Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36642 Brassica carinata HOM05D002129 ORTHO05D002188 1.4e-78 296.6 194 100.0
BolC7t40600H Brassica oleracea HOM05D002129 ORTHO05D002188 1.4e-78 296.6 194 100.0
C07p01920 Brassica napus HOM05D002129 ORTHO05D002188 8.0e-74 280.8 190 97.4
A07p20930 Brassica napus HOM05D002129 ORTHO05D002188 2.0e-53 213.0 190 65.8
Thhalv10027620m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 3.5e-53 212.2 190 64.7
BcaC08g44556 Brassica carinata HOM05D002129 ORTHO05D002188 2.3e-52 209.5 190 65.3
C06p20190 Brassica napus HOM05D001971 ORTHO05D002188 2.3e-52 209.5 190 65.3
BolC6t37203H Brassica oleracea HOM05D002129 ORTHO05D002188 1.6e-50 203.4 190 64.2
BcaC07g39281 Brassica carinata HOM05D002129 ORTHO05D016708 2.0e-48 196.4 137 78.1
AL7G47470 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 9.8e-48 194.1 188 61.2
AT5G41790 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 6.4e-47 191.4 188 60.6
BraA04t17139Z Brassica rapa HOM05D002129 ORTHO05D002188 6.4e-47 191.4 192 66.1
CARHR212780 Cardamine hirsuta HOM05D002129 ORTHO05D002188 3.9e-44 182.2 136 64.7
BcaC02g08917 Brassica carinata HOM05D002129 ORTHO05D002188 1.2e-42 177.2 137 76.6
Carub.0007s3359 Capsella rubella HOM05D002129 ORTHO05D002188 3.1e-41 172.6 188 56.9
C04p49150 Brassica napus HOM05D002129 ORTHO05D002188 2.6e-40 169.5 137 73.7
Aa31LG9G340 Aethionema arabicum HOM05D002129 ORTHO05D002188 2.2e-39 166.4 145 57.2
C08p22900 Brassica napus HOM05D002129 ORTHO05D016708 7.0e-38 161.4 137 71.5
BolC8t49926H Brassica oleracea HOM05D002129 ORTHO05D016708 7.0e-38 161.4 137 71.5
A04p14960 Brassica napus HOM05D002129 ORTHO05D002188 6.0e-37 158.3 137 69.3
BcaB06g27672 Brassica carinata HOM05D002129 ORTHO05D002188 1.3e-31 140.6 137 65.7
CARHR046630 Cardamine hirsuta HOM05D002129 ORTHO05D002188 1.2e-26 124.0 145 55.9
THA.LOC104809341 Tarenaya hassleriana HOM05D002129 ORTHO05D002188 1.6e-26 123.6 148 50.7
Carub.0002s0048 Capsella rubella HOM05D002129 ORTHO05D002188 4.7e-26 122.1 146 52.7
AL2G10610 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 8.1e-26 121.3 146 54.8
AT1G64330 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 9.9e-24 114.4 146 50.7
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 1.4e-22 110.5 136 53.7
CiPaw.11G123900 Carya illinoinensis HOM05D002129 ORTHO05D002188 1.4e-22 110.5 229 36.7
Ciclev10018618m.g Citrus clementina HOM05D002129 ORTHO05D002188 1.9e-22 110.2 230 43.5
Atru.chr9.2042 Acer truncatum HOM05D002129 ORTHO05D002188 2.4e-22 109.8 229 44.1
MD14G1121500 Malus domestica HOM05D002129 ORTHO05D002188 7.1e-22 108.2 222 32.4
CiPaw.12G085000 Carya illinoinensis HOM05D002129 ORTHO05D002188 7.8e-21 104.8 229 32.3
MD06G1102300 Malus domestica HOM05D002129 ORTHO05D002188 1.7e-20 103.6 229 31.4
Haze_08667 Corylus avellana HOM05D002129 ORTHO05D002188 5.1e-20 102.1 229 42.8
Rhsim07G0084000 Rhododendron simsii HOM05D002129 ORTHO05D002188 4.3e-19 99.0 230 30.4
Sp2g00430 Schrenkiella parvula HOM05D002129 ORTHO05D002188 5.6e-19 98.6 136 49.3
Cfa012842 Carpinus fangiana HOM05D002129 ORTHO05D002188 7.3e-19 98.2 229 41.9
vmacro13912 Vaccinium macrocarpon HOM05D002129 ORTHO05D002188 8.1e-18 94.7 227 33.9
Thhalv10023387m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 1.8e-17 93.6 136 48.5
TAR374G1003 Trochodendron aralioides HOM05D002129 ORTHO05D002188 8.9e-17 91.3 229 34.5
BcaC04g22559 Brassica carinata HOM05D002129 ORTHO05D002188 2.0e-16 90.1 132 46.2
C09p17910 Brassica napus HOM05D002129 ORTHO05D002188 2.0e-16 90.1 132 46.2
Manes.10G064266 Manihot esculenta HOM05D002129 ORTHO05D002188 2.6e-16 89.7 144 43.1
Sed0022097 Sechium edule HOM05D002129 ORTHO05D002188 7.6e-16 88.2 230 32.6
Sabra01G0070100 Salix brachista HOM05D002129 ORTHO05D002188 1.3e-15 87.4 206 33.5
A09p14790 Brassica napus HOM05D002129 ORTHO05D002188 1.7e-15 87.0 135 45.2
BcaB07g31455 Brassica carinata HOM05D002129 ORTHO05D002188 2.2e-15 86.7 136 45.6
QL02p031434 Quercus lobata HOM05D002129 ORTHO05D002188 2.9e-15 86.3 205 34.6
TWI60G1278 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 4.9e-15 85.5 230 33.5
MSTRG.1816 Avicennia marina HOM05D002129 ORTHO05D002188 3.2e-14 82.8 230 34.3
Gorai.006G207900 Gossypium raimondii HOM05D002129 ORTHO05D002188 4.2e-14 82.4 230 30.0
BcaC02g11041 Brassica carinata HOM05D002129 ORTHO05D016708 5.4e-14 82.0 79 62.0
Manes.01G045900 Manihot esculenta HOM05D002129 ORTHO05D002188 5.4e-14 82.0 223 33.6
Actinidia22719 Actinidia chinensis HOM05D002129 ORTHO05D002188 6.0e-13 78.6 191 30.9
SGA_v2.0_scaffold96G28980 Striga asiatica HOM05D002129 ORTHO05D002188 6.0e-13 78.6 212 26.9
Prupe.5G115300 Prunus persica HOM05D002129 ORTHO05D002188 6.6e-12 75.1 229 31.0
Thecc.03G293200 Theobroma cacao HOM05D002129 ORTHO05D002188 6.6e-12 75.1 180 30.6
GSVIVG01019499001 Vitis vinifera HOM05D002129 ORTHO05D002188 1.5e-11 73.9 188 28.2
Ah.07g197190 Amaranthus hybridus HOM05D002129 ORTHO05D002188 1.9e-11 73.6 215 26.5
BolC9t54688H Brassica oleracea HOM05D002129 ORTHO05D002188 2.5e-11 73.2 121 43.0
CSS0045654 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 2.5e-11 73.2 214 34.1
AUR62019808 Chenopodium quinoa HOM05D002129 ORTHO05D002188 4.3e-11 72.4 228 26.3
Ca_17494_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 4.3e-11 72.4 185 38.4
SalBow1G3214 Salvia bowleyana HOM05D002129 ORTHO05D002188 4.3e-11 72.4 237 25.3
AUR62010809 Chenopodium quinoa HOM05D002129 ORTHO05D002188 5.6e-11 72.0 228 25.9
DCAR_005027 Daucus carota HOM05D002129 ORTHO05D002188 5.6e-11 72.0 213 26.3
Sopen08g030310 Solanum pennellii HOM05D002129 ORTHO05D002188 5.6e-11 72.0 244 25.8
unitig_52.g17439 Utricularia gibba HOM05D002129 ORTHO05D002188 9.6e-11 71.2 216 25.5
Gohir.A09G190800 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.3e-10 70.9 182 28.6
Gohir.D09G185400 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.3e-10 70.9 230 28.7
Medtr8g099290 Medicago truncatula HOM05D002129 ORTHO05D002188 1.3e-10 70.9 223 32.3
MELO3C016308.2 Cucumis melo HOM05D002129 ORTHO05D002188 2.1e-10 70.1 229 29.3
COL.COLO4_21718 Corchorus olitorius HOM05D002129 ORTHO05D002188 8.1e-10 68.2 183 39.3
Potri.001G094200 Populus trichocarpa HOM05D002129 ORTHO05D002188 8.1e-10 68.2 173 26.6
Duzib068G1418 Durio zibethinus HOM05D002129 ORTHO05D002188 1.1e-09 67.8 174 29.9
Gohir.A02G102200 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.1e-09 67.8 171 36.3
Potri.003G137400 Populus trichocarpa HOM05D002129 ORTHO05D002188 1.1e-09 67.8 171 26.9
CANSAT21G2383 Cannabis sativa HOM05D002129 ORTHO05D002188 1.4e-09 67.4 158 31.0
Manes.02G012600 Manihot esculenta HOM05D002129 ORTHO05D002188 1.4e-09 67.4 226 29.6
Sabra03G0098900 Salix brachista HOM05D002129 ORTHO05D002188 1.4e-09 67.4 172 26.7
Lsat_1_v5_gn_6_85821 Lactuca sativa HOM05D002129 ORTHO05D002188 1.8e-09 67.0 220 32.7
Lalb_Chr16g0390551 Lupinus albus HOM05D002129 ORTHO05D002188 1.8e-09 67.0 229 27.9
Ca_17495_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 3.1e-09 66.2 216 44.0
Gohir.D03G081900 Gossypium hirsutum HOM05D002129 ORTHO05D002188 3.1e-09 66.2 226 35.8
Gorai.003G081700 Gossypium raimondii HOM05D002129 ORTHO05D002188 3.1e-09 66.2 226 29.2
Dinv37550 Davidia involucrata HOM05D002129 ORTHO05D002188 4.0e-09 65.9 180 30.0
Solyc08g082010.3 Solanum lycopersicum HOM05D002129 ORTHO05D002188 4.0e-09 65.9 235 25.5
TPR.G3412 Trifolium pratense HOM05D002129 ORTHO05D002188 9.0e-09 64.7 227 30.0
Ah.12g052310 Amaranthus hybridus HOM05D002129 ORTHO05D002188 2.6e-08 63.2 217 26.7
Duzib084G0891 Durio zibethinus HOM05D002129 ORTHO05D002188 2.6e-08 63.2 177 26.6
CsaV3_4G006420 Cucumis sativus L. HOM05D002129 ORTHO05D002188 4.5e-08 62.4 229 28.8
ClCG07G014890 Citrullus lanatus HOM05D002129 ORTHO05D002188 9.9e-08 61.2 229 27.9
Oeu061087.1 Olea europaea HOM05D002129 ORTHO05D002188 9.9e-08 61.2 192 34.4
Dinv37551 Davidia involucrata HOM05D002129 ORTHO05D002188 1.7e-07 60.5 200 24.5
Peaxi162Scf00074g01134 Petunia axillaris HOM05D002129 ORTHO05D002188 1.7e-07 60.5 227 28.2
Gohir.D04G079828 Gossypium hirsutum HOM05D002129 ORTHO05D002188 2.2e-07 60.1 142 40.8
Glyma.08G021400 Glycine max HOM05D002129 ORTHO05D002188 3.8e-07 59.3 230 27.4
Dinv38857 Davidia involucrata HOM05D002129 ORTHO05D002188 6.4e-07 58.5 198 24.7
Phvul.002G296300 Phaseolus vulgaris HOM05D002129 ORTHO05D002188 8.4e-07 58.2 230 27.4
Actinidia27334 Actinidia chinensis HOM05D002129 ORTHO05D002188 1.1e-06 57.8 209 29.2
Duzib205G0555 Durio zibethinus HOM05D002129 ORTHO05D002188 1.4e-06 57.4 176 27.8
arahy.Tifrunner.gnm1.ann1.DN0YA4 Arachis hypogaea HOM05D002129 ORTHO05D002188 2.4e-06 56.6 230 27.8
arahy.Tifrunner.gnm1.ann1.Q3GPI2 Arachis hypogaea HOM05D002129 ORTHO05D002188 2.4e-06 56.6 230 27.8
SGA_v2.0_scaffold173G39089 Striga asiatica HOM05D002129 ORTHO05D002188 2.4e-06 56.6 194 25.3
PGR042G1587 Punica granatum HOM05D002129 ORTHO05D002188 3.2e-06 56.2 220 31.4
PGSC0003DMG400012303 Solanum tuberosum HOM05D002129 ORTHO05D002188 3.2e-06 56.2 225 26.7
Psat7g027680 Pisum sativum HOM05D002129 ORTHO05D002188 5.4e-06 55.5 176 25.0
Eucgr.E00844 Eucalyptus grandis HOM05D002129 ORTHO05D002188 7.1e-06 55.1 230 27.8
FvH4_5g04072 Fragaria vesca HOM05D002129 ORTHO05D002188 7.1e-06 55.1 185 24.3
FAN18G4528 Fragaria x ananassa HOM05D002129 ORTHO05D002188 7.1e-06 55.1 173 25.4


User provided reference genes

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