Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36570 Brassica carinata HOM05D000499 ORTHO05D011058 2.6e-43 178.3 89 100.0
A10p08040 Brassica napus HOM05D005048 ORTHO05D006420 2.0e-24 115.5 82 75.6
A03p16470 Brassica napus HOM05D000499 ORTHO05D007471 5.9e-24 114.0 82 73.2
BraA03t10936Z Brassica rapa HOM05D000499 ORTHO05D007471 5.9e-24 114.0 82 73.2
BraSC35t45995Z Brassica rapa HOM05D005048 ORTHO05D006420 5.9e-24 114.0 82 74.4
C09p39260 Brassica napus HOM05D000499 ORTHO05D007471 1.0e-23 113.2 82 74.4
BolC9t56805H Brassica oleracea HOM05D000499 ORTHO05D007471 1.0e-23 113.2 82 74.4
BolC7t40678H Brassica oleracea HOM05D000499 ORTHO05D011058 1.3e-23 112.8 56 100.0
BcaC01g06051 Brassica carinata HOM05D000499 ORTHO05D007471 5.0e-23 110.9 81 72.8
C03p19360 Brassica napus HOM05D000499 ORTHO05D007471 5.0e-23 110.9 81 72.8
BolC3t14322H Brassica oleracea HOM05D000499 ORTHO05D007471 5.0e-23 110.9 81 72.8
Thhalv10013482m.g Eutrema salsugineum HOM05D000499 ORTHO05D007471 2.1e-21 105.5 85 68.2
Sp6g13080 Schrenkiella parvula HOM05D000499 ORTHO05D007471 1.0e-20 103.2 84 66.7
AT5G42660 Arabidopsis thaliana HOM05D000499 ORTHO05D007471 1.8e-20 102.4 84 66.7
A09p42850 Brassica napus HOM05D000499 ORTHO05D011058 4.0e-20 101.3 81 65.4
AL8G18540 Arabidopsis lyrata HOM05D000499 ORTHO05D007471 1.2e-19 99.8 84 64.3
Carub.0008s0636 Capsella rubella HOM05D000499 ORTHO05D007471 3.4e-19 98.2 84 63.1
A03p66010 Brassica napus HOM05D000499 ORTHO05D011058 1.7e-18 95.9 56 83.9
BraA03t15657Z Brassica rapa HOM05D000499 ORTHO05D011058 1.7e-18 95.9 56 83.9
Aa31LG9G12730 Aethionema arabicum HOM05D000499 ORTHO05D007471 4.1e-17 91.3 85 60.0
Dinv36028 Davidia involucrata HOM05D000499 ORTHO05D007471 4.2e-14 81.3 90 50.0
THA.LOC104803394 Tarenaya hassleriana HOM05D000499 ORTHO05D007471 2.1e-13 79.0 76 57.9
FAN10G3758 Fragaria x ananassa HOM05D000499 ORTHO05D007471 4.7e-13 77.8 73 58.9
vmacro21599 Vaccinium macrocarpon HOM05D000499 ORTHO05D007471 6.1e-13 77.4 89 48.3
Duzib147G0278 Durio zibethinus HOM05D000499 ORTHO05D007471 1.8e-12 75.9 73 60.3
Atru.chr13.570 Acer truncatum HOM05D000499 ORTHO05D007471 2.3e-12 75.5 76 55.3
CANSAT56G4116 Cannabis sativa HOM05D000499 ORTHO05D007471 2.3e-12 75.5 89 48.3
Dinv39368 Davidia involucrata HOM05D000499 ORTHO05D007471 3.0e-12 75.1 79 49.4
FAN01G0570 Fragaria x ananassa HOM05D000499 ORTHO05D007471 4.0e-12 74.7 75 54.7
FAN03G3351 Fragaria x ananassa HOM05D000499 ORTHO05D007471 4.0e-12 74.7 75 54.7
HanXRQChr09g0268401 Helianthus annuus HOM05D000499 ORTHO05D007471 4.0e-12 74.7 84 48.8
Cfa018454 Carpinus fangiana HOM05D000499 ORTHO05D007471 5.2e-12 74.3 89 49.4
Lsat_1_v5_gn_4_123041 Lactuca sativa HOM05D000499 ORTHO05D007471 5.2e-12 74.3 84 48.8
Oeu015605.2 Olea europaea HOM05D000499 ORTHO05D007471 5.2e-12 74.3 76 52.6
CiPaw.15G071000 Carya illinoinensis HOM05D000499 ORTHO05D007471 6.8e-12 73.9 89 47.2
FvH4_7g01740 Fragaria vesca HOM05D000499 ORTHO05D007471 6.8e-12 73.9 76 53.9
PGR083G1137 Punica granatum HOM05D000499 ORTHO05D007471 6.8e-12 73.9 76 52.6
Haze_17612 Corylus avellana HOM05D000499 ORTHO05D007471 8.9e-12 73.6 87 49.4
Gohir.A06G012900 Gossypium hirsutum HOM05D000499 ORTHO05D007471 1.2e-11 73.2 90 51.1
Thecc.08G020400 Theobroma cacao HOM05D000499 ORTHO05D007471 1.2e-11 73.2 90 52.2
Cpa.g.sc64.37 Carica papaya HOM05D000499 ORTHO05D007471 1.5e-11 72.8 88 48.9
FAN06G3702 Fragaria x ananassa HOM05D000499 ORTHO05D007471 1.5e-11 72.8 76 52.6
Lalb_Chr22g0355361 Lupinus albus HOM05D000499 ORTHO05D007471 1.5e-11 72.8 76 52.6
DCAR_019495 Daucus carota HOM05D003114 ORTHO05D003519 2.6e-11 72.0 78 50.0
Duzib187G1353 Durio zibethinus HOM05D000499 ORTHO05D007471 2.6e-11 72.0 90 51.1
Actinidia22576 Actinidia chinensis HOM05D000499 ORTHO05D011058 3.4e-11 71.6 77 50.6
Lj4A47T76 Lonicera japonica HOM05D000499 ORTHO05D007471 3.4e-11 71.6 85 47.1
TAR376G0340 Trochodendron aralioides HOM05D000499 ORTHO05D007471 3.4e-11 71.6 86 46.5
Ciclev10003605m.g Citrus clementina HOM05D000499 ORTHO05D007471 4.4e-11 71.2 77 54.5
COL.COLO4_26389 Corchorus olitorius HOM05D000499 ORTHO05D007471 4.4e-11 71.2 91 49.5
Actinidia15289 Actinidia chinensis HOM05D000499 ORTHO05D007471 5.7e-11 70.9 90 45.6
Gohir.D06G010400 Gossypium hirsutum HOM05D000499 ORTHO05D007471 5.7e-11 70.9 90 50.0
Gorai.010G013300 Gossypium raimondii HOM05D000499 ORTHO05D007471 5.7e-11 70.9 90 50.0
Medtr1g021670 Medicago truncatula HOM05D000499 ORTHO05D007471 9.8e-11 70.1 75 49.3
TPR.G15769 Trifolium pratense HOM05D000499 ORTHO05D007471 9.8e-11 70.1 75 50.7
Aqoxy2G03993 Aquilegia oxysepala HOM05D000499 ORTHO05D007471 1.3e-10 69.7 68 58.8
SGA_v2.0_scaffold14G07051 Striga asiatica HOM05D000499 ORTHO05D007471 1.3e-10 69.7 88 46.6
ECA232G3898 Erigeron canadensis HOM05D000499 ORTHO05D007471 2.8e-10 68.6 84 45.2
Lj5g0012472 Lotus japonicus HOM05D000499 ORTHO05D007471 2.8e-10 68.6 75 49.3
arahy.Tifrunner.gnm1.ann1.LS1NQA Arachis hypogaea HOM05D000499 ORTHO05D007471 3.7e-10 68.2 75 46.7
arahy.Tifrunner.gnm1.ann1.UQWD9J Arachis hypogaea HOM05D000499 ORTHO05D007471 3.7e-10 68.2 75 46.7
Psat6g010720 Pisum sativum HOM05D000499 ORTHO05D007471 3.7e-10 68.2 75 48.0
RcHm_v2.0_Chr1g0318301 Rosa chinensis HOM05D000499 ORTHO05D007471 3.7e-10 68.2 76 48.7
Sabra02G0118600 Salix brachista HOM05D000499 ORTHO05D007471 3.7e-10 68.2 76 51.3
Eucgr.F04207 Eucalyptus grandis HOM05D000499 ORTHO05D007471 6.3e-10 67.4 82 48.8
Oeu004672.1 Olea europaea HOM05D000499 ORTHO05D007471 6.3e-10 67.4 77 51.9
PSO675G5635 Papaver somniferum HOM05D000499 ORTHO05D007471 6.3e-10 67.4 86 44.2
Glyma.14G078200 Glycine max HOM05D000499 ORTHO05D007471 8.3e-10 67.0 76 51.3
HanXRQChr16g0507941 Helianthus annuus HOM05D000499 ORTHO05D007471 8.3e-10 67.0 70 50.0
PSO541G2319 Papaver somniferum HOM05D000499 ORTHO05D007471 8.3e-10 67.0 86 44.2
Migut.N02677 Erythranthe guttata HOM05D000499 ORTHO05D007471 1.1e-09 66.6 88 45.5
Nitab4.5_0009288g0030 Nicotiana tabacum HOM05D000499 ORTHO05D007471 1.1e-09 66.6 75 49.3
Ca_13326_v3 Cicer arietinum L. HOM05D000499 ORTHO05D007471 1.4e-09 66.2 75 48.0
Hma1.2p1_0584F.1_g183470 Hydrangea macrophylla HOM05D000499 ORTHO05D007471 1.4e-09 66.2 74 50.0
Peaxi162Scf00280g00811 Petunia axillaris HOM05D000499 ORTHO05D007471 1.4e-09 66.2 75 50.7
GSVIVG01009625001 Vitis vinifera HOM05D000499 ORTHO05D007471 1.4e-09 66.2 90 43.3
Cfa004969 Carpinus fangiana HOM05D000499 ORTHO05D007471 1.8e-09 65.9 82 46.3
arahy.Tifrunner.gnm1.ann1.527VTZ Arachis hypogaea HOM05D000499 ORTHO05D007471 2.4e-09 65.5 68 48.5
arahy.Tifrunner.gnm1.ann1.HC27T5 Arachis hypogaea HOM05D000499 ORTHO05D007471 2.4e-09 65.5 68 48.5
Glyma.17G247200 Glycine max HOM05D000499 ORTHO05D007471 2.4e-09 65.5 75 50.7
Prupe.2G023300 Prunus persica HOM05D000499 ORTHO05D007471 2.4e-09 65.5 89 40.4
Cc10_g03530 Coffea canephora HOM05D000499 ORTHO05D007471 3.1e-09 65.1 90 44.4
Phvul.001G017600 Phaseolus vulgaris HOM05D000499 ORTHO05D007471 4.1e-09 64.7 89 44.9
Potri.002G149900 Populus trichocarpa HOM05D000499 ORTHO05D007471 4.1e-09 64.7 77 49.4
QL02p007186 Quercus lobata HOM05D000499 ORTHO05D007471 4.1e-09 64.7 76 50.0
TWI12G0811 Tripterygium wilfordii HOM05D000499 ORTHO05D007471 4.1e-09 64.7 88 40.9
VMungo0647G0317 Vigna mungo HOM05D000499 ORTHO05D007471 4.1e-09 64.7 76 48.7
MD02G1301200 Malus domestica HOM05D000499 ORTHO05D007471 5.4e-09 64.3 89 43.8
TAR381G1236 Trochodendron aralioides HOM05D000499 ORTHO05D007471 5.4e-09 64.3 90 42.2
Haze_02428 Corylus avellana HOM05D000499 ORTHO05D007471 7.0e-09 63.9 82 45.1
Nn5g29461 Nelumbo nucifera HOM05D000499 ORTHO05D007471 7.0e-09 63.9 78 48.7
Peaxi162Scf01064g00263 Petunia axillaris HOM05D000499 ORTHO05D007471 9.2e-09 63.5 75 49.3
PGSC0003DMG400016885 Solanum tuberosum HOM05D000499 ORTHO05D007471 9.2e-09 63.5 74 47.3
MSTRG.28296 Avicennia marina HOM05D000499 ORTHO05D007471 1.6e-08 62.8 87 44.8
MD07G1022800 Malus domestica HOM05D000499 ORTHO05D007471 2.0e-08 62.4 89 40.4
Manes.05G164700 Manihot esculenta HOM05D000499 ORTHO05D007471 2.0e-08 62.4 87 42.5
Nitab4.5_0000110g0060 Nicotiana tabacum HOM05D000499 ORTHO05D007471 2.0e-08 62.4 74 48.6
Sopen04g033350 Solanum pennellii HOM05D000499 ORTHO05D007471 2.0e-08 62.4 74 47.3
arahy.Tifrunner.gnm1.ann1.WE07RT Arachis hypogaea HOM05D000499 ORTHO05D011058 3.5e-08 61.6 68 45.6
MSTRG.22285 Avicennia marina HOM05D000499 ORTHO05D007471 3.5e-08 61.6 88 42.0
BcaB02g10575 Brassica carinata HOM05D000499 ORTHO05D011058 3.5e-08 61.6 53 66.0
BcaC01g02034 Brassica carinata HOM05D000499 ORTHO05D011058 3.5e-08 61.6 87 49.4
CAN.G371.117 Capsicum annuum HOM05D000499 ORTHO05D007471 3.5e-08 61.6 74 45.9
DCAR_020952 Daucus carota HOM05D000499 ORTHO05D007471 3.5e-08 61.6 71 45.1
Solyc04g079770.3 Solanum lycopersicum HOM05D000499 ORTHO05D007471 3.5e-08 61.6 74 47.3
CiPaw.05G060300 Carya illinoinensis HOM05D000499 ORTHO05D007471 4.5e-08 61.2 77 44.2
MBI16_g13161_MAGBIO Magnolia biondii HOM05D000499 ORTHO05D007471 4.5e-08 61.2 88 38.6
BcaB08g36611 Brassica carinata HOM05D000499 ORTHO05D011058 5.9e-08 60.8 65 55.4
RcHm_v2.0_Chr4g0418501 Rosa chinensis HOM05D000499 ORTHO05D007471 5.9e-08 60.8 75 45.3
TWI36G1262 Tripterygium wilfordii HOM05D000499 ORTHO05D007471 5.9e-08 60.8 87 40.2
Nn1g03995 Nelumbo nucifera HOM05D000499 ORTHO05D007471 1.0e-07 60.1 71 47.9
SalBow8G5466 Salvia bowleyana HOM05D000499 ORTHO05D007471 1.3e-07 59.7 88 43.2
SHI18077 Sapria himalayana HOM05D000499 ORTHO05D007471 1.3e-07 59.7 88 39.8
BcaNung00234 Brassica carinata HOM05D000499 ORTHO05D011058 2.3e-07 58.9 53 64.2
Sed0006245 Sechium edule HOM05D000499 ORTHO05D007471 2.9e-07 58.5 76 47.4
CDE01G0176 Ceratophyllum demersum HOM05D000499 ORTHO05D007471 5.0e-07 57.8 76 44.7
ClCG05G019250 Citrullus lanatus HOM05D000499 ORTHO05D007471 5.0e-07 57.8 74 48.6
Hund12053 Selenicereus undatus HOM05D000499 ORTHO05D007471 5.0e-07 57.8 77 48.1
CsaV3_3G044830 Cucumis sativus L. HOM05D000499 ORTHO05D007471 6.6e-07 57.4 74 44.6
Os03g0769050 Oryza sativa ssp. japonica HOM05D000499 ORTHO05D007471 8.6e-07 57.0 73 46.6
Sc02g0006640 Simmondsia chinensis HOM05D000499 ORTHO05D007471 3.3e-06 55.1 75 42.7
Duzib132G0069 Durio zibethinus HOM05D000499 ORTHO05D007471 4.3e-06 54.7 82 39.0
Dinv23563 Davidia involucrata HOM05D000370 ORTHO05D001335 7.3e-06 53.9 75 44.0
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 9.5e-06 53.5 74 47.3


User provided reference genes

Program Settings