Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36034 Brassica carinata HOM05D003477 ORTHO05D004043 5.3e-37 157.5 102 100.0
Sp3g28420 Schrenkiella parvula HOM05D003477 ORTHO05D004043 5.2e-32 141.0 102 88.2
CARHR105430 Cardamine hirsuta HOM05D003477 ORTHO05D004043 8.8e-32 140.2 102 72.5
AL3G46800 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 2.0e-31 139.0 102 87.3
AT2G15000 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 5.7e-31 137.5 102 86.3
BcaC01g03075 Brassica carinata HOM05D003477 ORTHO05D004043 9.8e-31 136.7 102 76.5
C03p56260 Brassica napus HOM05D003477 ORTHO05D004043 9.8e-31 136.7 102 76.5
BolC3t17914H Brassica oleracea HOM05D003477 ORTHO05D004043 9.8e-31 136.7 102 76.5
A03p45360 Brassica napus HOM05D003477 ORTHO05D004043 2.2e-30 135.6 102 70.6
BraA03t13668Z Brassica rapa HOM05D003477 ORTHO05D004043 2.2e-30 135.6 102 70.6
Aa31LG8G13000 Aethionema arabicum HOM05D003477 ORTHO05D004043 3.7e-30 134.8 102 84.3
A07p05410 Brassica napus HOM05D003477 ORTHO05D004043 3.1e-29 131.7 91 97.8
C07p08710 Brassica napus HOM05D003477 ORTHO05D004043 3.1e-29 131.7 91 97.8
BolC7t41282H Brassica oleracea HOM05D003477 ORTHO05D004043 3.1e-29 131.7 91 97.8
BraA07t28337Z Brassica rapa HOM05D003477 ORTHO05D004043 3.1e-29 131.7 91 97.8
BcaB08g34577 Brassica carinata HOM05D003477 ORTHO05D004043 6.5e-27 124.0 93 88.2
Thhalv10022939m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 4.2e-26 121.3 94 71.3
Carub.0003s2895 Capsella rubella HOM05D003477 ORTHO05D004043 4.0e-24 114.8 93 67.7
Aa31LG2G16840 Aethionema arabicum HOM05D003477 ORTHO05D004043 5.2e-24 114.4 102 60.8
BcaC01g03076 Brassica carinata HOM05D003477 ORTHO05D004043 1.3e-22 109.8 61 88.5
A01p04150 Brassica napus HOM05D003477 ORTHO05D004043 1.7e-22 109.4 102 74.5
BraA01t00404Z Brassica rapa HOM05D003477 ORTHO05D004043 1.7e-22 109.4 102 74.5
C01p04520 Brassica napus HOM05D003477 ORTHO05D004043 2.2e-22 109.0 102 74.5
BolC1t00438H Brassica oleracea HOM05D003477 ORTHO05D004043 4.9e-22 107.8 102 72.5
BcaNung04163 Brassica carinata HOM05D003477 ORTHO05D004043 4.5e-20 101.3 103 73.8
Cpa.g.sc106.115 Carica papaya HOM05D003477 ORTHO05D004043 1.1e-18 96.7 92 73.9
Duzib052G0507 Durio zibethinus HOM05D003477 ORTHO05D004043 2.5e-18 95.5 104 55.8
Gorai.005G234400 Gossypium raimondii HOM05D003477 ORTHO05D004043 3.3e-18 95.1 103 54.4
AT4G34265 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 1.2e-17 93.2 94 70.2
Carub.0007s0610 Capsella rubella HOM05D003477 ORTHO05D004043 1.0e-16 90.1 92 58.7
Gorai.008G021900 Gossypium raimondii HOM05D003477 ORTHO05D004043 1.0e-16 90.1 104 52.9
AL7G17010 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 2.3e-16 89.0 93 73.1
ClCG02G006540 Citrullus lanatus HOM05D003477 ORTHO05D004043 4.0e-16 88.2 102 49.0
Thhalv10026653m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 4.0e-16 88.2 94 74.5
MELO3C018498.2 Cucumis melo HOM05D003477 ORTHO05D004043 5.2e-16 87.8 102 51.0
Sed0009886 Sechium edule HOM05D003477 ORTHO05D004043 6.8e-16 87.4 102 48.0
ClCG05G010360 Citrullus lanatus HOM05D003477 ORTHO05D004043 8.9e-16 87.0 104 49.0
Duzib248G0529 Durio zibethinus HOM05D003477 ORTHO05D004043 8.9e-16 87.0 102 51.0
CiPaw.05G013300 Carya illinoinensis HOM05D003477 ORTHO05D004043 2.0e-15 85.9 104 50.0
PGSC0003DMG400025859 Solanum tuberosum HOM05D003477 ORTHO05D004043 2.6e-15 85.5 103 50.5
Prupe.8G137400 Prunus persica HOM05D003477 ORTHO05D004043 3.4e-15 85.1 102 52.0
QL11p032673 Quercus lobata HOM05D003477 ORTHO05D004043 3.4e-15 85.1 101 50.5
Sabra09G0072000 Salix brachista HOM05D003477 ORTHO05D004043 3.4e-15 85.1 103 58.3
CARHR242520 Cardamine hirsuta HOM05D003477 ORTHO05D004043 4.4e-15 84.7 93 71.0
Sabra16G0187400 Salix brachista HOM05D003477 ORTHO05D004043 5.8e-15 84.3 103 56.3
SGA_v2.0_scaffold32G13034 Striga asiatica HOM05D003477 ORTHO05D004043 7.5e-15 84.0 103 50.5
CAN.G606.19 Capsicum annuum HOM05D003477 ORTHO05D004043 9.8e-15 83.6 60 68.3
Dinv15774 Davidia involucrata HOM05D003477 ORTHO05D004043 9.8e-15 83.6 102 48.0
Migut.B00399 Erythranthe guttata HOM05D003477 ORTHO05D004043 2.2e-14 82.4 102 48.0
vmacro19455 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 2.9e-14 82.0 106 50.9
CANSAT25G3186 Cannabis sativa HOM05D003477 ORTHO05D004043 8.3e-14 80.5 102 50.0
Manes.07G066700 Manihot esculenta HOM05D003477 ORTHO05D004043 8.3e-14 80.5 95 51.6
Sp7g32050 Schrenkiella parvula HOM05D003477 ORTHO05D004043 1.1e-13 80.1 93 72.0
BcaNung04987 Brassica carinata HOM05D003477 ORTHO05D004043 1.8e-13 79.3 102 48.0
SGA_v2.0_scaffold225G42992 Striga asiatica HOM05D003477 ORTHO05D004043 2.4e-13 79.0 105 46.7
Duzib132G0501 Durio zibethinus HOM05D003477 ORTHO05D004043 3.2e-13 78.6 94 53.2
VMungo0720G2427 Vigna mungo HOM05D003477 ORTHO05D004043 3.2e-13 78.6 105 48.6
MBI04_g11440_MAGBIO Magnolia biondii HOM05D003477 ORTHO05D004043 4.1e-13 78.2 59 69.5
Actinidia00402 Actinidia chinensis HOM05D003477 ORTHO05D004043 5.4e-13 77.8 102 48.0
arahy.Tifrunner.gnm1.ann1.K085P0 Arachis hypogaea HOM05D003477 ORTHO05D004043 5.4e-13 77.8 103 47.6
Gohir.D02G206836 Gossypium hirsutum HOM05D003477 ORTHO05D004043 5.4e-13 77.8 94 51.1
Manes.10G075200 Manihot esculenta HOM05D003477 ORTHO05D004043 5.4e-13 77.8 95 49.5
Thecc.02G111100 Theobroma cacao HOM05D003477 ORTHO05D004043 7.0e-13 77.4 94 51.1
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 7.0e-13 77.4 102 51.0
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 7.0e-13 77.4 103 49.5
AUR62003947 Chenopodium quinoa HOM05D003477 ORTHO05D004043 1.2e-12 76.6 104 47.1
AUR62038261 Chenopodium quinoa HOM05D003477 ORTHO05D004043 1.2e-12 76.6 104 47.1
Lj5g0009419 Lotus japonicus HOM05D003477 ORTHO05D004043 1.6e-12 76.3 103 47.6
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 1.6e-12 76.3 104 48.1
FAN27G0803 Fragaria x ananassa HOM05D003477 ORTHO05D004043 2.0e-12 75.9 102 48.0
Gohir.A03G185500 Gossypium hirsutum HOM05D003477 ORTHO05D004043 2.7e-12 75.5 94 50.0
SalBow3G1026 Salvia bowleyana HOM05D003477 ORTHO05D004043 2.7e-12 75.5 106 48.1
TWI79G1417 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 2.7e-12 75.5 94 50.0
Gohir.D12G021600 Gossypium hirsutum HOM05D003477 ORTHO05D004043 3.5e-12 75.1 94 50.0
Potri.009G093400 Populus trichocarpa HOM05D003477 ORTHO05D004043 3.5e-12 75.1 94 57.4
Aqoxy6G02834 Aquilegia oxysepala HOM05D003477 ORTHO05D004043 4.6e-12 74.7 108 45.4
arahy.Tifrunner.gnm1.ann1.S3TCSS Arachis hypogaea HOM05D003477 ORTHO05D004043 4.6e-12 74.7 103 46.6
CDE01G0745 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 6.0e-12 74.3 50 70.0
Potri.001G298800 Populus trichocarpa HOM05D003477 ORTHO05D004043 6.0e-12 74.3 94 50.0
Gohir.A12G021300 Gossypium hirsutum HOM05D003477 ORTHO05D004043 7.8e-12 73.9 94 50.0
SalBow6G1705 Salvia bowleyana HOM05D003477 ORTHO05D004043 7.8e-12 73.9 106 45.3
FvH4_2g04800 Fragaria vesca HOM05D003477 ORTHO05D004043 1.0e-11 73.6 102 48.0
CDE02G3617 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 1.3e-11 73.2 102 46.1
FAN15G1392 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.3e-11 73.2 100 47.0
FAN20G0459 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.3e-11 73.2 102 48.0
Sed0021400 Sechium edule HOM05D003477 ORTHO05D004043 1.3e-11 73.2 93 46.2
CsaV3_7G008070 Cucumis sativus L. HOM05D010572 ORTHO05D012753 1.7e-11 72.8 97 46.4
FAN24G0602 Fragaria x ananassa HOM05D003477 ORTHO05D004043 2.3e-11 72.4 102 48.0
arahy.Tifrunner.gnm1.ann1.VE84TY Arachis hypogaea HOM05D003477 ORTHO05D004043 5.0e-11 71.2 94 46.8
Medtr1g107085 Medicago truncatula HOM05D003477 ORTHO05D004043 5.0e-11 71.2 100 44.0
Psat6g216680 Pisum sativum HOM05D003477 ORTHO05D004043 5.0e-11 71.2 100 43.0
PSO210G4486 Papaver somniferum HOM05D003477 ORTHO05D004043 6.6e-11 70.9 97 50.5
Ciclev10029666m.g Citrus clementina HOM05D003477 ORTHO05D004043 1.1e-10 70.1 102 44.1
DCAR_001659 Daucus carota HOM05D003477 ORTHO05D004043 1.1e-10 70.1 102 43.1
Atru.chr5.2447 Acer truncatum HOM05D003477 ORTHO05D004043 1.5e-10 69.7 102 44.1
vmacro01991 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 1.5e-10 69.7 104 50.0
DCAR_029094 Daucus carota HOM05D003477 ORTHO05D004043 3.3e-10 68.6 102 46.1
Nn5g30458 Nelumbo nucifera HOM05D003477 ORTHO05D004043 3.3e-10 68.6 95 50.5
Oeu013760.1 Olea europaea HOM05D003477 ORTHO05D004043 3.3e-10 68.6 102 45.1
Sed0015852 Sechium edule HOM05D003477 ORTHO05D004043 3.3e-10 68.6 93 46.2
Hund16371 Selenicereus undatus HOM05D003477 ORTHO05D004043 4.3e-10 68.2 110 42.7
Solyc01g107450.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 4.3e-10 68.2 93 47.3
Sopen01g049690 Solanum pennellii HOM05D003477 ORTHO05D004043 4.3e-10 68.2 93 47.3
Lsat_1_v5_gn_9_111940 Lactuca sativa HOM05D003477 ORTHO05D004043 5.6e-10 67.8 102 42.2
RcHm_v2.0_Chr2g0107061 Rosa chinensis HOM05D003477 ORTHO05D004043 7.3e-10 67.4 95 42.1
MELO3C031999.2 Cucumis melo HOM05D003477 ORTHO05D013069 9.5e-10 67.0 58 56.9
Phvul.002G014500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 9.5e-10 67.0 95 47.4
Duzib248G0862 Durio zibethinus HOM05D003477 ORTHO05D004043 1.6e-09 66.2 93 46.2
arahy.Tifrunner.gnm1.ann1.T63M72 Arachis hypogaea HOM05D003477 ORTHO05D004043 2.1e-09 65.9 90 46.7
Nitab4.5_0001439g0010 Nicotiana tabacum HOM05D003477 ORTHO05D004043 2.1e-09 65.9 61 55.7
PSO675G8803 Papaver somniferum HOM05D003477 ORTHO05D004043 2.8e-09 65.5 94 46.8
Psat2g169360 Pisum sativum HOM05D003477 ORTHO05D004043 2.8e-09 65.5 93 45.2
Nitab4.5_0001119g0150 Nicotiana tabacum HOM05D003477 ORTHO05D004043 4.7e-09 64.7 61 55.7
DCAR_025766 Daucus carota HOM05D003477 ORTHO05D004043 6.2e-09 64.3 92 42.4
Sopen02g037390 Solanum pennellii HOM05D003477 ORTHO05D004043 6.2e-09 64.3 61 54.1
FvH4_1g16960 Fragaria vesca HOM05D003477 ORTHO05D004043 8.0e-09 63.9 95 42.1
PGSC0003DMG400024979 Solanum tuberosum HOM05D003477 ORTHO05D004043 8.0e-09 63.9 61 54.1
ATR0315G039 Amborella trichopoda HOM05D003477 ORTHO05D004043 1.1e-08 63.5 103 42.7
Solyc02g092830.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 1.1e-08 63.5 60 53.3
CsaV3_3G018130 Cucumis sativus L. HOM05D003477 ORTHO05D004043 1.8e-08 62.8 95 43.2
Nn1g04659 Nelumbo nucifera HOM05D003477 ORTHO05D004043 1.8e-08 62.8 93 44.1
PSO541G5514 Papaver somniferum HOM05D003477 ORTHO05D004043 1.8e-08 62.8 94 44.7
MD02G1179900 Malus domestica HOM05D003477 ORTHO05D004043 2.3e-08 62.4 95 38.9
Oeu029533.3 Olea europaea HOM05D003477 ORTHO05D004043 2.3e-08 62.4 60 56.7
FAN23G2670 Fragaria x ananassa HOM05D003477 ORTHO05D004043 3.1e-08 62.0 51 58.8
FAN28G0243 Fragaria x ananassa HOM05D003477 ORTHO05D004043 3.1e-08 62.0 95 41.1
Prupe.6G226300 Prunus persica HOM05D003477 ORTHO05D004043 3.1e-08 62.0 94 40.4
Rhsim05G0089200 Rhododendron simsii HOM05D003477 ORTHO05D004043 3.1e-08 62.0 91 48.4
Atru.chr3.235 Acer truncatum HOM05D003477 ORTHO05D004043 5.2e-08 61.2 91 44.0
Ca_24733_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 5.2e-08 61.2 93 44.1
Lalb_Chr02g0145231 Lupinus albus HOM05D003477 ORTHO05D004043 5.2e-08 61.2 89 46.1
Peaxi162Scf00945g00014 Petunia axillaris HOM05D003477 ORTHO05D004043 5.2e-08 61.2 61 52.5
MD10G1099700 Malus domestica HOM05D003477 ORTHO05D004043 6.8e-08 60.8 92 44.6
TAR381G0852 Trochodendron aralioides HOM05D003477 ORTHO05D004043 8.9e-08 60.5 92 42.4
CSS0020585 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 1.2e-07 60.1 93 39.8
FAN19G2238 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.2e-07 60.1 92 42.4
FAN26G2600 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.5e-07 59.7 92 41.3
Cc07_g06600 Coffea canephora HOM05D003477 ORTHO05D004043 2.0e-07 59.3 109 43.1
Lj2g0006602 Lotus japonicus HOM05D003477 ORTHO05D004043 2.0e-07 59.3 88 43.2
EL10Ac6g15680 Beta vulgaris HOM05D003477 ORTHO05D004043 2.6e-07 58.9 95 41.1
Cfa004605 Carpinus fangiana HOM05D003477 ORTHO05D004043 2.6e-07 58.9 50 60.0
Haze_10200 Corylus avellana HOM05D003477 ORTHO05D004043 2.6e-07 58.9 50 60.0
Lalb_Chr21g0308261 Lupinus albus HOM05D003477 ORTHO05D004043 2.6e-07 58.9 88 40.9
GSVIVG01037899001 Vitis vinifera HOM05D003477 ORTHO05D004043 2.6e-07 58.9 50 58.0
Eucgr.H02262 Eucalyptus grandis HOM05D003477 ORTHO05D004043 3.4e-07 58.5 87 37.9
Phvul.007G041500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 3.4e-07 58.5 95 41.1
Cc02_g19410 Coffea canephora HOM05D003477 ORTHO05D004043 4.4e-07 58.2 51 58.8
Dinv26882 Davidia involucrata HOM05D003477 ORTHO05D004043 4.4e-07 58.2 93 45.2
Actinidia34393 Actinidia chinensis HOM05D003477 ORTHO05D004043 5.8e-07 57.8 93 43.0
Medtr5g016330 Medicago truncatula HOM05D003477 ORTHO05D004043 5.8e-07 57.8 90 42.2
Sc08g0001310 Simmondsia chinensis HOM05D003477 ORTHO05D004043 5.8e-07 57.8 96 61.5
ECA238G3264 Erigeron canadensis HOM05D003477 ORTHO05D004043 7.5e-07 57.4 97 44.3
Dinv42204 Davidia involucrata HOM05D003477 ORTHO05D004043 9.8e-07 57.0 92 45.7
QL06p040030 Quercus lobata HOM05D003477 ORTHO05D004043 9.8e-07 57.0 40 60.0
Ciclev10027007m.g Citrus clementina HOM05D003477 ORTHO05D004043 1.7e-06 56.2 92 40.2
Actinidia16453 Actinidia chinensis HOM05D003477 ORTHO05D004043 2.2e-06 55.8 95 41.1
Actinidia21247 Actinidia chinensis HOM05D003477 ORTHO05D004043 2.2e-06 55.8 95 41.1
Glyma.01G190500 Glycine max HOM05D003477 ORTHO05D004043 2.2e-06 55.8 93 40.9
Hma1.2p1_1023F.1_g249010 Hydrangea macrophylla HOM05D003477 ORTHO05D004043 2.2e-06 55.8 92 43.5
Nitab4.5_0003699g0030 Nicotiana tabacum HOM05D003477 ORTHO05D004043 2.2e-06 55.8 92 41.3
Hund06306 Selenicereus undatus HOM05D003477 ORTHO05D004043 2.2e-06 55.8 49 57.1
VMungo1215G1682 Vigna mungo HOM05D002634 ORTHO05D003100 2.2e-06 55.8 40 65.0
Eucgr.I01090 Eucalyptus grandis HOM05D003477 ORTHO05D004043 2.9e-06 55.5 98 39.8
PSO675G3465 Papaver somniferum HOM05D003477 ORTHO05D004043 2.9e-06 55.5 93 40.9
TPR.G19065 Trifolium pratense HOM05D003477 ORTHO05D004043 2.9e-06 55.5 49 61.2
Ca_11060_v3 Cicer arietinum L. HOM05D003477 ORTHO05D004043 3.7e-06 55.1 95 41.1
Sc16g0001450 Simmondsia chinensis HOM05D003477 ORTHO05D004043 3.7e-06 55.1 95 40.0
Lalb_Chr05g0226121 Lupinus albus HOM05D003477 ORTHO05D004043 4.9e-06 54.7 90 41.1
Cfa004078 Carpinus fangiana HOM05D003477 ORTHO05D004043 8.3e-06 53.9 51 49.0
RcHm_v2.0_Chr6g0254531 Rosa chinensis HOM05D003477 ORTHO05D004043 8.3e-06 53.9 93 44.1


User provided reference genes

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