.3 178 70.8
CAN.G730.34 Capsicum annuum HOM05D004686 ORTHO05D005988 2.5e-62 242.3 178 69.7
FAN28G2368 Fragaria x ananassa HOM05D004686 ORTHO05D005988 2.5e-62 242.3 194 67.5
Os05g0155300 Oryza sativa ssp. japonica HOM05D004686 ORTHO05D005988 2.5e-62 242.3 178 70.8
PSO339G5017 Papaver somniferum HOM05D004686 ORTHO05D005988 2.5e-62 242.3 178 69.1
Rhsim09G0142900 Rhododendron simsii HOM05D004686 ORTHO05D005988 2.5e-62 242.3 178 71.3
Migut.F00905 Erythranthe guttata HOM05D004686 ORTHO05D005988 3.3e-62 241.9 178 69.7
FAN26G2913 Fragaria x ananassa HOM05D004686 ORTHO05D005988 5.5e-62 241.1 194 67.0
PSO384G4844 Papaver somniferum HOM05D004686 ORTHO05D005988 5.5e-62 241.1 178 68.5
FAN19G3154 Fragaria x ananassa HOM05D004686 ORTHO05D005988 7.2e-62 240.7 194 67.0
Lj5g0008296 Lotus japonicus HOM05D004686 ORTHO05D005988 9.5e-62 240.4 178 69.7
unitig_0.g763 Utricularia gibba HOM05D004686 ORTHO05D005988 9.5e-62 240.4 178 68.5
Lalb_Chr06g0164101 Lupinus albus HOM05D004686 ORTHO05D005988 1.2e-61 240.0 180 71.7
Solyc11g007120.2 Solanum lycopersicum HOM05D004686 ORTHO05D005988 1.6e-61 239.6 178 68.5
Sopen11g003040 Solanum pennellii HOM05D004686 ORTHO05D005988 1.6e-61 239.6 178 68.5
Peaxi162Scf00173g00068 Petunia axillaris HOM05D004686 ORTHO05D005988 2.1e-61 239.2 178 69.1
Nitab4.5_0003774g0030 Nicotiana tabacum HOM05D004686 ORTHO05D005988 2.8e-61 238.8 178 69.7
HPP92_001974 Vanilla planifolia HOM05D004686 ORTHO05D005988 2.8e-61 238.8 178 70.8
arahy.Tifrunner.gnm1.ann1.N4KLNP Arachis hypogaea HOM05D004686 ORTHO05D005988 3.6e-61 238.4 178 69.7
Nitab4.5_0001437g0190 Nicotiana tabacum HOM05D004686 ORTHO05D005988 3.6e-61 238.4 178 69.7
Sabra08G0014900 Salix brachista HOM05D004686 ORTHO05D005988 8.0e-61 237.3 178 69.1
SGA_v2.0_scaffold62G21346 Striga asiatica HOM05D004686 ORTHO05D005988 8.0e-61 237.3 178 68.5
Pp3c3_25460 Physcomitrium patens HOM05D004686 ORTHO05D005988 2.3e-60 235.7 178 69.7
PGSC0003DMG400019464 Solanum tuberosum HOM05D004686 ORTHO05D005988 2.3e-60 235.7 178 67.4
Aqoxy2G01234 Aquilegia oxysepala HOM05D004686 ORTHO05D005988 4.0e-60 235.0 178 69.1
BcaC05g26273 Brassica carinata HOM05D004686 ORTHO05D005988 5.2e-60 234.6 167 76.6
Oeu030507.2 Olea europaea HOM05D004686 ORTHO05D005988 6.8e-60 234.2 213 60.6
Mapoly0010s0052 Marchantia polymorpha HOM05D004686 ORTHO05D005988 2.6e-59 232.3 178 66.9
Cc02_g09830 Coffea canephora HOM05D004686 ORTHO05D005988 9.8e-59 230.3 178 66.3
SMO119G0422 Selaginella moellendorffii HOM05D004686 ORTHO05D005988 2.2e-58 229.2 178 66.3
AagrBONN_evm.TU.Sc2ySwM_362.2258 Anthoceros agrestis HOM05D004686 ORTHO05D005988 2.9e-55 218.8 178 62.9
AUR62038365 Chenopodium quinoa HOM05D004686 ORTHO05D005988 1.9e-54 216.1 129 82.2
Oeu030509.1 Olea europaea HOM05D004686 ORTHO05D005988 2.5e-54 215.7 129 82.2
SEGI_01464 Sequoiadendron giganteum HOM05D004686 ORTHO05D005988 4.3e-54 214.9 164 66.5
CBR_g48305 Chara braunii HOM05D004686 ORTHO05D005988 4.7e-53 211.5 178 61.2
Migut.F01616 Erythranthe guttata HOM05D004686 ORTHO05D005988 6.8e-52 207.6 178 64.0
AagrBONN_evm.TU.Sc2ySwM_117.1090 Anthoceros agrestis HOM05D004686 ORTHO05D005988 2.6e-51 205.7 131 75.6
Cre12.g504150 Chlamydomonas reinhardtii HOM05D004686 ORTHO05D005988 3.2e-49 198.7 178 56.2
AagrBONN_evm.TU.Sc2ySwM_117.3971 Anthoceros agrestis HOM05D004686 ORTHO05D005988 4.1e-49 198.4 131 74.8
CDE08G1288 Ceratophyllum demersum HOM05D004686 ORTHO05D005988 2.7e-48 195.7 131 74.0
Pp3c10_14710 Physcomitrium patens HOM05D004686 ORTHO05D005988 6.6e-47 191.0 168 61.3
PRCOL_00006553 Prasinoderma coloniale HOM05D004686 ORTHO05D005988 2.5e-46 189.1 178 55.6
MCO10G342 Micromonas commoda HOM05D004686 ORTHO05D005988 9.5e-46 187.2 179 54.2
C05p22850 Brassica napus HOM05D004686 ORTHO05D005988 4.4e-43 178.3 164 62.8
Potri.008G022000 Populus trichocarpa HOM05D004686 ORTHO05D005988 3.6e-37 158.7 130 63.8
CSS0027430 Camellia sinensis var. sinensis HOM05D004686 ORTHO05D005988 3.1e-36 155.6 108 71.3
Haze_26891 Corylus avellana HOM05D004686 ORTHO05D005988 5.4e-33 144.8 181 43.6
Psat3g105760 Pisum sativum HOM05D004686 ORTHO05D005988 1.0e-31 140.6 111 65.8
Cfa026205 Carpinus fangiana HOM05D004686 ORTHO05D005988 3.9e-31 138.7 163 48.5
AagrBONN_evm.TU.Sc2ySwM_117.3974 Anthoceros agrestis HOM05D004686 ORTHO05D005988 3.8e-26 122.1 81 77.8
arahy.Tifrunner.gnm1.ann1.Z3LWFH Arachis hypogaea HOM05D000145 ORTHO05D000115 3.8e-26 122.1 72 81.9
arahy.Tifrunner.gnm1.ann1.0744GE Arachis hypogaea HOM05D000145 ORTHO05D000115 6.4e-26 121.3 71 81.7
Carub.0162s0001 Capsella rubella HOM05D004686 ORTHO05D005988 6.4e-26 121.3 71 81.7
AL3G34930 Arabidopsis lyrata HOM05D004686 ORTHO05D005988 1.9e-25 119.8 63 90.5
Psat7g160920 Pisum sativum HOM05D004686 ORTHO05D005988 4.2e-25 118.6 111 58.6
Nitab4.5_0001437g0120 Nicotiana tabacum HOM05D004686 ORTHO05D005988 6.6e-23 111.3 108 53.7
Rhsim03G0100900 Rhododendron simsii HOM05D004686 ORTHO05D005988 6.9e-20 101.3 118 49.2
CDE06G1789 Ceratophyllum demersum HOM05D004686 ORTHO05D005988 3.8e-18 95.5 154 42.2
BcaB03g16327 Brassica carinata HOM05D002341 ORTHO05D039489 3.0e-15 85.9 56 78.6
BcaB02g10852 Brassica carinata HOM05D004686 ORTHO05D001378 1.4e-12 77.0 44 84.1
C05p35820 Brassica napus HOM05D004686 ORTHO05D027932 2.1e-08 63.2 63 57.1
BolC5t32300H Brassica oleracea HOM05D004686 ORTHO05D027932 2.1e-08 63.2 63 57.1
C09p31040 Brassica napus HOM05D004686 ORTHO05D027932 1.8e-07 60.1 63 55.6
BolC9t55963H Brassica oleracea HOM05D004686 ORTHO05D027932 1.8e-07 60.1 63 55.6
SHI21636 Sapria himalayana HOM05D004686 ORTHO05D005988 1.9e-06 56.6 57 47.4
CSS0011091 Camellia sinensis var. sinensis HOM05D004686 ORTHO05D005988 2.5e-06 56.2 33 81.8
SHI06315 Sapria himalayana HOM05D001005 ORTHO05D000836 9.6e-06 54.3 34 67.6


User provided reference genes

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