Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36046 Brassica carinata HOM05D006149 ORTHO05D007341 7.9e-82 307.4 194 100.0
BcaC04g22139 Brassica carinata HOM05D006149 ORTHO05D007341 5.2e-73 278.1 194 93.3
C07p08530 Brassica napus HOM05D006149 ORTHO05D007341 5.2e-73 278.1 194 93.3
BolC7t41265H Brassica oleracea HOM05D006149 ORTHO05D007341 5.2e-73 278.1 194 93.3
Thhalv10022867m.g Eutrema salsugineum HOM05D006149 ORTHO05D007341 3.1e-70 268.9 194 86.1
Sp3g28510 Schrenkiella parvula HOM05D006149 ORTHO05D007341 3.1e-70 268.9 194 83.5
BcaB03g16271 Brassica carinata HOM05D006149 ORTHO05D007341 1.0e-68 263.8 194 90.7
AL3G46990 Arabidopsis lyrata HOM05D006149 ORTHO05D007341 7.2e-59 231.1 194 82.0
A07p05350 Brassica napus HOM05D006149 ORTHO05D007341 3.0e-57 225.7 196 82.1
BraA07t28328Z Brassica rapa HOM05D006149 ORTHO05D007341 3.0e-57 225.7 196 82.1
AT2G15270 Arabidopsis thaliana HOM05D006149 ORTHO05D007341 2.0e-56 223.0 196 81.6
Carub.0003s2910 Capsella rubella HOM05D006149 ORTHO05D007341 3.4e-56 222.2 123 96.7
CARHR105640 Cardamine hirsuta HOM05D006149 ORTHO05D007341 1.7e-55 219.9 125 94.4
BcaB08g34585 Brassica carinata HOM05D006149 ORTHO05D007341 7.7e-53 211.1 128 88.3
Aa31LG8G13110 Aethionema arabicum HOM05D006149 ORTHO05D007341 3.7e-47 192.2 135 80.0
THA.LOC104807242 Tarenaya hassleriana HOM05D006149 ORTHO05D007341 8.9e-41 171.0 128 71.9
Gohir.A03G186300 Gossypium hirsutum HOM05D006149 ORTHO05D007341 4.6e-37 158.7 128 67.2
TWI32G0763 Tripterygium wilfordii HOM05D006149 ORTHO05D007341 6.0e-37 158.3 129 65.9
PGR142G0815 Punica granatum HOM05D006149 ORTHO05D007341 1.0e-36 157.5 130 65.4
COL.COLO4_32597 Corchorus olitorius HOM05D006149 ORTHO05D007341 1.3e-36 157.1 128 66.4
Ciclev10029393m.g Citrus clementina HOM05D006149 ORTHO05D007341 1.7e-36 156.8 126 67.5
Gohir.D02G207100 Gossypium hirsutum HOM05D006149 ORTHO05D007341 1.7e-36 156.8 127 66.9
Gorai.005G235000 Gossypium raimondii HOM05D006149 ORTHO05D007341 1.7e-36 156.8 127 66.9
Sabra09G0073900 Salix brachista HOM05D006149 ORTHO05D007341 2.3e-36 156.4 129 67.4
Thecc.02G107700 Theobroma cacao HOM05D006149 ORTHO05D007341 3.9e-36 155.6 128 66.4
Potri.001G300300 Populus trichocarpa HOM05D006149 ORTHO05D007341 8.6e-36 154.5 126 69.0
VMungo0720G1566 Vigna mungo HOM05D006149 ORTHO05D007341 1.1e-35 154.1 128 64.8
Ca_11076_v3 Cicer arietinum L. HOM05D006149 ORTHO05D007341 1.5e-35 153.7 128 64.1
Phvul.007G040000 Phaseolus vulgaris HOM05D006149 ORTHO05D007341 1.5e-35 153.7 128 64.8
Cfa004575 Carpinus fangiana HOM05D006149 ORTHO05D007341 2.5e-35 152.9 101 75.2
TWI34G0529 Tripterygium wilfordii HOM05D006149 ORTHO05D007341 2.5e-35 152.9 130 63.8
Cpa.g.sc76.22 Carica papaya HOM05D006149 ORTHO05D007341 3.3e-35 152.5 135 63.7
Medtr1g107435 Medicago truncatula HOM05D006149 ORTHO05D007341 3.3e-35 152.5 128 64.1
CANSAT25G3711 Cannabis sativa HOM05D006149 ORTHO05D007341 4.3e-35 152.1 127 62.2
Glyma.20G128800 Glycine max HOM05D006149 ORTHO05D007341 5.6e-35 151.8 128 64.8
MD05G1089500 Malus domestica HOM05D006149 ORTHO05D007341 7.3e-35 151.4 132 62.1
Duzib052G0317 Durio zibethinus HOM05D006149 ORTHO05D007341 1.2e-34 150.6 128 64.1
Lalb_Chr21g0308351 Lupinus albus HOM05D006149 ORTHO05D007341 1.6e-34 150.2 123 63.4
RcHm_v2.0_Chr6g0255351 Rosa chinensis HOM05D006149 ORTHO05D007341 1.6e-34 150.2 127 66.9
Sc08g0001390 Simmondsia chinensis HOM05D006149 ORTHO05D007341 2.8e-34 149.4 134 64.9
Psat6g219120 Pisum sativum HOM05D006149 ORTHO05D007341 4.7e-34 148.7 125 64.0
Dinv15763 Davidia involucrata HOM05D006149 ORTHO05D007341 6.2e-34 148.3 130 61.5
Dinv42191 Davidia involucrata HOM05D006149 ORTHO05D007341 8.1e-34 147.9 129 62.8
arahy.Tifrunner.gnm1.ann1.0F7AFP Arachis hypogaea HOM05D006149 ORTHO05D007341 1.1e-33 147.5 129 62.8
Manes.10G076500 Manihot esculenta HOM05D006149 ORTHO05D007341 1.4e-33 147.1 125 64.0
Glyma.10G262200 Glycine max HOM05D006149 ORTHO05D007341 1.8e-33 146.7 125 63.2
Lj5g0003815 Lotus japonicus HOM05D006149 ORTHO05D007341 2.3e-33 146.4 128 62.5
arahy.Tifrunner.gnm1.ann1.GUMB1Z Arachis hypogaea HOM05D006149 ORTHO05D007341 3.1e-33 146.0 129 62.0
Hund06318 Selenicereus undatus HOM05D006149 ORTHO05D007341 3.1e-33 146.0 134 59.7
MELO3C019546.2 Cucumis melo HOM05D006149 ORTHO05D007341 4.0e-33 145.6 128 64.8
CsaV3_3G018210 Cucumis sativus L. HOM05D006149 ORTHO05D007341 4.0e-33 145.6 128 63.3
Lsat_1_v5_gn_9_111221 Lactuca sativa HOM05D006149 ORTHO05D007341 6.8e-33 144.8 131 58.8
Sed0001717 Sechium edule HOM05D006149 ORTHO05D007341 6.8e-33 144.8 128 64.8
HanXRQChr03g0070291 Helianthus annuus HOM05D006149 ORTHO05D007341 1.2e-32 144.1 133 57.9
Nn4g25119 Nelumbo nucifera HOM05D006149 ORTHO05D007341 1.2e-32 144.1 124 62.1
CAN.G1231.7 Capsicum annuum HOM05D006149 ORTHO05D007341 1.5e-32 143.7 115 65.2
FAN20G0990 Fragaria x ananassa HOM05D006149 ORTHO05D007341 1.5e-32 143.7 91 79.1
HPP92_004777 Vanilla planifolia HOM05D006149 ORTHO05D007341 2.0e-32 143.3 126 63.5
Nitab4.5_0002815g0010 Nicotiana tabacum HOM05D006149 ORTHO05D007341 2.6e-32 142.9 115 67.8
Rhsim05G0088300 Rhododendron simsii HOM05D006149 ORTHO05D007341 2.6e-32 142.9 131 59.5
Nn1g04703 Nelumbo nucifera HOM05D006149 ORTHO05D007341 3.4e-32 142.5 130 63.1
Lj9A321G81 Lonicera japonica HOM05D006149 ORTHO05D007341 4.4e-32 142.1 127 58.3
Sopen01g049800 Solanum pennellii HOM05D006149 ORTHO05D007341 4.4e-32 142.1 114 66.7
PGSC0003DMG400025768 Solanum tuberosum HOM05D006149 ORTHO05D007341 4.4e-32 142.1 114 66.7
Solyc01g107610.4 Solanum lycopersicum HOM05D006149 ORTHO05D007341 5.8e-32 141.7 114 66.7
ATR0618G054 Amborella trichopoda HOM05D006149 ORTHO05D007341 7.5e-32 141.4 129 60.5
Eucgr.E02957 Eucalyptus grandis HOM05D006149 ORTHO05D007341 7.5e-32 141.4 126 61.9
Nitab4.5_0005392g0090 Nicotiana tabacum HOM05D006149 ORTHO05D007341 9.8e-32 141.0 115 67.0
Peaxi162Scf00016g02334 Petunia axillaris HOM05D006149 ORTHO05D007341 9.8e-32 141.0 124 64.5
CSS0036049 Camellia sinensis var. sinensis HOM05D006149 ORTHO05D007341 1.3e-31 140.6 127 61.4
SHI05287 Sapria himalayana HOM05D006149 ORTHO05D007341 1.7e-31 140.2 128 62.5
Actinidia27971 Actinidia chinensis HOM05D006149 ORTHO05D007341 2.9e-31 139.4 128 60.9
FAN27G1351 Fragaria x ananassa HOM05D000289 ORTHO05D007341 2.9e-31 139.4 86 80.2
ECA240G2462 Erigeron canadensis HOM05D006149 ORTHO05D007341 3.7e-31 139.0 127 58.3
Prupe.8G134800 Prunus persica HOM05D006149 ORTHO05D007341 3.7e-31 139.0 113 67.3
AUR62039082 Chenopodium quinoa HOM05D006149 ORTHO05D007341 4.9e-31 138.7 132 59.8
SGA_v2.0_scaffold225G43080 Striga asiatica HOM05D006149 ORTHO05D007341 4.9e-31 138.7 119 61.3
unitig_22.g5723 Utricularia gibba HOM05D006149 ORTHO05D007341 4.9e-31 138.7 172 58.7
ClCG05G010280 Citrullus lanatus HOM05D006149 ORTHO05D007341 6.4e-31 138.3 124 63.7
FvH4_2g05220 Fragaria vesca HOM05D006149 ORTHO05D007341 6.4e-31 138.3 125 60.0
FAN15G1894 Fragaria x ananassa HOM05D006149 ORTHO05D007341 6.4e-31 138.3 125 60.0
FAN24G0478 Fragaria x ananassa HOM05D000289 ORTHO05D007341 6.4e-31 138.3 125 60.0
CDE02G2507 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 1.1e-30 137.5 127 59.8
SalBow6G4084 Salvia bowleyana HOM05D006149 ORTHO05D007341 1.1e-30 137.5 130 59.2
vmacro19450 Vaccinium macrocarpon HOM05D006149 ORTHO05D007341 1.4e-30 137.1 131 58.8
CDE02G4185 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 1.9e-30 136.7 127 59.8
Os09g0104300 Oryza sativa ssp. japonica HOM05D006149 ORTHO05D007341 2.4e-30 136.3 81 85.2
THA.LOC104819555 Tarenaya hassleriana HOM05D006149 ORTHO05D007341 3.2e-30 136.0 185 63.2
TAR628G0594 Trochodendron aralioides HOM05D006149 ORTHO05D007341 3.2e-30 136.0 120 60.0
PSO675G5876 Papaver somniferum HOM05D006149 ORTHO05D007341 5.4e-30 135.2 130 57.7
MD05G1088900 Malus domestica HOM05D006149 ORTHO05D007341 7.1e-30 134.8 181 47.0
Sed0008540 Sechium edule HOM05D006149 ORTHO05D007341 7.1e-30 134.8 125 62.4
PSO541G1364 Papaver somniferum HOM05D006149 ORTHO05D007341 9.2e-30 134.4 129 58.9
Migut.B00388 Erythranthe guttata HOM05D006149 ORTHO05D007341 1.6e-29 133.7 142 61.3
Pp3c2_21780 Physcomitrium patens HOM05D006149 ORTHO05D007341 2.1e-29 133.3 140 55.7
MSTRG.16714 Avicennia marina HOM05D006149 ORTHO05D007341 4.6e-29 132.1 131 58.0
Oeu017469.1 Olea europaea HOM05D006149 ORTHO05D007341 4.6e-29 132.1 119 59.7
Zm00001eb020500 Zea mays HOM05D006149 ORTHO05D007341 4.6e-29 132.1 76 88.2
CiPaw.05G011400 Carya illinoinensis HOM05D006149 ORTHO05D007341 7.8e-29 131.3 116 61.2
Zm00001eb393310 Zea mays HOM05D006149 ORTHO05D007341 1.3e-28 130.6 77 85.7
QL11p033743 Quercus lobata HOM05D006149 ORTHO05D007341 1.7e-28 130.2 201 49.8
Sabra16G0188500 Salix brachista HOM05D006149 ORTHO05D007341 3.0e-28 129.4 168 48.8
Aqoxy3G02908 Aquilegia oxysepala HOM05D006149 ORTHO05D007341 1.5e-27 127.1 132 57.6
CDE04G1609 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 1.5e-27 127.1 126 58.7
SMO364G0740 Selaginella moellendorffii HOM05D006149 ORTHO05D007341 1.6e-26 123.6 127 53.5
AagrBONN_evm.TU.Sc2ySwM_228.2976 Anthoceros agrestis HOM05D006149 ORTHO05D007341 4.7e-26 122.1 80 75.0
Duzib248G1531 Durio zibethinus HOM05D006149 ORTHO05D007341 1.8e-25 120.2 128 58.6
Rhsim11G0160200 Rhododendron simsii HOM05D006149 ORTHO05D007341 3.1e-25 119.4 181 43.1
SEGI_00829 Sequoiadendron giganteum HOM05D006149 ORTHO05D007341 3.1e-25 119.4 89 68.5
AUR62010304 Chenopodium quinoa HOM05D006149 ORTHO05D007341 6.8e-25 118.2 110 59.1
Pp3c1_15220 Physcomitrium patens HOM05D006149 ORTHO05D007341 6.8e-25 118.2 94 70.2
HanXRQChr02g0033021 Helianthus annuus HOM05D006149 ORTHO05D007341 2.0e-24 116.7 116 56.0
vmacro02004 Vaccinium macrocarpon HOM05D006149 ORTHO05D007341 2.0e-24 116.7 147 49.0
CANSAT25G0333 Cannabis sativa HOM05D006149 ORTHO05D007341 3.8e-23 112.5 115 53.9
Mapoly0056s0071 Marchantia polymorpha HOM05D006149 ORTHO05D007341 1.4e-22 110.5 119 55.5
DCAR_001643 Daucus carota HOM05D006149 ORTHO05D007341 7.8e-21 104.8 76 69.7
CBR_g44544 Chara braunii HOM05D006149 ORTHO05D007341 1.9e-19 100.1 106 55.7
PGR042G0697 Punica granatum HOM05D006149 ORTHO05D007341 9.6e-19 97.8 88 60.2
Ciclev10006213m.g Citrus clementina HOM05D006149 ORTHO05D007341 1.6e-18 97.1 111 49.5
EL10Ac9g22279 Beta vulgaris HOM05D006149 ORTHO05D007341 1.4e-17 94.0 136 42.6
Haze_10168 Corylus avellana HOM05D006149 ORTHO05D007341 2.0e-16 90.1 226 31.4
CSS0028016 Camellia sinensis var. sinensis HOM05D006149 ORTHO05D007341 5.8e-16 88.6 89 57.3
Actinidia05494 Actinidia chinensis HOM05D006149 ORTHO05D007341 2.2e-15 86.7 88 56.8
Cre03.g193150 Chlamydomonas reinhardtii HOM05D006149 ORTHO05D007341 3.5e-13 79.3 82 53.7
MBI12_g27878_MAGBIO Magnolia biondii HOM05D006149 ORTHO05D007341 1.1e-11 74.3 94 52.1
SMO197G0096 Selaginella moellendorffii HOM05D024641 ORTHO05D007341 7.3e-11 71.6 84 48.8
TAR376G0787 Trochodendron aralioides HOM05D006149 ORTHO05D007341 6.2e-10 68.6 77 51.9
MCO08G345 Micromonas commoda HOM05D006149 ORTHO05D007341 1.2e-08 64.3 67 49.3
QL11p033903 Quercus lobata HOM05D006149 ORTHO05D007341 5.8e-08 62.0 86 60.5
Ah.01g018230 Amaranthus hybridus HOM05D006149 ORTHO05D007341 7.6e-08 61.6 50 60.0
Lsat_1_v5_gn_5_63380 Lactuca sativa HOM05D000113 ORTHO05D012184 1.4e-06 57.4 48 62.5


User provided reference genes

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