Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 0.0e+00 1613.2 801 100.0
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 0.0e+00 1606.3 801 99.6
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 0.0e+00 1604.3 801 99.5
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 0.0e+00 1548.1 801 95.8
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 0.0e+00 1544.3 809 94.9
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 0.0e+00 1493.8 805 91.8
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 0.0e+00 1481.8 805 91.2
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 0.0e+00 1469.5 806 89.3
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 0.0e+00 1453.0 807 88.2
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 0.0e+00 1452.2 806 88.7
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 0.0e+00 1445.6 810 87.8
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 0.0e+00 1444.1 802 90.8
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 0.0e+00 1279.2 810 78.5
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 0.0e+00 1185.2 817 71.6
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 8.7e-300 1033.5 819 62.4
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 1.1e-297 1026.5 819 63.2
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 4.0e-297 1024.6 822 62.4
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 5.3e-297 1024.2 822 62.8
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 2.6e-296 1021.9 822 62.2
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 2.2e-295 1018.8 822 61.9
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 9.6e-291 1003.4 823 61.7
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 9.6e-291 1003.4 820 62.3
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 1.1e-289 1000.0 817 61.1
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 5.3e-289 997.7 823 61.1
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 4.9e-287 991.1 824 61.0
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 8.7e-284 980.3 819 60.6
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.5e-283 979.5 819 60.6
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 3.7e-282 974.9 821 58.8
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 9.0e-281 970.3 817 60.0
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 1.2e-280 969.9 820 59.1
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 1.7e-279 966.1 882 56.3
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 2.9e-279 965.3 818 59.5
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 7.1e-278 960.7 817 59.1
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 3.5e-277 958.4 818 58.3
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 5.1e-276 954.5 787 61.4
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 1.5e-275 953.0 813 57.7
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 2.5e-275 952.2 819 59.2
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 2.8e-274 948.7 816 58.8
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 2.8e-274 948.7 816 59.6
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 6.3e-274 947.6 815 58.5
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 8.2e-274 947.2 819 58.5
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 1.2e-272 943.3 820 58.0
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 2.6e-272 942.2 822 57.9
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 3.4e-272 941.8 820 57.9
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 2.9e-271 938.7 819 59.1
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 1.2e-269 933.3 818 58.4
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 1.8e-268 929.5 817 58.3
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 1.5e-267 926.4 823 55.9
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 2.2e-266 922.5 819 57.6
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.8e-266 922.2 819 57.1
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 4.1e-265 918.3 820 57.1
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 2.6e-264 915.6 847 57.1
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 7.7e-264 914.1 818 57.1
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 5.0e-263 911.4 821 56.6
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 1.1e-262 910.2 814 56.6
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.5e-262 909.1 821 56.9
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 3.2e-262 908.7 810 55.6
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 4.2e-262 908.3 816 55.4
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 4.2e-262 908.3 820 55.9
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 5.5e-262 907.9 825 57.3
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.7e-261 905.6 820 56.6
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 4.6e-261 904.8 819 56.4
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 4.3e-259 898.3 814 56.4
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 2.2e-258 896.0 816 56.9
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 2.8e-258 895.6 856 54.3
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 1.8e-257 892.9 822 56.8
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 2.4e-257 892.5 822 56.0
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 3.1e-257 892.1 804 56.0
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 3.1e-257 892.1 815 55.8
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 2.6e-256 889.0 814 55.2
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 3.4e-256 888.6 822 56.0
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 1.0e-255 887.1 814 55.8
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 1.7e-255 886.3 817 54.8
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 1.9e-254 882.9 818 56.5
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 5.5e-254 881.3 822 54.9
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 7.2e-254 880.9 883 52.9
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 9.4e-254 880.6 819 54.8
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 9.4e-254 880.6 814 55.0
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 3.6e-253 878.6 811 54.9
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 6.7e-252 874.4 835 55.8
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 8.8e-252 874.0 819 56.5
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 2.0e-251 872.8 819 55.4
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 3.3e-251 872.1 815 55.3
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 2.2e-250 869.4 819 56.3
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 3.2e-246 855.5 829 53.9
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 5.2e-244 848.2 840 56.2
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 2.0e-243 846.3 806 56.1
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 1.6e-240 836.6 806 56.3
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 4.2e-238 828.6 809 60.7
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 5.7e-235 818.1 814 52.5
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 1.1e-233 813.9 813 52.3
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 2.8e-226 789.3 826 51.3
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 1.1e-222 777.3 809 49.8
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 1.9e-222 776.5 812 51.0
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 4.3e-222 775.4 817 49.9
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 7.3e-222 774.6 588 65.6
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 1.8e-220 770.0 808 53.5
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 3.0e-220 769.2 811 48.3
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 3.4e-219 765.8 830 49.9
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 1.4e-217 760.4 627 58.9
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 1.5e-211 740.3 817 49.0
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 2.5e-206 723.0 733 53.2
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 1.6e-200 703.7 804 51.1
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 3.0e-199 699.5 887 45.7
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 5.6e-198 695.3 562 61.4
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 5.6e-198 695.3 666 55.9
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 3.6e-189 666.0 823 44.5
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 3.9e-183 646.0 807 48.8
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 1.7e-170 604.0 825 41.7
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 3.8e-162 576.2 464 62.7
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 1.9e-150 537.3 845 36.9
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 2.8e-141 506.9 849 36.9
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 4.7e-136 489.6 830 37.3
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 2.3e-135 487.3 581 45.8
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 7.0e-132 475.7 339 67.8
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 2.9e-130 470.3 479 51.4
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 1.7e-125 454.5 837 34.9
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.3e-109 401.7 406 54.9
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 5.4e-108 396.4 271 78.2
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 7.8e-107 392.5 270 77.8
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 8.6e-106 389.0 270 77.8
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 4.0e-95 353.6 682 32.6
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 1.1e-89 335.5 420 45.5
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 2.1e-67 261.5 742 29.8
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 8.1e-56 223.0 151 68.2
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 1.2e-51 209.1 844 24.8
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.9e-44 185.3 158 60.8
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 2.1e-43 181.8 197 45.7
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 1.0e-42 179.5 462 30.7
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 9.7e-41 172.9 195 47.7
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 9.0e-39 166.4 106 81.1
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 1.3e-37 162.5 106 79.2
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 1.3e-32 146.0 104 64.4
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 9.7e-25 119.8 135 45.9
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 2.0e-22 112.1 139 41.0
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 1.0e-21 109.8 63 88.9
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 1.1e-20 106.3 94 55.3
CARHR240490 Cardamine hirsuta HOM05D004893 ORTHO05D006320 2.4e-15 88.6 79 57.0
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 3.2e-12 78.2 94 41.5
BcaC06g36526 Brassica carinata HOM05D004893 ORTHO05D032397 9.4e-12 76.6 96 52.1
BcaC09g48066 Brassica carinata HOM05D014782 ORTHO05D031875 1.2e-11 76.3 117 47.0
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 1.4e-10 72.8 49 67.3
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 1.8e-10 72.4 49 67.3
C07p03290 Brassica napus HOM05D004893 ORTHO05D032397 8.8e-10 70.1 40 87.5
BolC7t40730H Brassica oleracea HOM05D004893 ORTHO05D032397 8.8e-10 70.1 40 87.5
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 3.3e-09 68.2 62 50.0
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 2.8e-08 65.1 94 41.5
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.4e-07 62.8 71 40.8
Actinidia31528 Actinidia chinensis HOM05D004893 ORTHO05D006320 2.7e-06 58.5 40 67.5


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