Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36209 Brassica carinata HOM05D000977 ORTHO05D002086 2.4e-78 295.4 149 100.0
BcaC08g44290 Brassica carinata HOM05D007693 ORTHO05D002086 2.3e-60 235.7 149 79.9
BcaC05g28526 Brassica carinata HOM05D000977 ORTHO05D002086 1.8e-57 226.1 149 78.5
BcaB05g22932 Brassica carinata HOM05D007693 ORTHO05D002086 1.5e-56 223.0 149 75.2
BolC8t47992H Brassica oleracea HOM05D007693 ORTHO05D002086 5.4e-54 214.5 149 75.8
BcaC02g11475 Brassica carinata HOM05D007693 ORTHO05D002086 1.1e-51 206.8 149 73.2
BcaC06g36717 Brassica carinata HOM05D000977 ORTHO05D002086 8.0e-50 200.7 141 74.5
BcaC07g37330 Brassica carinata HOM05D000977 ORTHO05D002086 2.3e-44 182.6 100 93.0
BcaC08g44077 Brassica carinata HOM05D000977 ORTHO05D002086 3.0e-44 182.2 100 93.0
BcaC08g44703 Brassica carinata HOM05D000977 ORTHO05D002086 1.1e-43 180.3 100 92.0
BcaC03g14593 Brassica carinata HOM05D000977 ORTHO05D001094 1.2e-40 170.2 101 87.1
BcaC05g28328 Brassica carinata HOM05D000977 ORTHO05D094316 5.8e-40 167.9 95 90.5
BcaC05g25865 Brassica carinata HOM05D000977 ORTHO05D001094 2.2e-39 166.0 101 84.2
BcaC04g21433 Brassica carinata HOM05D000977 ORTHO05D095650 2.7e-37 159.1 95 85.3
BcaC09g50062 Brassica carinata HOM05D000977 ORTHO05D001094 3.0e-36 155.6 101 80.2
BcaC06g33964 Brassica carinata HOM05D000977 ORTHO05D001094 5.1e-36 154.8 101 80.2
BcaC02g07774 Brassica carinata HOM05D000977 ORTHO05D001094 6.6e-36 154.5 101 79.2
BcaC08g44858 Brassica carinata HOM05D000977 ORTHO05D090307 1.1e-35 153.7 95 83.2
BolC3t20530H Brassica oleracea HOM05D007693 ORTHO05D002086 8.1e-34 147.5 85 85.9
BcaC04g19406 Brassica carinata HOM05D000977 ORTHO05D001094 4.1e-30 135.2 101 73.3
BolC5t34129H Brassica oleracea HOM05D000977 ORTHO05D001094 5.4e-30 134.8 95 73.7
BcaC03g13937 Brassica carinata HOM05D000977 ORTHO05D002086 1.2e-29 133.7 72 90.3
BcaC03g15611 Brassica carinata HOM05D000977 ORTHO05D002086 2.5e-27 125.9 68 91.2
BcaB06g29566 Brassica carinata HOM05D007693 ORTHO05D002086 4.7e-26 121.7 80 76.2
BcaB05g24592 Brassica carinata HOM05D007693 ORTHO05D002086 6.9e-25 117.9 80 73.8
BcaC03g14189 Brassica carinata HOM05D000977 ORTHO05D001094 6.4e-23 111.3 75 77.3
BcaB01g02498 Brassica carinata HOM05D000977 ORTHO05D095395 2.7e-21 105.9 73 72.6
BcaB05g24372 Brassica carinata HOM05D000977 ORTHO05D093251 2.7e-21 105.9 73 72.6
BcaB06g25645 Brassica carinata HOM05D000977 ORTHO05D094941 2.7e-21 105.9 73 72.6
BcaB02g10221 Brassica carinata HOM05D007693 ORTHO05D002086 2.5e-19 99.4 103 50.5
BcaC05g25266 Brassica carinata HOM05D007693 ORTHO05D002086 7.3e-19 97.8 126 43.7
BcaC06g34108 Brassica carinata HOM05D000977 ORTHO05D001094 7.3e-19 97.8 67 76.1
BcaC05g28311 Brassica carinata HOM05D007693 ORTHO05D002086 2.4e-17 92.8 151 39.1
BcaC03g15315 Brassica carinata HOM05D007693 ORTHO05D002086 3.1e-17 92.4 110 46.4
BcaB08g34442 Brassica carinata HOM05D007693 ORTHO05D002086 5.3e-17 91.7 96 47.9
BcaB04g16994 Brassica carinata HOM05D007693 ORTHO05D002086 1.5e-16 90.1 137 39.4
Sp5g15320 Schrenkiella parvula HOM05D007693 ORTHO05D002086 4.5e-16 88.6 114 42.1
BcaC05g29744 Brassica carinata HOM05D007693 ORTHO05D002086 9.9e-16 87.4 96 49.0
BcaC06g32504 Brassica carinata HOM05D007693 ORTHO05D002086 9.9e-16 87.4 96 49.0
Carub.0003s3077 Capsella rubella HOM05D007693 ORTHO05D002086 9.9e-16 87.4 133 40.6
BcaB02g06468 Brassica carinata HOM05D007693 ORTHO05D002086 2.9e-15 85.9 114 42.1
BraA10t42989Z Brassica rapa HOM05D007693 ORTHO05D002086 2.9e-15 85.9 130 40.0
BcaB06g27532 Brassica carinata HOM05D008883 ORTHO05D011075 6.4e-15 84.7 59 71.2
BcaC03g14636 Brassica carinata HOM05D007693 ORTHO05D002086 6.4e-15 84.7 94 47.9
C07p06000 Brassica napus HOM05D007693 ORTHO05D002086 8.4e-15 84.3 144 37.5
BolC7t41011H Brassica oleracea HOM05D007693 ORTHO05D002086 8.4e-15 84.3 144 37.5
BcaC01g00556 Brassica carinata HOM05D007693 ORTHO05D002086 1.1e-14 84.0 150 33.3
BcaNung06783 Brassica carinata HOM05D000977 ORTHO05D095289 1.4e-14 83.6 57 73.7
AT2G06265 Arabidopsis thaliana HOM05D007693 ORTHO05D002086 1.9e-14 83.2 128 39.8
BcaB04g20521 Brassica carinata HOM05D007693 ORTHO05D002086 2.4e-14 82.8 107 43.9
BcaB05g22684 Brassica carinata HOM05D007693 ORTHO05D002086 4.2e-14 82.0 127 41.7
Carub.0008s0706 Capsella rubella HOM05D007693 ORTHO05D002086 5.4e-14 81.6 82 47.6
Sp7g02510 Schrenkiella parvula HOM05D007693 ORTHO05D002086 7.1e-14 81.3 134 40.3
Sp7g12150 Schrenkiella parvula HOM05D007693 ORTHO05D002086 7.1e-14 81.3 127 40.2
CARHR108830 Cardamine hirsuta HOM05D007693 ORTHO05D002086 1.2e-13 80.5 101 44.6
AL2G18820 Arabidopsis lyrata HOM05D007693 ORTHO05D002086 2.1e-13 79.7 151 36.4
AL4G16420 Arabidopsis lyrata HOM05D007693 ORTHO05D002086 2.1e-13 79.7 151 36.4
AL1G49470 Arabidopsis lyrata HOM05D007693 ORTHO05D002086 2.7e-13 79.3 137 35.8
AL9U10420 Arabidopsis lyrata HOM05D007693 ORTHO05D002086 2.7e-13 79.3 137 35.8
CARHR055980 Cardamine hirsuta HOM05D007693 ORTHO05D002086 3.5e-13 79.0 113 40.7
BraA06t24544Z Brassica rapa HOM05D007693 ORTHO05D002086 4.6e-13 78.6 93 43.0
BraA06t25204Z Brassica rapa HOM05D007693 ORTHO05D002086 4.6e-13 78.6 61 59.0
Thhalv10012038m.g Eutrema salsugineum HOM05D007693 ORTHO05D002086 4.6e-13 78.6 162 34.0
AL22U10020 Arabidopsis lyrata HOM05D007693 ORTHO05D002086 7.9e-13 77.8 151 35.8
C09p24970 Brassica napus HOM05D007693 ORTHO05D002086 1.0e-12 77.4 114 38.6
BcaC07g37014 Brassica carinata HOM05D007693 ORTHO05D002086 2.3e-12 76.3 65 58.5
BcaC06g33294 Brassica carinata HOM05D007693 ORTHO05D002086 3.0e-12 75.9 62 54.8
Thhalv10003362m.g Eutrema salsugineum HOM05D007693 ORTHO05D002086 3.0e-12 75.9 118 38.1
BcaB06g27481 Brassica carinata HOM05D007693 ORTHO05D002086 6.7e-12 74.7 81 49.4
Thhalv10011039m.g Eutrema salsugineum HOM05D007693 ORTHO05D002086 6.7e-12 74.7 132 35.6
A04p22190 Brassica napus HOM05D007693 ORTHO05D002086 8.7e-12 74.3 83 50.6
BraA10t43040Z Brassica rapa HOM05D007693 ORTHO05D002086 8.7e-12 74.3 83 50.6
Sp6g12290 Schrenkiella parvula HOM05D007693 ORTHO05D002086 1.1e-11 73.9 160 35.6
SpUn1230_0020 Schrenkiella parvula HOM05D007693 ORTHO05D002086 1.1e-11 73.9 161 32.3
BcaB07g32567 Brassica carinata HOM05D001038 ORTHO05D010763 1.9e-11 73.2 98 39.8
BraA05t22114Z Brassica rapa HOM05D007693 ORTHO05D002086 3.3e-11 72.4 83 49.4
BcaC04g21625 Brassica carinata HOM05D001038 ORTHO05D016703 5.6e-11 71.6 72 50.0
Thhalv10003330m.g Eutrema salsugineum HOM05D007693 ORTHO05D002086 5.6e-11 71.6 137 35.0
Sp1g34950 Schrenkiella parvula HOM05D007693 ORTHO05D002086 7.4e-11 71.2 79 45.6
BcaB04g17832 Brassica carinata HOM05D007693 ORTHO05D002086 9.6e-11 70.9 115 35.7
Thhalv10029337m.g Eutrema salsugineum HOM05D007693 ORTHO05D002086 1.3e-10 70.5 78 43.6
BcaB06g26026 Brassica carinata HOM05D007693 ORTHO05D002086 3.7e-10 68.9 80 45.0
Thhalv10002853m.g Eutrema salsugineum HOM05D007693 ORTHO05D002086 8.1e-10 67.8 118 38.1
BcaB08g35719 Brassica carinata HOM05D007693 ORTHO05D002086 1.1e-09 67.4 111 39.6
BcaC06g35712 Brassica carinata HOM05D007693 ORTHO05D002086 1.1e-09 67.4 76 46.1
Thhalv10017745m.g Eutrema salsugineum HOM05D007693 ORTHO05D002086 1.4e-09 67.0 139 37.4
Sp6g08580 Schrenkiella parvula HOM05D018387 ORTHO05D002086 2.4e-09 66.2 79 43.0
AT2G37125 Arabidopsis thaliana HOM05D007462 ORTHO05D011074 3.1e-09 65.9 121 36.4
AT2G07505 Arabidopsis thaliana HOM05D007693 ORTHO05D002086 5.3e-09 65.1 135 33.3
THA.LOC104817596 Tarenaya hassleriana HOM05D007462 ORTHO05D002086 6.9e-09 64.7 72 44.4
BcaB04g17442 Brassica carinata HOM05D007693 ORTHO05D002086 1.5e-08 63.5 117 36.8
AT1G48285 Arabidopsis thaliana HOM05D007462 ORTHO05D011074 2.0e-08 63.2 146 33.6
BcaNung00058 Brassica carinata HOM05D007462 ORTHO05D011074 2.6e-08 62.8 130 30.0
BolC5t32402H Brassica oleracea HOM05D007693 ORTHO05D002086 2.6e-08 62.8 77 45.5
BcaB03g16439 Brassica carinata HOM05D007462 ORTHO05D011074 3.4e-08 62.4 73 45.2
BolC9t56385H Brassica oleracea HOM05D000675 ORTHO05D002086 3.4e-08 62.4 118 34.7
BraA10t43661Z Brassica rapa HOM05D007693 ORTHO05D002086 4.5e-08 62.0 52 55.8
Sp5g21400 Schrenkiella parvula HOM05D018387 ORTHO05D002086 4.5e-08 62.0 75 42.7
BcaC05g25361 Brassica carinata HOM05D000675 ORTHO05D002086 1.3e-07 60.5 60 48.3
BcaNung01792 Brassica carinata HOM05D007693 ORTHO05D002086 1.3e-07 60.5 53 60.4
C06p13860 Brassica napus HOM05D000675 ORTHO05D002086 1.3e-07 60.5 123 30.9
CARHR216410 Cardamine hirsuta HOM05D000675 ORTHO05D002086 1.3e-07 60.5 74 39.2
BcaB08g34481 Brassica carinata HOM05D000675 ORTHO05D002086 1.7e-07 60.1 86 38.4
THA.LOC104818502 Tarenaya hassleriana HOM05D007693 ORTHO05D002086 1.7e-07 60.1 75 37.3
BcaB04g19811 Brassica carinata HOM05D007462 ORTHO05D002086 2.9e-07 59.3 83 39.8
BolC1t02623H Brassica oleracea HOM05D007462 ORTHO05D011074 2.9e-07 59.3 127 30.7
BcaB05g24643 Brassica carinata HOM05D000675 ORTHO05D000395 3.8e-07 58.9 69 42.0
BcaC06g35799 Brassica carinata HOM05D000675 ORTHO05D002086 3.8e-07 58.9 122 31.1
Aa31LG2G13790 Aethionema arabicum HOM05D007462 ORTHO05D002086 4.9e-07 58.5 147 29.9
BcaB05g22367 Brassica carinata HOM05D000675 ORTHO05D000395 4.9e-07 58.5 89 41.6
BcaB04g16996 Brassica carinata HOM05D000675 ORTHO05D002086 6.4e-07 58.2 72 43.1
BcaC01g05867 Brassica carinata HOM05D007462 ORTHO05D011074 6.4e-07 58.2 81 34.6
BcaC04g22910 Brassica carinata HOM05D007462 ORTHO05D011074 6.4e-07 58.2 81 34.6
BcaC07g38352 Brassica carinata HOM05D007462 ORTHO05D011074 6.4e-07 58.2 81 34.6
Sp7g13130 Schrenkiella parvula HOM05D007693 ORTHO05D002086 6.4e-07 58.2 60 48.3
A05p09860 Brassica napus HOM05D000675 ORTHO05D002086 8.4e-07 57.8 70 42.9
C04p27870 Brassica napus HOM05D000675 ORTHO05D032657 8.4e-07 57.8 109 34.9
BolC3t17569H Brassica oleracea HOM05D000675 ORTHO05D002086 8.4e-07 57.8 72 41.7
BolC4t24330H Brassica oleracea HOM05D000675 ORTHO05D032657 8.4e-07 57.8 109 34.9
THA.LOC104806974 Tarenaya hassleriana HOM05D007462 ORTHO05D002086 8.4e-07 57.8 117 31.6
BcaC05g26662 Brassica carinata HOM05D007462 ORTHO05D011074 1.1e-06 57.4 56 46.4
BcaB05g23148 Brassica carinata HOM05D007693 ORTHO05D002086 1.4e-06 57.0 90 40.0
BcaC05g28653 Brassica carinata HOM05D007462 ORTHO05D011074 1.4e-06 57.0 125 29.6
Carub.0003s2743 Capsella rubella HOM05D000675 ORTHO05D002086 1.4e-06 57.0 130 33.1
BcaC08g43982 Brassica carinata HOM05D000675 ORTHO05D002086 1.9e-06 56.6 123 30.1
BolC6t36565H Brassica oleracea HOM05D000675 ORTHO05D002086 1.9e-06 56.6 123 30.1
Sp7g03170 Schrenkiella parvula HOM05D018387 ORTHO05D002086 1.9e-06 56.6 48 52.1
BcaB05g24177 Brassica carinata HOM05D000675 ORTHO05D000395 2.4e-06 56.2 72 38.9
BcaC01g02181 Brassica carinata HOM05D000675 ORTHO05D002086 2.4e-06 56.2 126 32.5
C04p58390 Brassica napus HOM05D007462 ORTHO05D002086 2.4e-06 56.2 54 51.9
BolC6t36760H Brassica oleracea HOM05D007462 ORTHO05D002086 2.4e-06 56.2 54 51.9
AT4G04775 Arabidopsis thaliana HOM05D000675 ORTHO05D002086 3.2e-06 55.8 110 28.2
BcaB05g24191 Brassica carinata HOM05D000675 ORTHO05D002086 3.2e-06 55.8 55 43.6
BcaB06g26738 Brassica carinata HOM05D007462 ORTHO05D002086 3.2e-06 55.8 54 50.0
BcaB06g27534 Brassica carinata HOM05D000675 ORTHO05D000395 3.2e-06 55.8 72 37.5
BcaC08g44362 Brassica carinata HOM05D000675 ORTHO05D002086 3.2e-06 55.8 55 45.5
C04p44900 Brassica napus HOM05D000675 ORTHO05D002086 3.2e-06 55.8 122 30.3
BraA05t21229Z Brassica rapa HOM05D007462 ORTHO05D002086 3.2e-06 55.8 74 39.2
THA.LOC104810579 Tarenaya hassleriana HOM05D028755 ORTHO05D002086 3.2e-06 55.8 75 41.3
BcaB03g15657 Brassica carinata HOM05D000675 ORTHO05D002086 4.2e-06 55.5 87 37.9
BcaB04g17468 Brassica carinata HOM05D007462 ORTHO05D011074 4.2e-06 55.5 96 32.3
BcaB04g18049 Brassica carinata HOM05D007693 ORTHO05D015462 4.2e-06 55.5 126 34.9
BcaB07g33397 Brassica carinata HOM05D004489 ORTHO05D000740 4.2e-06 55.5 72 40.3
BcaB07g33925 Brassica carinata HOM05D000888 ORTHO05D000740 4.2e-06 55.5 120 31.7
BcaC03g14558 Brassica carinata HOM05D000675 ORTHO05D002086 4.2e-06 55.5 114 33.3
BcaC08g44171 Brassica carinata HOM05D007462 ORTHO05D002086 4.2e-06 55.5 54 51.9
A09p29990 Brassica napus HOM05D000675 ORTHO05D002086 4.2e-06 55.5 70 41.4
C01p31580 Brassica napus HOM05D000675 ORTHO05D013510 4.2e-06 55.5 132 31.1
C09p27150 Brassica napus HOM05D000675 ORTHO05D002086 4.2e-06 55.5 101 32.7
BraA09t38562Z Brassica rapa HOM05D000675 ORTHO05D002086 4.2e-06 55.5 70 41.4
BcaB04g18535 Brassica carinata HOM05D000675 ORTHO05D002086 5.5e-06 55.1 68 41.2
BcaB07g31602 Brassica carinata HOM05D000675 ORTHO05D000395 5.5e-06 55.1 70 38.6
BcaC01g04356 Brassica carinata HOM05D000675 ORTHO05D002086 5.5e-06 55.1 60 43.3
BcaC03g14861 Brassica carinata HOM05D007462 ORTHO05D011074 5.5e-06 55.1 126 27.8
BolC4t27363H Brassica oleracea HOM05D007462 ORTHO05D002086 5.5e-06 55.1 54 50.0
BolC8t46873H Brassica oleracea HOM05D000675 ORTHO05D002086 5.5e-06 55.1 72 40.3
BraA03t15123Z Brassica rapa HOM05D000675 ORTHO05D002086 5.5e-06 55.1 72 40.3
CARHR217030 Cardamine hirsuta HOM05D007462 ORTHO05D011074 5.5e-06 55.1 74 41.9
BcaB01g01312 Brassica carinata HOM05D000675 ORTHO05D003044 7.1e-06 54.7 122 30.3
BcaB04g17689 Brassica carinata HOM05D007462 ORTHO05D002086 7.1e-06 54.7 54 50.0
BcaB07g32139 Brassica carinata HOM05D000675 ORTHO05D000395 7.1e-06 54.7 70 40.0
Thhalv10022239m.g Eutrema salsugineum HOM05D007693 ORTHO05D002086 7.1e-06 54.7 114 34.2
BcaB04g18178 Brassica carinata HOM05D000675 ORTHO05D011634 9.3e-06 54.3 138 31.2
BcaC02g07772 Brassica carinata HOM05D007462 ORTHO05D002086 9.3e-06 54.3 53 49.1
BcaC03g14955 Brassica carinata HOM05D007462 ORTHO05D002086 9.3e-06 54.3 53 49.1
BcaC08g43955 Brassica carinata HOM05D000675 ORTHO05D032734 9.3e-06 54.3 118 31.4
C06p13560 Brassica napus HOM05D000675 ORTHO05D032734 9.3e-06 54.3 116 29.3
BolC1t03092H Brassica oleracea HOM05D000675 ORTHO05D003044 9.3e-06 54.3 72 37.5
BolC4t25938H Brassica oleracea HOM05D000675 ORTHO05D002086 9.3e-06 54.3 109 33.9
BolC6t36520H Brassica oleracea HOM05D000675 ORTHO05D032734 9.3e-06 54.3 118 31.4


User provided reference genes

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