Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36624 Brassica carinata HOM05D001291 ORTHO05D039229 4.9e-28 127.1 64 100.0
C07p02030 Brassica napus HOM05D001291 ORTHO05D039229 1.9e-24 115.2 61 96.7
A09p58270 Brassica napus HOM05D001291 ORTHO05D001375 1.0e-09 66.2 52 71.2
BcaC07g41143 Brassica carinata HOM05D001291 ORTHO05D001375 3.0e-09 64.7 52 69.2
A02p21800 Brassica napus HOM05D029422 ORTHO05D039158 3.0e-09 64.7 39 79.5
C08p41560 Brassica napus HOM05D001291 ORTHO05D001375 3.0e-09 64.7 52 69.2
BraA09t41214Z Brassica rapa HOM05D001291 ORTHO05D001375 3.0e-09 64.7 52 69.2
CiPaw.08G062000 Carya illinoinensis HOM05D001291 ORTHO05D001375 6.6e-09 63.5 48 64.6
CARHR112310 Cardamine hirsuta HOM05D001291 ORTHO05D001375 1.5e-08 62.4 52 65.4
AT2G21410 Arabidopsis thaliana HOM05D001291 ORTHO05D001375 2.5e-08 61.6 52 67.3
BcaC01g00277 Brassica carinata HOM05D001291 ORTHO05D001375 2.5e-08 61.6 50 66.0
A08p23860 Brassica napus HOM05D001291 ORTHO05D001375 2.5e-08 61.6 50 66.0
C03p77570 Brassica napus HOM05D001291 ORTHO05D001375 2.5e-08 61.6 50 66.0
BolC3t20013H Brassica oleracea HOM05D001291 ORTHO05D001375 2.5e-08 61.6 50 66.0
BraA08t34338Z Brassica rapa HOM05D001291 ORTHO05D001375 2.5e-08 61.6 50 66.0
BolC8t51717H Brassica oleracea HOM05D001291 ORTHO05D001375 3.3e-08 61.2 50 68.0
Thhalv10000048m.g Eutrema salsugineum HOM05D001291 ORTHO05D001375 3.3e-08 61.2 52 65.4
BcaNung01282 Brassica carinata HOM05D001291 ORTHO05D001375 4.3e-08 60.8 45 64.4
A01p00200 Brassica napus HOM05D001291 ORTHO05D001375 4.3e-08 60.8 45 64.4
BraA01t00026Z Brassica rapa HOM05D001291 ORTHO05D001375 4.3e-08 60.8 45 64.4
BcaB03g14651 Brassica carinata HOM05D001291 ORTHO05D039158 5.6e-08 60.5 35 82.9
Carub.0007s0095 Capsella rubella HOM05D001291 ORTHO05D001375 5.6e-08 60.5 50 64.0
Thhalv10024425m.g Eutrema salsugineum HOM05D001291 ORTHO05D001375 5.6e-08 60.5 50 64.0
Sp7g36750 Schrenkiella parvula HOM05D001291 ORTHO05D001375 5.6e-08 60.5 50 64.0
Cfa013897 Carpinus fangiana HOM05D001291 ORTHO05D001375 7.3e-08 60.1 45 64.4
Psat5g014240 Pisum sativum HOM05D001291 ORTHO05D001375 7.3e-08 60.1 46 60.9
Atru.chr13.369 Acer truncatum HOM05D001291 ORTHO05D001375 9.5e-08 59.7 48 60.4
C01p00300 Brassica napus HOM05D001291 ORTHO05D001375 9.5e-08 59.7 45 62.2
BolC1t00036H Brassica oleracea HOM05D001291 ORTHO05D001375 9.5e-08 59.7 45 62.2
Carub.0004s0046 Capsella rubella HOM05D001291 ORTHO05D001375 9.5e-08 59.7 52 65.4
Cc10_g02210 Coffea canephora HOM05D001291 ORTHO05D001375 9.5e-08 59.7 48 60.4
Cpa.g.sc150.48 Carica papaya HOM05D001291 ORTHO05D001375 1.2e-07 59.3 50 64.0
Glyma.04G027466 Glycine max HOM05D001291 ORTHO05D001375 1.2e-07 59.3 45 62.2
Sabra04G0107300 Salix brachista HOM05D001291 ORTHO05D001375 1.2e-07 59.3 45 64.4
Atru.chr13.371 Acer truncatum HOM05D001291 ORTHO05D001375 1.6e-07 58.9 45 62.2
Aa31LG7G15080 Aethionema arabicum HOM05D001291 ORTHO05D001375 1.6e-07 58.9 52 59.6
AL7G11010 Arabidopsis lyrata HOM05D001291 ORTHO05D001375 1.6e-07 58.9 52 61.5
AT4G39080 Arabidopsis thaliana HOM05D001291 ORTHO05D001375 1.6e-07 58.9 48 60.4
Gohir.D01G101200 Gossypium hirsutum HOM05D001291 ORTHO05D001375 1.6e-07 58.9 48 56.2
Gorai.002G125700 Gossypium raimondii HOM05D001291 ORTHO05D001375 1.6e-07 58.9 48 56.2
Sed0026213 Sechium edule HOM05D001291 ORTHO05D001375 1.6e-07 58.9 45 62.2
CARHR247670 Cardamine hirsuta HOM05D001291 ORTHO05D001375 2.1e-07 58.5 50 60.0
TPR.G12504 Trifolium pratense HOM05D001291 ORTHO05D001375 2.1e-07 58.5 45 62.2
Manes.18G018300 Manihot esculenta HOM05D001291 ORTHO05D001375 2.8e-07 58.2 48 60.4
Potri.009G121400 Populus trichocarpa HOM05D001291 ORTHO05D001375 2.8e-07 58.2 49 63.3
BcaB03g12240 Brassica carinata HOM05D001291 ORTHO05D001375 3.6e-07 57.8 50 60.0
Glyma.06G027600 Glycine max HOM05D001291 ORTHO05D001375 3.6e-07 57.8 45 60.0
Hund06263 Selenicereus undatus HOM05D001291 ORTHO05D001375 3.6e-07 57.8 48 58.3
ATR0661G099 Amborella trichopoda HOM05D001291 ORTHO05D001375 4.7e-07 57.4 44 61.4
MD10G1066800 Malus domestica HOM05D001291 ORTHO05D001375 4.7e-07 57.4 45 62.2
Medtr3g112500 Medicago truncatula HOM05D001291 ORTHO05D001375 4.7e-07 57.4 44 59.1
THA.LOC104824805 Tarenaya hassleriana HOM05D001291 ORTHO05D001375 4.7e-07 57.4 56 55.4
TWI31G1042 Tripterygium wilfordii HOM05D001291 ORTHO05D001375 4.7e-07 57.4 48 60.4
Ca_02065_v3 Cicer arietinum L. HOM05D001291 ORTHO05D001375 6.2e-07 57.0 45 57.8
Ciclev10027828m.g Citrus clementina HOM05D001291 ORTHO05D001375 6.2e-07 57.0 48 58.3
Lalb_Chr11g0062111 Lupinus albus HOM05D001291 ORTHO05D001375 6.2e-07 57.0 44 61.4
Nitab4.5_0007812g0040 Nicotiana tabacum HOM05D001291 ORTHO05D001375 6.2e-07 57.0 45 62.2
Nitab4.5_0010575g0030 Nicotiana tabacum HOM05D001291 ORTHO05D001375 6.2e-07 57.0 45 62.2
CiPaw.06G131400 Carya illinoinensis HOM05D001291 ORTHO05D001375 8.1e-07 56.6 45 62.2
COL.COLO4_26007 Corchorus olitorius HOM05D001291 ORTHO05D001375 8.1e-07 56.6 50 62.0
FvH4_2g09950 Fragaria vesca HOM05D001291 ORTHO05D001375 8.1e-07 56.6 45 62.2
FvH4_2g38960 Fragaria vesca HOM05D001291 ORTHO05D001375 8.1e-07 56.6 48 56.2
FAN15G0594 Fragaria x ananassa HOM05D001291 ORTHO05D001375 8.1e-07 56.6 45 62.2
FAN24G1257 Fragaria x ananassa HOM05D001291 ORTHO05D001375 8.1e-07 56.6 45 62.2
Gohir.A01G113400 Gossypium hirsutum HOM05D001291 ORTHO05D001375 1.1e-06 56.2 48 54.2
Gohir.A13G031500 Gossypium hirsutum HOM05D001291 ORTHO05D001375 1.1e-06 56.2 50 60.0
Manes.04G085500 Manihot esculenta HOM05D001291 ORTHO05D001375 1.1e-06 56.2 45 62.2
Potri.005G234100 Populus trichocarpa HOM05D001291 ORTHO05D001375 1.1e-06 56.2 47 59.6
Sabra05G0180400 Salix brachista HOM05D001291 ORTHO05D001375 1.1e-06 56.2 47 59.6
Thecc.02G078800 Theobroma cacao HOM05D001291 ORTHO05D001375 1.1e-06 56.2 44 61.4
Cc00_g20280 Coffea canephora HOM05D001291 ORTHO05D001375 1.4e-06 55.8 44 61.4
DCAR_023032 Daucus carota HOM05D001291 ORTHO05D001375 1.4e-06 55.8 46 60.9
Lj4A31T86 Lonicera japonica HOM05D001291 ORTHO05D001375 1.4e-06 55.8 45 57.8
MD00G1085500 Malus domestica HOM05D001291 ORTHO05D001375 1.4e-06 55.8 45 60.0
Potri.002G028600 Populus trichocarpa HOM05D001291 ORTHO05D001375 1.4e-06 55.8 47 59.6
Prupe.8G088600 Prunus persica HOM05D001291 ORTHO05D001375 1.4e-06 55.8 48 56.2
CiPaw.05G071200 Carya illinoinensis HOM05D001291 ORTHO05D001375 1.8e-06 55.5 45 62.2
MD08G1021400 Malus domestica HOM05D001291 ORTHO05D001375 1.8e-06 55.5 48 56.2
Manes.11G087300 Manihot esculenta HOM05D001291 ORTHO05D001375 1.8e-06 55.5 45 60.0
THA.LOC104807757 Tarenaya hassleriana HOM05D001291 ORTHO05D001375 1.8e-06 55.5 43 60.5
TPR.G30502 Trifolium pratense HOM05D001291 ORTHO05D001375 1.8e-06 55.5 45 60.0
TAR625G0690 Trochodendron aralioides HOM05D001291 ORTHO05D001375 1.8e-06 55.5 45 57.8
vmacro17448 Vaccinium macrocarpon HOM05D001291 ORTHO05D001375 1.8e-06 55.5 57 52.6
Actinidia27866 Actinidia chinensis HOM05D001291 ORTHO05D001375 2.3e-06 55.1 59 50.8
COL.COLO4_26215 Corchorus olitorius HOM05D001291 ORTHO05D001375 2.3e-06 55.1 48 54.2
Lsat_1_v5_gn_4_116221 Lactuca sativa HOM05D001291 ORTHO05D001375 2.3e-06 55.1 50 58.0
Peaxi162Scf00016g00244 Petunia axillaris HOM05D001291 ORTHO05D001375 2.3e-06 55.1 45 62.2
QL02p010556 Quercus lobata HOM05D001291 ORTHO05D001375 2.3e-06 55.1 54 53.7
RcHm_v2.0_Chr6g0266851 Rosa chinensis HOM05D001291 ORTHO05D001375 2.3e-06 55.1 45 60.0
Sed0006800 Sechium edule HOM05D001291 ORTHO05D001375 2.3e-06 55.1 45 62.2
SEGI_17576 Sequoiadendron giganteum HOM05D001291 ORTHO05D001375 2.3e-06 55.1 48 60.4
Duzib093G0959 Durio zibethinus HOM05D001291 ORTHO05D001375 3.1e-06 54.7 48 56.2
Hma1.2p1_0773F.1_g216090 Hydrangea macrophylla HOM05D001291 ORTHO05D001375 3.1e-06 54.7 48 56.2
Nn5g29166 Nelumbo nucifera HOM05D001291 ORTHO05D001375 3.1e-06 54.7 45 60.0
PSO541G6241 Papaver somniferum HOM05D001291 ORTHO05D001375 3.1e-06 54.7 45 60.0
PSO675G4271 Papaver somniferum HOM05D001291 ORTHO05D001375 3.1e-06 54.7 45 60.0
Rhsim05G0070000 Rhododendron simsii HOM05D001291 ORTHO05D001375 3.1e-06 54.7 57 50.9
Sabra02G0022700 Salix brachista HOM05D001291 ORTHO05D001375 3.1e-06 54.7 47 57.4
Sc15g0007230 Simmondsia chinensis HOM05D001291 ORTHO05D001375 3.1e-06 54.7 45 57.8
AUR62014446 Chenopodium quinoa HOM05D001291 ORTHO05D001375 4.0e-06 54.3 56 53.6
Dinv39477 Davidia involucrata HOM05D001291 ORTHO05D024087 4.0e-06 54.3 45 57.8
ECA247G2402 Erigeron canadensis HOM05D001291 ORTHO05D001375 4.0e-06 54.3 48 56.2
FAN15G3546 Fragaria x ananassa HOM05D001291 ORTHO05D001375 4.0e-06 54.3 48 54.2
FAN20G1460 Fragaria x ananassa HOM05D001291 ORTHO05D001375 4.0e-06 54.3 48 54.2
FAN27G1984 Fragaria x ananassa HOM05D001291 ORTHO05D001375 4.0e-06 54.3 48 54.2
Lj1g0015425 Lotus japonicus HOM05D001291 ORTHO05D001375 4.0e-06 54.3 45 55.6
Phvul.002G179900 Phaseolus vulgaris HOM05D001291 ORTHO05D001375 4.0e-06 54.3 45 57.8
Psat7g182880 Pisum sativum HOM05D001291 ORTHO05D001375 4.0e-06 54.3 45 57.8
Prupe.1G371400 Prunus persica HOM05D001291 ORTHO05D001375 4.0e-06 54.3 48 56.2
VMungo0251G0899 Vigna mungo HOM05D001291 ORTHO05D001375 4.0e-06 54.3 45 57.8
arahy.Tifrunner.gnm1.ann1.QVPQ45 Arachis hypogaea HOM05D001291 ORTHO05D001375 5.2e-06 53.9 45 57.8
arahy.Tifrunner.gnm1.ann1.RA2IS4 Arachis hypogaea HOM05D001291 ORTHO05D001375 5.2e-06 53.9 45 57.8
MSTRG.27682 Avicennia marina HOM05D001291 ORTHO05D001375 5.2e-06 53.9 45 57.8
CSS0035642 Camellia sinensis var. sinensis HOM05D001291 ORTHO05D001375 5.2e-06 53.9 45 57.8
CSS0042069 Camellia sinensis var. sinensis HOM05D001291 ORTHO05D001375 5.2e-06 53.9 45 57.8
ECA232G1696 Erigeron canadensis HOM05D001291 ORTHO05D001375 5.2e-06 53.9 44 54.5
Gohir.D13G029500 Gossypium hirsutum HOM05D001291 ORTHO05D001375 5.2e-06 53.9 50 58.0
Gorai.013G033700 Gossypium raimondii HOM05D001291 ORTHO05D001375 5.2e-06 53.9 50 58.0
Lsat_1_v5_gn_7_91881 Lactuca sativa HOM05D001291 ORTHO05D001375 5.2e-06 53.9 45 55.6
MBI03_g20465_MAGBIO Magnolia biondii HOM05D001291 ORTHO05D001375 5.2e-06 53.9 45 57.8
EL10Ac1g00567 Beta vulgaris HOM05D001291 ORTHO05D001375 6.8e-06 53.5 48 56.2
Migut.B00197 Erythranthe guttata HOM05D001291 ORTHO05D001375 6.8e-06 53.5 45 60.0
FAN27G1549 Fragaria x ananassa HOM05D001291 ORTHO05D001375 6.8e-06 53.5 45 57.8
HanXRQChr16g0505131 Helianthus annuus HOM05D001291 ORTHO05D001375 6.8e-06 53.5 45 55.6
Lj5A192G71 Lonicera japonica HOM05D001291 ORTHO05D001375 6.8e-06 53.5 48 54.2
Medtr4g071070 Medicago truncatula HOM05D001291 ORTHO05D001375 6.8e-06 53.5 45 57.8
PGR083G1449 Punica granatum HOM05D001291 ORTHO05D001375 6.8e-06 53.5 54 53.7
QL11p045527 Quercus lobata HOM05D001291 ORTHO05D001375 6.8e-06 53.5 48 56.2
TWI56G0013 Tripterygium wilfordii HOM05D001291 ORTHO05D001375 6.8e-06 53.5 48 54.2
Zm00001eb398530 Zea mays HOM05D001291 ORTHO05D001375 6.8e-06 53.5 48 54.2
Actinidia08372 Actinidia chinensis HOM05D001291 ORTHO05D001375 8.9e-06 53.1 58 50.0
Aqoxy5G01514 Aquilegia oxysepala HOM05D001291 ORTHO05D001375 8.9e-06 53.1 45 57.8
Dinv42020 Davidia involucrata HOM05D001291 ORTHO05D001375 8.9e-06 53.1 45 57.8
Os03g0251500 Oryza sativa ssp. japonica HOM05D001291 ORTHO05D001375 8.9e-06 53.1 48 52.1
PGSC0003DMG400027954 Solanum tuberosum HOM05D001291 ORTHO05D001375 8.9e-06 53.1 45 53.3
Zm00001eb010790 Zea mays HOM05D001291 ORTHO05D001375 8.9e-06 53.1 48 52.1


User provided reference genes

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