Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36100 Brassica carinata HOM05D001372 ORTHO05D007311 1.5e-42 175.6 82 100.0
C07p07850 Brassica napus HOM05D001372 ORTHO05D007311 1.5e-42 175.6 82 100.0
BolC7t41203H Brassica oleracea HOM05D001372 ORTHO05D007311 2.0e-42 175.3 81 100.0
BcaB03g16342 Brassica carinata HOM05D001372 ORTHO05D007311 1.3e-41 172.6 82 97.6
A07p04870 Brassica napus HOM05D001372 ORTHO05D007311 2.2e-41 171.8 82 97.6
CARHR106260 Cardamine hirsuta HOM05D001372 ORTHO05D007311 4.9e-41 170.6 82 96.3
Sp3g29230 Schrenkiella parvula HOM05D001372 ORTHO05D007311 6.4e-41 170.2 82 97.6
BraA07t28279Z Brassica rapa HOM05D001372 ORTHO05D007311 1.1e-40 169.5 80 96.2
Carub.0003s2981 Capsella rubella HOM05D001372 ORTHO05D007311 4.2e-40 167.5 80 95.0
AT2G15910 Arabidopsis thaliana HOM05D001372 ORTHO05D002010 2.7e-39 164.9 79 94.9
BcaC01g03046 Brassica carinata HOM05D001372 ORTHO05D007311 2.7e-39 164.9 82 95.1
THA.LOC104807341 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 4.6e-39 164.1 82 91.5
Aa31LG8G13440 Aethionema arabicum HOM05D001372 ORTHO05D007311 1.3e-38 162.5 82 91.5
AL3G47750 Arabidopsis lyrata HOM05D001372 ORTHO05D002010 2.3e-38 161.8 78 93.6
BcaB08g34618 Brassica carinata HOM05D001372 ORTHO05D007311 3.0e-38 161.4 82 93.9
C03p56710 Brassica napus HOM05D001372 ORTHO05D002010 3.0e-38 161.4 80 95.0
BolC3t17955H Brassica oleracea HOM05D001372 ORTHO05D002010 3.0e-38 161.4 80 95.0
BraA03t13697Z Brassica rapa HOM05D001372 ORTHO05D002010 3.0e-38 161.4 80 93.8
THA.LOC104819597 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 3.0e-38 161.4 82 90.2
A03p45650 Brassica napus HOM05D001372 ORTHO05D002010 1.5e-37 159.1 80 92.5
Thhalv10023083m.g Eutrema salsugineum HOM05D001372 ORTHO05D002010 6.2e-36 153.7 79 88.6
Cpa.g.sc62.81 Carica papaya HOM05D001372 ORTHO05D007311 2.6e-34 148.3 82 80.5
Peaxi162Scf00016g00132 Petunia axillaris HOM05D001372 ORTHO05D007311 9.9e-34 146.4 82 80.5
Migut.N01213 Erythranthe guttata HOM05D001372 ORTHO05D007311 2.2e-33 145.2 82 80.5
Manes.15G145700 Manihot esculenta HOM05D001372 ORTHO05D007311 2.2e-33 145.2 87 80.5
SalBow5G1173 Salvia bowleyana HOM05D001372 ORTHO05D007311 2.2e-33 145.2 82 81.7
SalBow3G1216 Salvia bowleyana HOM05D001372 ORTHO05D007311 2.9e-33 144.8 82 81.7
COL.COLO4_17203 Corchorus olitorius HOM05D001372 ORTHO05D007311 3.8e-33 144.4 83 79.5
Duzib132G0052 Durio zibethinus HOM05D001372 ORTHO05D007311 6.4e-33 143.7 83 79.5
Solyc01g109070.2 Solanum lycopersicum HOM05D001372 ORTHO05D007311 6.4e-33 143.7 82 78.0
Sopen01g051270 Solanum pennellii HOM05D001372 ORTHO05D007311 6.4e-33 143.7 82 78.0
TWI38G1937 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 6.4e-33 143.7 83 79.5
COL.COLO4_17775 Corchorus olitorius HOM05D001372 ORTHO05D007311 8.4e-33 143.3 83 80.7
Medtr4g068370 Medicago truncatula HOM05D001372 ORTHO05D007311 8.4e-33 143.3 82 79.3
Nn2g15585 Nelumbo nucifera HOM05D001372 ORTHO05D007311 8.4e-33 143.3 86 79.1
Thecc.02G028600 Theobroma cacao HOM05D001372 ORTHO05D007311 8.4e-33 143.3 83 79.5
Duzib052G0457 Durio zibethinus HOM05D001372 ORTHO05D007311 1.1e-32 142.9 83 79.5
Lj3g0024398 Lotus japonicus HOM05D001372 ORTHO05D007311 1.1e-32 142.9 76 82.9
DCAR_022076 Daucus carota HOM05D001372 ORTHO05D007311 1.4e-32 142.5 84 79.8
Lsat_1_v5_gn_9_109081 Lactuca sativa HOM05D001372 ORTHO05D007311 1.4e-32 142.5 83 79.5
Ca_20817_v3 Cicer arietinum L. HOM05D001372 ORTHO05D007311 1.9e-32 142.1 87 75.9
Gorai.008G044200 Gossypium raimondii HOM05D001372 ORTHO05D007311 1.9e-32 142.1 83 79.5
Medtr0311s0010 Medicago truncatula HOM05D001372 ORTHO05D007311 1.9e-32 142.1 82 76.8
Gohir.D12G042200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 2.4e-32 141.7 83 79.5
Oeu010568.1 Olea europaea HOM05D001372 ORTHO05D007311 2.4e-32 141.7 82 79.3
CiPaw.05G058700 Carya illinoinensis HOM05D001372 ORTHO05D007311 3.2e-32 141.4 85 76.5
Cc02_g18240 Coffea canephora HOM05D001372 ORTHO05D007311 3.2e-32 141.4 84 78.6
Glyma.11G123600 Glycine max HOM05D001372 ORTHO05D007311 3.2e-32 141.4 76 81.6
Psat1g039160 Pisum sativum HOM05D001372 ORTHO05D007311 3.2e-32 141.4 87 75.9
PGR042G3549 Punica granatum HOM05D001372 ORTHO05D007311 4.2e-32 141.0 84 78.6
Ciclev10030268m.g Citrus clementina HOM05D001372 ORTHO05D007311 5.4e-32 140.6 83 78.3
Gohir.A12G030200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 5.4e-32 140.6 83 78.3
CAN.G322.87 Capsicum annuum HOM05D001372 ORTHO05D007311 7.1e-32 140.2 82 74.4
TPR.G10235 Trifolium pratense HOM05D001372 ORTHO05D007311 7.1e-32 140.2 84 77.4
TWI38G0580 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 7.1e-32 140.2 83 77.1
unitig_60.g25449 Utricularia gibba HOM05D001372 ORTHO05D007311 7.1e-32 140.2 82 76.8
Atru.chr13.1402 Acer truncatum HOM05D001372 ORTHO05D007311 9.3e-32 139.8 84 79.8
Eucgr.F03329 Eucalyptus grandis HOM05D001372 ORTHO05D007311 9.3e-32 139.8 83 79.5
Manes.17G096600 Manihot esculenta HOM05D001372 ORTHO05D007311 9.3e-32 139.8 87 75.9
CANSAT80G1477 Cannabis sativa HOM05D001372 ORTHO05D007311 1.2e-31 139.4 85 76.5
Glyma.12G048200 Glycine max HOM05D001372 ORTHO05D007311 1.2e-31 139.4 76 81.6
Lalb_Chr01g0002991 Lupinus albus HOM05D001372 ORTHO05D007311 1.2e-31 139.4 82 75.6
Sed0000118 Sechium edule HOM05D001372 ORTHO05D007311 1.2e-31 139.4 69 87.0
CSS0001418 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 1.6e-31 139.0 82 78.0
CSS0020019 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 1.6e-31 139.0 82 78.0
Cfa004947 Carpinus fangiana HOM05D001372 ORTHO05D007311 1.6e-31 139.0 86 73.3
QL11p039238 Quercus lobata HOM05D001372 ORTHO05D007311 1.6e-31 139.0 82 75.6
Gohir.A09G221800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 2.1e-31 138.7 83 78.3
Hma1.2p1_1353F.1_g277710 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 2.1e-31 138.7 86 75.6
vmacro02159 Vaccinium macrocarpon HOM05D001193 ORTHO05D007311 2.1e-31 138.7 83 77.1
ClCG02G005510 Citrullus lanatus HOM05D001372 ORTHO05D007311 2.7e-31 138.3 70 85.7
MELO3C018416.2 Cucumis melo HOM05D001372 ORTHO05D007311 2.7e-31 138.3 86 75.6
Dinv28822 Davidia involucrata HOM05D001372 ORTHO05D007311 2.7e-31 138.3 86 74.4
Nitab4.5_0008194g0080 Nicotiana tabacum HOM05D001372 ORTHO05D007311 2.7e-31 138.3 71 85.9
Psat5g239440 Pisum sativum HOM05D001372 ORTHO05D007311 2.7e-31 138.3 69 87.0
Psat5g295360 Pisum sativum HOM05D001372 ORTHO05D007311 2.7e-31 138.3 69 87.0
Aqoxy230s002 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 3.5e-31 137.9 83 74.7
Aqoxy4G03213 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 3.5e-31 137.9 83 74.7
Hma1.2p1_0584F.1_g183260 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 3.5e-31 137.9 82 73.2
Nn7g36402 Nelumbo nucifera HOM05D001372 ORTHO05D007311 3.5e-31 137.9 86 75.6
Potri.009G109100 Populus trichocarpa HOM05D001372 ORTHO05D007311 3.5e-31 137.9 86 74.4
AUR62021787 Chenopodium quinoa HOM05D001372 ORTHO05D007311 4.6e-31 137.5 83 75.9
Rhsim11G0170800 Rhododendron simsii HOM05D001193 ORTHO05D007311 4.6e-31 137.5 81 76.5
AUR62008308 Chenopodium quinoa HOM05D001372 ORTHO05D007311 6.0e-31 137.1 83 74.7
AUR62008309 Chenopodium quinoa HOM05D001372 ORTHO05D007311 6.0e-31 137.1 83 74.7
Haze_02462 Corylus avellana HOM05D001372 ORTHO05D007311 6.0e-31 137.1 72 80.6
Haze_02464 Corylus avellana HOM05D001372 ORTHO05D007311 6.0e-31 137.1 86 72.1
Psat2g085760 Pisum sativum HOM05D001372 ORTHO05D007311 6.0e-31 137.1 87 75.9
EL10Ac5g10871 Beta vulgaris HOM05D001372 ORTHO05D007311 7.8e-31 136.7 76 77.6
MD10G1086600 Malus domestica HOM05D001372 ORTHO05D007311 7.8e-31 136.7 84 77.4
Oeu003708.1 Olea europaea HOM05D001372 ORTHO05D007311 7.8e-31 136.7 79 78.5
arahy.Tifrunner.gnm1.ann1.34YEZP Arachis hypogaea HOM05D001372 ORTHO05D007311 1.0e-30 136.3 84 73.8
AUR62025645 Chenopodium quinoa HOM05D001372 ORTHO05D007311 1.0e-30 136.3 83 74.7
CsaV3_7G010120 Cucumis sativus L. HOM05D001372 ORTHO05D007311 1.0e-30 136.3 86 74.4
HanXRQChr03g0074331 Helianthus annuus HOM05D001372 ORTHO05D007311 1.0e-30 136.3 83 75.9
CAN.G134.164 Capsicum annuum HOM05D001372 ORTHO05D007311 1.3e-30 136.0 82 73.2
arahy.Tifrunner.gnm1.ann1.FTA1AJ Arachis hypogaea HOM05D001372 ORTHO05D007311 1.7e-30 135.6 69 84.1
Prupe.8G112600 Prunus persica HOM05D001372 ORTHO05D007311 1.7e-30 135.6 84 76.2
Sc14g0001710 Simmondsia chinensis HOM05D001372 ORTHO05D007311 1.7e-30 135.6 84 73.8
Aqoxy6G00480 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 2.3e-30 135.2 83 73.5
Eucgr.G01534 Eucalyptus grandis HOM05D001372 ORTHO05D007311 2.3e-30 135.2 83 75.9
Phvul.011G050400 Phaseolus vulgaris HOM05D001372 ORTHO05D007311 2.3e-30 135.2 76 76.3
Nitab4.5_0004946g0010 Nicotiana tabacum HOM05D001372 ORTHO05D007311 3.0e-30 134.8 71 83.1
ATR0807G173 Amborella trichopoda HOM05D001372 ORTHO05D007311 3.9e-30 134.4 80 72.5
Ah.02g112890 Amaranthus hybridus HOM05D001372 ORTHO05D007311 5.1e-30 134.0 84 73.8
Ah.02g112920 Amaranthus hybridus HOM05D001372 ORTHO05D007311 5.1e-30 134.0 84 73.8
RcHm_v2.0_Chr6g0260171 Rosa chinensis HOM05D001372 ORTHO05D007311 5.1e-30 134.0 83 73.5
RcHm_v2.0_Chr6g0260511 Rosa chinensis HOM05D001372 ORTHO05D007311 5.1e-30 134.0 83 73.5
RcHm_v2.0_Chr6g0260771 Rosa chinensis HOM05D001372 ORTHO05D007311 5.1e-30 134.0 82 74.4
HPP92_025391 Vanilla planifolia HOM05D001372 ORTHO05D007311 5.1e-30 134.0 82 73.2
Eucgr.G00508 Eucalyptus grandis HOM05D001372 ORTHO05D007311 6.6e-30 133.7 83 74.7
FAN28G0653 Fragaria x ananassa HOM05D001372 ORTHO05D007311 6.6e-30 133.7 83 72.3
FAN19G1239 Fragaria x ananassa HOM05D001372 ORTHO05D007311 1.1e-29 132.9 82 70.7
FAN26G1996 Fragaria x ananassa HOM05D001372 ORTHO05D007311 1.5e-29 132.5 82 72.0
FAN28G0897 Fragaria x ananassa HOM05D001372 ORTHO05D007311 1.9e-29 132.1 82 70.7
CSS0021822 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 3.3e-29 131.3 84 72.6
Pp3c17_11290 Physcomitrium patens HOM05D001372 ORTHO05D007311 3.3e-29 131.3 86 70.9
RcHm_v2.0_Chr6g0260501 Rosa chinensis HOM05D001372 ORTHO05D007311 3.3e-29 131.3 83 72.3
Ah.11g045560 Amaranthus hybridus HOM05D001372 ORTHO05D007311 5.6e-29 130.6 84 72.6
Sabra09G0083300 Salix brachista HOM05D001372 ORTHO05D007311 5.6e-29 130.6 86 69.8
CDE07G0396 Ceratophyllum demersum HOM05D001372 ORTHO05D007311 9.6e-29 129.8 85 68.2
Atru.chr5.2877 Acer truncatum HOM05D001372 ORTHO05D007311 2.1e-28 128.6 76 75.0
CDE09G1189 Ceratophyllum demersum HOM05D001455 ORTHO05D001587 3.6e-28 127.9 85 68.2
Gorai.006G245400 Gossypium raimondii HOM05D001372 ORTHO05D007311 8.1e-28 126.7 83 73.5
Zm00001eb389160 Zea mays HOM05D001372 ORTHO05D007311 5.3e-27 124.0 81 69.1
Cre16.g653850 Chlamydomonas reinhardtii HOM05D001372 ORTHO05D007311 1.5e-26 122.5 64 81.2
Gohir.A04G115800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 1.5e-26 122.5 73 76.7
Os06g0661600 Oryza sativa ssp. japonica HOM05D001372 ORTHO05D007311 5.8e-26 120.6 81 69.1
AagrBONN_evm.TU.Sc2ySwM_344.4003 Anthoceros agrestis HOM05D001372 ORTHO05D007311 7.6e-26 120.2 83 66.3
Mapoly0002s0208 Marchantia polymorpha HOM05D001372 ORTHO05D007311 7.6e-26 120.2 71 71.8
SMO111G0193 Selaginella moellendorffii HOM05D001372 ORTHO05D007311 4.2e-24 114.4 58 82.8
arahy.Tifrunner.gnm1.ann1.YI8NBA Arachis hypogaea HOM05D018927 ORTHO05D003639 9.3e-24 113.2 54 88.9
SHI05448 Sapria himalayana HOM05D001372 ORTHO05D007311 1.6e-23 112.5 63 73.0
Lsat_1_v5_gn_2_32760 Lactuca sativa HOM05D001372 ORTHO05D007311 2.7e-23 111.7 68 72.1
Nitab4.5_0001401g0190 Nicotiana tabacum HOM05D001372 ORTHO05D007311 1.0e-22 109.8 51 90.2
Zm00001eb274880 Zea mays HOM05D001372 ORTHO05D007311 8.7e-22 106.7 54 81.5
HanXRQChr07g0193971 Helianthus annuus HOM05D001372 ORTHO05D007311 4.3e-21 104.4 62 71.0
MCO08G009 Micromonas commoda HOM05D001372 ORTHO05D007311 8.1e-20 100.1 73 53.4
RcHm_v2.0_Chr6g0259971 Rosa chinensis HOM05D001372 ORTHO05D007311 1.1e-16 89.7 61 67.2
PRCOL_00006747 Prasinoderma coloniale HOM05D001372 ORTHO05D007311 5.5e-16 87.4 59 61.0
Cc02_g18230 Coffea canephora HOM05D001372 ORTHO05D007311 2.7e-15 85.1 44 79.5


User provided reference genes

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