Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36492 Brassica carinata HOM05D013384 ORTHO05D021737 3.1e-84 315.1 160 100.0
BcaC06g36498 Brassica carinata HOM05D013384 ORTHO05D021737 3.1e-84 315.1 160 100.0
C07p03650 Brassica napus HOM05D013384 ORTHO05D021737 6.8e-71 270.8 161 90.1
C07p03600 Brassica napus HOM05D013384 ORTHO05D021737 2.6e-70 268.9 161 89.4
BolC7t40756H Brassica oleracea HOM05D013384 ORTHO05D021737 7.5e-70 267.3 161 89.4
BolC7t40762H Brassica oleracea HOM05D013384 ORTHO05D021737 7.5e-70 267.3 161 89.4
C08p00010 Brassica napus HOM05D013384 ORTHO05D096770 3.0e-66 255.4 155 88.4
BcaC07g37012 Brassica carinata HOM05D013384 ORTHO05D094787 3.2e-60 235.3 126 92.9
BcaB07g33604 Brassica carinata HOM05D001371 ORTHO05D001319 3.1e-15 85.9 54 79.6
BolC8t46802H Brassica oleracea HOM05D013384 ORTHO05D105746 1.1e-12 77.4 38 100.0
BcaC08g43318 Brassica carinata HOM05D000857 ORTHO05D001319 1.6e-11 73.6 91 50.5
BolC6t35779H Brassica oleracea HOM05D000857 ORTHO05D001319 1.6e-11 73.6 91 50.5
BolC8t46881H Brassica oleracea HOM05D002364 ORTHO05D002540 2.1e-11 73.2 36 100.0
BraA08t35616Z Brassica rapa HOM05D002364 ORTHO05D002540 7.9e-11 71.2 36 97.2
Sp1g02750 Schrenkiella parvula HOM05D002364 ORTHO05D002540 3.0e-10 69.3 36 94.4
BcaB07g33597 Brassica carinata HOM05D001371 ORTHO05D001319 3.9e-10 68.9 48 72.9
AL1G13480 Arabidopsis lyrata HOM05D002364 ORTHO05D002540 2.5e-09 66.2 36 91.7
CARHR003220 Cardamine hirsuta HOM05D002364 ORTHO05D002540 2.5e-09 66.2 36 91.7
BcaNung06056 Brassica carinata HOM05D000357 ORTHO05D000242 4.3e-09 65.5 37 94.6
AT1G03900 Arabidopsis thaliana HOM05D002364 ORTHO05D002540 7.4e-09 64.7 36 88.9
THA.LOC104826045 Tarenaya hassleriana HOM05D002364 ORTHO05D002540 7.4e-09 64.7 79 49.4
Carub.0001s0304 Capsella rubella HOM05D002364 ORTHO05D002540 9.7e-09 64.3 36 88.9
Sp1g38170 Schrenkiella parvula HOM05D001371 ORTHO05D001319 8.2e-08 61.2 58 58.6
Thhalv10012263m.g Eutrema salsugineum HOM05D000357 ORTHO05D000242 2.4e-07 59.7 43 81.4
Thhalv10012017m.g Eutrema salsugineum HOM05D001371 ORTHO05D001319 3.1e-07 59.3 58 58.6
BcaB07g33572 Brassica carinata HOM05D000357 ORTHO05D000242 1.2e-06 57.4 44 72.7
BcaB07g33575 Brassica carinata HOM05D000357 ORTHO05D000242 1.2e-06 57.4 44 72.7
BcaB07g33568 Brassica carinata HOM05D000357 ORTHO05D000242 5.9e-06 55.1 44 70.5
BcaC07g37006 Brassica carinata HOM05D000357 ORTHO05D000242 5.9e-06 55.1 36 83.3
BcaC07g37011 Brassica carinata HOM05D000357 ORTHO05D000242 5.9e-06 55.1 36 83.3
C08p00020 Brassica napus HOM05D013384 ORTHO05D000242 5.9e-06 55.1 36 83.3
BolC8t46803H Brassica oleracea HOM05D013384 ORTHO05D000242 5.9e-06 55.1 36 83.3
CARHR041240 Cardamine hirsuta HOM05D000357 ORTHO05D000242 1.0e-05 54.3 43 69.8


User provided reference genes

Program Settings