Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36075 Brassica carinata HOM05D008497 ORTHO05D003355 0.0e+00 1327.4 764 100.0
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 0.0e+00 1290.4 764 98.2
C07p08170 Brassica napus HOM05D008497 ORTHO05D003355 0.0e+00 1288.1 764 98.0
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 5.8e-269 931.0 796 73.9
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 8.7e-132 475.3 992 42.2
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 5.8e-128 462.6 997 40.9
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 7.6e-128 462.2 988 41.3
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 3.8e-127 459.9 1002 41.9
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 4.9e-127 459.5 913 43.8
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 5.4e-126 456.1 997 40.8
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 4.8e-114 416.4 987 39.8
A07p05110 Brassica napus HOM05D008497 ORTHO05D003355 6.5e-111 406.0 538 60.4
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 4.7e-85 320.1 1114 34.9
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 1.7e-50 205.3 972 34.7
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 4.1e-49 200.7 886 35.1
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 6.0e-48 196.8 1026 32.7
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 2.6e-43 181.4 143 69.9
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 3.7e-42 177.6 143 69.2
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 3.7e-42 177.6 143 69.2
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.1e-38 166.0 797 34.3
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 8.9e-36 156.4 971 28.8
BcaC06g31928 Brassica carinata HOM05D008497 ORTHO05D003355 7.3e-22 110.2 95 63.2
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.4e-20 105.9 326 31.3
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 5.8e-19 100.5 178 39.3
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 4.2e-17 94.4 101 49.5
Aa31LG7G9560 Aethionema arabicum HOM05D008497 ORTHO05D003355 6.0e-16 90.5 927 24.1
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.3e-15 88.6 162 36.4
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 3.9e-15 87.8 92 45.7
BcaC04g22710 Brassica carinata HOM05D008497 ORTHO05D027096 5.1e-15 87.4 75 66.7
BolC9t54519H Brassica oleracea HOM05D008497 ORTHO05D027096 5.1e-15 87.4 75 66.7
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 6.6e-15 87.0 168 36.3
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 6.6e-15 87.0 111 40.5
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 8.7e-15 86.7 266 30.5
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 1.1e-14 86.3 101 44.6
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 1.9e-14 85.5 89 47.2
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 3.3e-14 84.7 91 44.0
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 3.3e-14 84.7 90 44.4
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 4.3e-14 84.3 202 34.7
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 4.3e-14 84.3 108 43.5
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 4.3e-14 84.3 91 44.0
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 4.3e-14 84.3 110 39.1
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 5.6e-14 84.0 223 32.7
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 5.6e-14 84.0 267 33.7
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 5.6e-14 84.0 94 42.6
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 5.6e-14 84.0 198 30.8
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 5.6e-14 84.0 89 44.9
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 5.6e-14 84.0 89 44.9
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 7.3e-14 83.6 102 44.1
Thhalv10028078m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 3.6e-13 81.3 158 37.3
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 3.6e-13 81.3 106 41.5
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 6.2e-13 80.5 101 37.6
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 8.1e-13 80.1 91 45.1
AL1G63810 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 8.1e-13 80.1 291 29.9
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 1.1e-12 79.7 96 40.6
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 2.4e-12 78.6 91 38.5
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 3.1e-12 78.2 181 32.6
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 3.1e-12 78.2 248 29.0
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 1.2e-11 76.3 89 41.6
Carub.0003s3440 Capsella rubella HOM05D008497 ORTHO05D003355 4.5e-11 74.3 136 32.4
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 4.5e-11 74.3 112 32.1
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 7.6e-11 73.6 157 34.4
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 7.6e-11 73.6 100 37.0
Sp7g04860 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.3e-10 72.8 212 33.0
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 2.2e-10 72.0 212 29.7
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 2.9e-10 71.6 92 40.2
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 3.8e-10 71.2 246 30.5
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 4.9e-10 70.9 226 28.8
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 4.9e-10 70.9 481 22.9
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 8.4e-10 70.1 184 30.4
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 1.1e-09 69.7 405 24.4
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 1.4e-09 69.3 173 30.6
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 1.9e-09 68.9 91 36.3
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 1.9e-09 68.9 427 23.9
Aa31sc26G130 Aethionema arabicum HOM05D008497 ORTHO05D003355 2.4e-09 68.6 120 35.8
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 3.2e-09 68.2 301 24.3
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 4.2e-09 67.8 478 22.4
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 4.2e-09 67.8 97 32.0
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 5.4e-09 67.4 261 28.4
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 5.4e-09 67.4 236 27.5
AT4G00580 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 7.1e-09 67.0 283 25.4
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 7.1e-09 67.0 1010 23.4
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 9.3e-09 66.6 128 34.4
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.2e-08 66.2 355 26.2
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 1.2e-08 66.2 402 25.1
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.6e-08 65.9 128 34.4
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 2.1e-08 65.5 333 27.3
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 2.7e-08 65.1 403 25.6
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 2.7e-08 65.1 128 33.6
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 3.5e-08 64.7 365 25.5
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 3.5e-08 64.7 325 25.8
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 3.5e-08 64.7 128 35.2
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 3.5e-08 64.7 88 39.8
THA.LOC104808433 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 3.5e-08 64.7 98 35.7
THA.LOC104825537 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 3.5e-08 64.7 98 35.7
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 4.6e-08 64.3 244 29.1
RcHm_v2.0_Chr4g0432241 Rosa chinensis HOM05D005863 ORTHO05D017031 6.0e-08 63.9 90 43.3
THA.LOC104825538 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.0e-07 63.2 72 41.7
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 1.8e-07 62.4 277 24.2
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 1.8e-07 62.4 600 24.0
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 2.3e-07 62.0 557 20.8
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 3.9e-07 61.2 88 36.4
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 6.7e-07 60.5 269 25.7
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 8.7e-07 60.1 167 27.5
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 1.1e-06 59.7 258 26.0
Carub.0001s4470 Capsella rubella HOM05D008497 ORTHO05D003355 3.3e-06 58.2 198 26.3
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 3.3e-06 58.2 88 39.8
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 4.3e-06 57.8 249 26.1
ECA233G0282 Erigeron canadensis HOM05D007119 ORTHO05D009220 4.3e-06 57.8 83 36.1
FAN12G0897 Fragaria x ananassa HOM05D005863 ORTHO05D017031 5.6e-06 57.4 90 38.9
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 5.6e-06 57.4 88 30.7
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 5.6e-06 57.4 113 29.2
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 7.4e-06 57.0 524 22.5
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 7.4e-06 57.0 333 27.0
Actinidia30696 Actinidia chinensis HOM05D005863 ORTHO05D003355 9.6e-06 56.6 63 44.4


User provided reference genes

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