Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36322 Brassica carinata HOM05D004095 ORTHO05D003197 5.7e-167 590.9 309 100.0
A07p03170 Brassica napus HOM05D004095 ORTHO05D003197 8.6e-155 550.4 309 92.9
C07p05400 Brassica napus HOM05D004095 ORTHO05D003197 7.5e-151 537.3 338 84.6
BolC7t40940H Brassica oleracea HOM05D004095 ORTHO05D003197 4.9e-150 534.6 338 84.3
BraA07t28113Z Brassica rapa HOM05D004095 ORTHO05D003197 1.9e-149 532.7 309 89.6
Thhalv10022767m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 5.5e-69 265.4 362 53.0
AT2G17787 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 4.7e-68 262.3 347 53.0
BcaB07g31703 Brassica carinata HOM05D004095 ORTHO05D003197 1.0e-62 244.6 335 52.8
Carub.0003s3193 Capsella rubella HOM05D004095 ORTHO05D003197 4.2e-61 239.2 350 49.4
AL3G50810 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 3.6e-60 236.1 348 49.7
BraA09t36805Z Brassica rapa HOM05D004095 ORTHO05D003197 1.4e-59 234.2 349 46.4
A09p11580 Brassica napus HOM05D004095 ORTHO05D003197 2.6e-58 229.9 322 48.4
BcaC04g22942 Brassica carinata HOM05D004095 ORTHO05D003197 3.7e-57 226.1 324 51.2
CARHR108180 Cardamine hirsuta HOM05D004095 ORTHO05D003197 8.3e-57 224.9 313 49.5
C09p13630 Brassica napus HOM05D004095 ORTHO05D003197 2.9e-54 216.5 324 48.1
THA.LOC104807504 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 5.7e-42 175.6 341 40.8
THA.LOC104804274 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 1.6e-39 167.5 349 39.5
CARHR244340 Cardamine hirsuta HOM05D004095 ORTHO05D003197 2.8e-36 156.8 341 38.7
A03p63990 Brassica napus HOM05D004095 ORTHO05D003197 7.5e-34 148.7 369 33.1
BraA03t15466Z Brassica rapa HOM05D004095 ORTHO05D003197 3.2e-32 143.3 375 33.3
BolC1t00292H Brassica oleracea HOM05D004095 ORTHO05D003197 9.2e-32 141.7 328 40.2
C01p03060 Brassica napus HOM05D004095 ORTHO05D003197 4.6e-31 139.4 337 37.1
Aa31LG6G12890 Aethionema arabicum HOM05D004095 ORTHO05D003197 6.0e-31 139.0 364 37.9
AL7G15100 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 3.3e-29 133.3 358 34.9
BcaNung05051 Brassica carinata HOM05D004095 ORTHO05D003197 4.3e-29 132.9 361 33.5
BcaNung00778 Brassica carinata HOM05D004095 ORTHO05D003197 2.8e-28 130.2 339 36.9
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.2e-25 120.6 337 35.3
Carub.0007s0428 Capsella rubella HOM05D004095 ORTHO05D003197 4.9e-25 119.4 356 35.1
C07p61450 Brassica napus HOM05D004095 ORTHO05D003197 8.3e-25 118.6 361 34.3
A01p02760 Brassica napus HOM05D004095 ORTHO05D003197 1.4e-24 117.9 329 35.3
Thhalv10027062m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 1.4e-24 117.9 295 36.3
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 2.4e-24 117.1 330 32.1
BraA01t00262Z Brassica rapa HOM05D004095 ORTHO05D003197 3.2e-24 116.7 345 34.2
AT4G35940 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 4.1e-24 116.3 384 32.0
Sp7g33720 Schrenkiella parvula HOM05D004095 ORTHO05D003197 4.1e-24 116.3 371 32.9
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 5.4e-24 115.9 335 34.0
BolC7t46570H Brassica oleracea HOM05D004095 ORTHO05D003197 4.6e-23 112.8 373 32.4
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 1.1e-21 108.2 344 35.2
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.1e-21 108.2 339 35.1
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 1.2e-20 104.8 336 33.0
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 1.6e-20 104.4 337 33.8
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 2.9e-17 93.6 347 31.7
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 5.4e-16 89.4 336 30.1
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 1.3e-14 84.7 326 29.4
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.3e-14 84.7 338 30.5
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 2.3e-14 84.0 338 30.5
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 3.9e-14 83.2 328 29.3
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 8.6e-14 82.0 376 28.2
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 1.5e-13 81.3 323 28.8
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 1.9e-13 80.9 328 30.8
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 1.9e-13 80.9 330 30.6
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 3.3e-13 80.1 342 30.7
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 9.6e-13 78.6 343 30.9
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 1.6e-12 77.8 330 29.4
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 1.6e-12 77.8 322 30.1
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 4.7e-12 76.3 340 26.5
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 8.1e-12 75.5 327 28.7
Gorai.008G208400 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.1e-11 75.1 131 38.2
Gohir.D12G193466 Gossypium hirsutum HOM05D004095 ORTHO05D003197 6.9e-11 72.4 131 37.4
Ciclev10025767m.g Citrus clementina HOM05D004095 ORTHO05D003197 2.6e-10 70.5 95 40.0
Hund01666 Selenicereus undatus HOM05D004095 ORTHO05D003197 2.6e-10 70.5 366 25.1
Gorai.008G131100 Gossypium raimondii HOM05D004095 ORTHO05D003197 9.9e-10 68.6 231 31.2
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 2.2e-09 67.4 338 24.9
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 4.9e-09 66.2 326 29.4
MSTRG.22345 Avicennia marina HOM05D004095 ORTHO05D003197 8.4e-09 65.5 326 27.9
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 1.4e-08 64.7 330 25.2
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 1.4e-08 64.7 335 28.4
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 3.2e-08 63.5 327 27.2
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 4.2e-08 63.2 321 26.5
BolC9t54253H Brassica oleracea HOM05D004095 ORTHO05D003197 5.4e-08 62.8 41 73.2
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 5.4e-08 62.8 329 28.0
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 9.3e-08 62.0 98 38.8
PGSC0003DMG400029333 Solanum tuberosum HOM05D004095 ORTHO05D003197 9.3e-08 62.0 321 28.7
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 1.2e-07 61.6 327 30.6
Haze_03728 Corylus avellana HOM05D004095 ORTHO05D003197 1.6e-07 61.2 432 25.7
Potri.005G242400 Populus trichocarpa HOM05D004095 ORTHO05D003197 3.5e-07 60.1 322 28.6
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 4.6e-07 59.7 314 27.7
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 7.8e-07 58.9 79 41.8
Migut.C00862 Erythranthe guttata HOM05D004095 ORTHO05D003197 7.8e-07 58.9 371 26.7
FAN15G2156 Fragaria x ananassa HOM05D004095 ORTHO05D003197 7.8e-07 58.9 246 28.0
MSTRG.1174 Avicennia marina HOM05D004095 ORTHO05D003197 1.0e-06 58.5 359 27.3
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 1.0e-06 58.5 334 25.7
Nn5g30782 Nelumbo nucifera HOM05D004095 ORTHO05D003197 1.0e-06 58.5 76 38.2
Prupe.7G171900 Prunus persica HOM05D004095 ORTHO05D003197 1.0e-06 58.5 392 24.7
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 1.7e-06 57.8 319 26.0
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 1.7e-06 57.8 244 26.6
vmacro07570 Vaccinium macrocarpon HOM05D004095 ORTHO05D003197 1.7e-06 57.8 75 38.7
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 2.3e-06 57.4 374 25.1
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 3.0e-06 57.0 335 26.9
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 3.9e-06 56.6 327 28.1
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.9e-06 56.6 317 29.0
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.9e-06 56.6 314 27.4
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 3.9e-06 56.6 78 38.5
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 3.9e-06 56.6 325 24.9
CSS0036757 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 5.1e-06 56.2 182 26.4
FAN27G1813 Fragaria x ananassa HOM05D004095 ORTHO05D003197 8.7e-06 55.5 313 26.5
Medtr1g034990 Medicago truncatula HOM05D013708 ORTHO05D003197 8.7e-06 55.5 328 27.7


User provided reference genes

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