Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 1.1e-143 513.5 285 100.0
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 1.6e-139 499.6 285 97.9
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 2.8e-120 435.6 287 86.1
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 5.0e-117 424.9 285 87.4
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 1.6e-115 419.9 286 86.7
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 4.7e-99 365.2 302 73.8
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 2.0e-89 333.2 294 70.7
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 1.7e-85 320.1 291 72.2
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 2.5e-84 316.2 291 71.1
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.4e-82 310.5 305 65.2
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 2.4e-79 299.7 304 64.8
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 3.5e-78 295.8 293 67.2
A07p03430 Brassica napus HOM05D004420 ORTHO05D005048 7.8e-78 294.7 213 81.7
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 6.2e-75 285.0 294 67.0
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 1.0e-69 267.7 285 66.3
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 1.0e-69 267.7 285 66.3
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 2.4e-58 229.9 338 49.4
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 2.5e-55 219.9 316 49.1
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 1.2e-54 217.6 289 55.7
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 8.7e-53 211.5 310 51.0
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 3.7e-51 206.1 305 49.5
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 1.1e-50 204.5 295 53.9
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 5.8e-49 198.7 296 54.1
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.3e-48 197.6 332 47.9
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.9e-44 183.7 313 47.6
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 2.8e-43 179.9 291 45.7
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 4.1e-42 176.0 303 46.2
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 3.2e-39 166.4 263 49.4
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 6.7e-37 158.7 349 38.7
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 1.5e-36 157.5 266 48.5
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 2.4e-34 150.2 349 39.5
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 6.9e-34 148.7 333 41.1
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 6.9e-34 148.7 310 43.9
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 9.1e-34 148.3 264 47.0
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 2.6e-33 146.7 358 39.9
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 4.5e-33 146.0 312 41.0
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 1.3e-32 144.4 270 47.4
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 2.9e-32 143.3 311 41.5
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 6.5e-32 142.1 334 40.1
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 1.4e-31 141.0 344 37.2
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 2.5e-31 140.2 333 36.9
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 2.5e-31 140.2 299 40.8
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 5.5e-31 139.0 318 40.9
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 1.2e-30 137.9 342 39.2
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 2.1e-30 137.1 338 39.1
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 2.1e-30 137.1 338 39.1
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 3.6e-30 136.3 322 39.8
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 6.1e-30 135.6 348 38.5
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 2.3e-29 133.7 323 39.6
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 3.0e-29 133.3 310 41.3
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 5.1e-29 132.5 299 37.8
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 8.8e-29 131.7 338 39.3
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.1e-28 131.3 310 41.0
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 2.0e-28 130.6 327 38.2
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 2.6e-28 130.2 339 36.6
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 1.7e-27 127.5 322 36.3
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.7e-27 127.5 310 38.7
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 2.8e-27 126.7 281 37.4
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 3.7e-27 126.3 265 44.5
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 3.7e-27 126.3 265 44.5
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 3.7e-27 126.3 335 37.6
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 3.7e-27 126.3 330 37.0
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 6.3e-27 125.6 298 36.2
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 8.2e-27 125.2 310 36.5
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 1.8e-26 124.0 300 40.0
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 5.3e-26 122.5 302 35.8
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 2.0e-25 120.6 306 36.3
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 2.6e-25 120.2 140 60.0
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 3.5e-25 119.8 307 38.1
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 4.5e-25 119.4 286 40.6
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 5.9e-25 119.0 298 37.6
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 7.7e-25 118.6 307 37.5
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 1.0e-24 118.2 296 35.8
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 1.0e-24 118.2 338 34.9
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 1.3e-24 117.9 331 37.2
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.2e-24 117.1 327 37.3
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.9e-24 116.7 296 36.1
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 2.9e-24 116.7 286 39.5
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 2.9e-24 116.7 294 37.8
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 2.9e-24 116.7 358 36.6
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 2.9e-24 116.7 309 36.6
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 6.5e-24 115.5 266 37.6
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 6.5e-24 115.5 337 36.5
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 8.5e-24 115.2 332 34.6
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 8.5e-24 115.2 311 35.7
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 8.5e-24 115.2 322 36.0
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.1e-23 114.8 313 37.1
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 1.1e-23 114.8 338 36.1
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.1e-23 114.8 338 36.1
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.1e-23 114.8 338 36.1
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 1.4e-23 114.4 340 35.6
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 1.9e-23 114.0 272 39.7
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 3.2e-23 113.2 334 35.9
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 4.2e-23 112.8 338 35.5
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 4.2e-23 112.8 331 36.6
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 1.2e-22 111.3 324 35.8
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 1.6e-22 110.9 266 42.9
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 1.6e-22 110.9 313 37.7
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.7e-22 110.2 295 35.9
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.7e-22 110.2 295 35.9
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 3.6e-22 109.8 298 34.6
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 6.1e-22 109.0 324 36.1
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 8.0e-22 108.6 303 34.0
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 1.0e-21 108.2 287 34.1
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 1.0e-21 108.2 287 34.1
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 2.3e-21 107.1 351 36.2
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 2.3e-21 107.1 303 36.0
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 6.7e-21 105.5 309 36.6
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 1.1e-20 104.8 318 34.9
A03p63630 Brassica napus HOM05D004420 ORTHO05D005048 1.1e-20 104.8 266 41.4
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 1.1e-20 104.8 313 36.1
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 1.5e-20 104.4 303 35.0
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 2.6e-20 103.6 298 35.6
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 4.4e-20 102.8 304 37.8
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 4.4e-20 102.8 309 35.9
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 7.4e-20 102.1 180 47.2
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 1.3e-19 101.3 298 34.6
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 1.3e-19 101.3 282 35.8
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 1.7e-19 100.9 264 40.5
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 2.2e-19 100.5 316 35.8
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 6.3e-19 99.0 315 34.0
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 8.2e-19 98.6 304 34.5
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 1.1e-18 98.2 308 33.8
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 1.4e-18 97.8 182 45.6
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 1.8e-18 97.4 316 34.8
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 3.1e-18 96.7 280 33.9
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 4.1e-18 96.3 311 34.7
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 7.0e-18 95.5 321 30.8
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 7.0e-18 95.5 297 36.7
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 1.2e-17 94.7 285 33.3
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 3.5e-17 93.2 303 34.7
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 3.5e-17 93.2 305 33.1
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 5.9e-17 92.4 269 34.9
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 1.0e-16 91.7 288 35.1
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 2.2e-16 90.5 298 34.6
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 2.9e-16 90.1 289 32.2
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 2.9e-16 90.1 291 31.3
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 2.9e-16 90.1 202 39.6
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 3.8e-16 89.7 293 34.8
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 3.8e-16 89.7 297 36.4
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 5.0e-16 89.4 296 34.8
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 8.5e-16 88.6 297 34.7
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 1.5e-15 87.8 312 33.3
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 2.5e-15 87.0 288 33.3
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 5.5e-15 85.9 258 31.0
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 5.5e-15 85.9 285 31.9
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 5.5e-15 85.9 297 37.0
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 5.5e-15 85.9 297 37.0
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 6.1e-14 82.4 301 32.9
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 1.0e-13 81.6 207 36.2
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.0e-13 81.6 301 30.9
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 1.0e-13 81.6 289 33.2
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 6.8e-13 79.0 278 32.7
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 8.8e-13 78.6 292 31.5
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 1.5e-12 77.8 141 47.5
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 4.4e-12 76.3 157 42.7
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 7.5e-12 75.5 302 32.5
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 1.8e-10 70.9 327 31.5
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 3.1e-10 70.1 187 34.2
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 5.3e-10 69.3 296 30.1
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 1.1e-07 61.6 226 30.5
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 3.2e-07 60.1 117 42.7
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 2.1e-06 57.4 287 28.6


User provided reference genes

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