Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35949 Brassica carinata HOM05D006080 ORTHO05D007382 1.9e-133 480.3 536 100.0
C07p09380 Brassica napus HOM05D006080 ORTHO05D007382 1.8e-131 473.8 536 99.6
BolC7t41361H Brassica oleracea HOM05D006080 ORTHO05D007382 1.8e-131 473.8 536 99.6
A07p06330 Brassica napus HOM05D006080 ORTHO05D007382 4.5e-127 459.1 536 98.3
BcaB06g26878 Brassica carinata HOM05D006080 ORTHO05D007382 1.2e-122 444.5 536 96.1
BraA07t28425Z Brassica rapa HOM05D006080 ORTHO05D007382 2.6e-122 443.4 536 97.0
Thhalv10002477m.g Eutrema salsugineum HOM05D006080 ORTHO05D007382 2.1e-108 397.1 536 90.5
Sp3g24500 Schrenkiella parvula HOM05D006080 ORTHO05D007382 1.0e-107 394.8 541 90.8
AT2G06000 Arabidopsis thaliana HOM05D006080 ORTHO05D007382 1.3e-102 377.9 213 85.0
AL3G43560 Arabidopsis lyrata HOM05D006080 ORTHO05D007382 1.5e-101 374.4 213 84.0
Carub.0003s2711 Capsella rubella HOM05D006080 ORTHO05D007382 1.6e-100 370.9 214 82.2
CARHR103620 Cardamine hirsuta HOM05D006080 ORTHO05D007382 1.3e-97 361.3 214 80.8
Aa31sc481G20 Aethionema arabicum HOM05D006080 ORTHO05D007382 5.2e-91 339.3 307 70.7
THA.LOC104815335 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 5.4e-88 329.3 210 71.9
THA.LOC104808885 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 1.1e-80 305.1 211 70.1
Thecc.09G076600 Theobroma cacao HOM05D006080 ORTHO05D007382 4.0e-43 180.3 213 45.5
MD02G1091700 Malus domestica HOM05D006080 ORTHO05D007382 3.8e-41 173.7 199 45.7
Sabra06G0110900 Salix brachista HOM05D006080 ORTHO05D007382 1.1e-40 172.2 206 46.1
Gorai.013G224200 Gossypium raimondii HOM05D006080 ORTHO05D007382 3.2e-40 170.6 197 46.7
MD15G1217800 Malus domestica HOM05D006080 ORTHO05D007382 5.5e-40 169.9 201 45.3
Potri.006G141800 Populus trichocarpa HOM05D006080 ORTHO05D007382 9.3e-40 169.1 205 45.9
Duzib187G1039 Durio zibethinus HOM05D006080 ORTHO05D007382 1.2e-39 168.7 198 46.0
Manes.09G158700 Manihot esculenta HOM05D006080 ORTHO05D007382 1.2e-39 168.7 195 48.2
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 2.1e-39 167.9 196 45.9
Gohir.A13G190700 Gossypium hirsutum HOM05D006080 ORTHO05D007382 2.3e-38 164.5 197 45.7
QL02p058222 Quercus lobata HOM05D006080 ORTHO05D007382 2.3e-38 164.5 207 46.9
QL93p0100_0628 Quercus lobata HOM05D006080 ORTHO05D007382 2.3e-38 164.5 207 46.9
Sed0020593 Sechium edule HOM05D006080 ORTHO05D007382 3.9e-38 163.7 184 46.2
COL.COLO4_18095 Corchorus olitorius HOM05D006080 ORTHO05D007382 1.1e-37 162.2 202 46.0
Lj4g0003679 Lotus japonicus HOM05D006080 ORTHO05D007382 3.3e-37 160.6 178 46.6
Prupe.7G198600 Prunus persica HOM05D006080 ORTHO05D007382 3.3e-37 160.6 198 44.9
Gorai.009G035900 Gossypium raimondii HOM05D006080 ORTHO05D007382 5.7e-37 159.8 213 41.3
CiPaw.03G206100 Carya illinoinensis HOM05D006080 ORTHO05D007382 1.3e-36 158.7 195 44.6
Duzib168G1192 Durio zibethinus HOM05D006080 ORTHO05D007382 2.2e-36 157.9 213 41.8
VMungo1215G0155 Vigna mungo HOM05D006080 ORTHO05D007382 8.2e-36 156.0 183 42.1
Phvul.009G114250 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 5.3e-35 153.3 178 43.8
FAN04G2899 Fragaria x ananassa HOM05D006080 ORTHO05D007382 1.2e-34 152.1 191 45.0
arahy.Tifrunner.gnm1.ann1.YW7MJY Arachis hypogaea HOM05D006080 ORTHO05D007382 5.9e-34 149.8 204 39.7
Lalb_Chr07g0181201 Lupinus albus HOM05D006080 ORTHO05D007382 6.5e-33 146.4 184 42.4
Phvul.011G177400 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 8.5e-33 146.0 210 40.5
TPR.G30187 Trifolium pratense HOM05D006080 ORTHO05D007382 1.1e-32 145.6 214 40.7
Glyma.17G049100 Glycine max HOM05D006080 ORTHO05D007382 1.9e-32 144.8 203 39.9
Nn7g36733 Nelumbo nucifera HOM05D006080 ORTHO05D007382 1.9e-32 144.8 185 42.7
PGR142G0728 Punica granatum HOM05D006080 ORTHO05D007382 4.2e-32 143.7 206 41.7
Cfa002986 Carpinus fangiana HOM05D006080 ORTHO05D007382 5.5e-32 143.3 133 53.4
Cpa.g.sc28.32 Carica papaya HOM05D006080 ORTHO05D007382 7.2e-32 142.9 146 49.3
Lalb_Chr23g0276361 Lupinus albus HOM05D006080 ORTHO05D007382 7.2e-32 142.9 180 43.9
Haze_26015 Corylus avellana HOM05D006080 ORTHO05D007382 1.6e-31 141.7 144 50.7
Aqoxy5G04299 Aquilegia oxysepala HOM05D006080 ORTHO05D007382 2.1e-31 141.4 216 39.4
AUR62003304 Chenopodium quinoa HOM05D006080 ORTHO05D007382 2.1e-31 141.4 208 40.9
AUR62044025 Chenopodium quinoa HOM05D006080 ORTHO05D007382 2.1e-31 141.4 215 40.5
Dinv24252 Davidia involucrata HOM05D006080 ORTHO05D007382 6.1e-31 139.8 219 40.2
Rhsim04G0100300 Rhododendron simsii HOM05D006080 ORTHO05D007382 7.9e-31 139.4 184 46.2
Phvul.009G021500 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 1.0e-30 139.0 178 44.4
Rhsim12G0001600 Rhododendron simsii HOM05D006080 ORTHO05D007382 1.4e-30 138.7 185 44.3
SHI30075 Sapria himalayana HOM05D006080 ORTHO05D007382 1.4e-30 138.7 210 38.6
TWI14G1385 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 1.4e-30 138.7 201 40.8
Ah.07g204920 Amaranthus hybridus HOM05D002607 ORTHO05D008816 1.8e-30 138.3 229 38.0
Ciclev10007804m.g Citrus clementina HOM05D006080 ORTHO05D007382 2.3e-30 137.9 205 38.5
CSS0013189 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 5.1e-30 136.7 186 46.2
CSS0013911 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 5.1e-30 136.7 186 46.2
CANSAT56G0731 Cannabis sativa HOM05D006080 ORTHO05D007382 6.7e-30 136.3 141 48.9
Sc14g0000540 Simmondsia chinensis HOM05D006080 ORTHO05D007382 8.8e-30 136.0 177 43.5
Hund19654 Selenicereus undatus HOM05D006080 ORTHO05D007382 2.5e-29 134.4 186 41.9
CsaV3_2G001150 Cucumis sativus L. HOM05D006080 ORTHO05D007382 4.3e-29 133.7 139 48.2
vmacro00920 Vaccinium macrocarpon HOM05D006080 ORTHO05D007382 4.3e-29 133.7 185 44.9
FvH4_5g31880 Fragaria vesca HOM05D006080 ORTHO05D007382 7.4e-29 132.9 136 49.3
Sc08g0008900 Simmondsia chinensis HOM05D006080 ORTHO05D007382 1.7e-28 131.7 209 39.2
arahy.Tifrunner.gnm1.ann1.3R1N4J Arachis hypogaea HOM05D006080 ORTHO05D007382 2.2e-28 131.3 183 39.9
Glyma.04G019000 Glycine max HOM05D006080 ORTHO05D007382 2.8e-28 131.0 177 42.9
VMungo1309G1452 Vigna mungo HOM05D006080 ORTHO05D007382 3.7e-28 130.6 178 42.1
FAN18G2998 Fragaria x ananassa HOM05D006080 ORTHO05D007382 6.3e-28 129.8 136 48.5
Glyma.06G019300 Glycine max HOM05D006080 ORTHO05D007382 8.2e-28 129.4 178 44.4
Oeu000645.1 Olea europaea HOM05D006080 ORTHO05D007382 1.1e-27 129.0 195 39.5
CSS0008787 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 3.1e-27 127.5 189 45.0
ClCG11G001430 Citrullus lanatus HOM05D006080 ORTHO05D007382 3.1e-27 127.5 132 47.7
MELO3C004654.2 Cucumis melo HOM05D006080 ORTHO05D007382 3.1e-27 127.5 136 47.8
FAN08G1188 Fragaria x ananassa HOM05D006080 ORTHO05D007382 4.1e-27 127.1 137 46.7
MSTRG.16549 Avicennia marina HOM05D006080 ORTHO05D007382 9.1e-27 125.9 190 40.0
RcHm_v2.0_Chr7g0227901 Rosa chinensis HOM05D006080 ORTHO05D007382 9.1e-27 125.9 134 46.3
Lj9C313T10 Lonicera japonica HOM05D006080 ORTHO05D007382 1.0e-25 122.5 215 36.7
DCAR_029235 Daucus carota HOM05D006080 ORTHO05D007382 1.7e-25 121.7 227 35.2
Lj6g0017816 Lotus japonicus HOM05D006080 ORTHO05D007382 2.9e-25 120.9 179 41.3
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 3.8e-25 120.6 179 39.1
TWI59G0376 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 3.8e-25 120.6 136 45.6
Migut.B00654 Erythranthe guttata HOM05D006080 ORTHO05D007382 6.5e-25 119.8 188 40.4
Medtr2g041700 Medicago truncatula HOM05D006080 ORTHO05D007382 1.1e-24 119.0 182 40.1
Medtr4g040410 Medicago truncatula HOM05D006080 ORTHO05D007382 4.2e-24 117.1 167 39.5
AUR62016281 Chenopodium quinoa HOM05D006080 ORTHO05D007382 5.5e-24 116.7 154 42.9
HanXRQChr05g0146121 Helianthus annuus HOM05D006080 ORTHO05D007382 7.2e-24 116.3 187 39.0
TPR.G27762 Trifolium pratense HOM05D006080 ORTHO05D007382 1.2e-23 115.5 179 38.5
Psat1g133120 Pisum sativum HOM05D006080 ORTHO05D007382 1.6e-23 115.2 179 38.0
SalBow5G4726 Salvia bowleyana HOM05D006080 ORTHO05D007382 2.1e-23 114.8 224 35.3
MBI19_g16224_MAGBIO Magnolia biondii HOM05D006080 ORTHO05D007382 4.7e-23 113.6 178 38.2
SGA_v2.0_scaffold332G48925 Striga asiatica HOM05D006080 ORTHO05D007382 6.1e-23 113.2 186 39.2
SalBow5G2015 Salvia bowleyana HOM05D006080 ORTHO05D007382 7.9e-23 112.8 224 35.3
Atru.BG.18.p Acer truncatum HOM05D006080 ORTHO05D007382 1.8e-22 111.7 91 57.1
Lsat_1_v5_gn_2_12120 Lactuca sativa HOM05D006080 ORTHO05D007382 2.3e-22 111.3 188 34.6
TAR383G0956 Trochodendron aralioides HOM05D006080 ORTHO05D007382 8.8e-22 109.4 132 40.9
HanXRQChr10g0292001 Helianthus annuus HOM05D006080 ORTHO05D007382 1.3e-20 105.5 181 38.1
CAN.G1702.1 Capsicum annuum HOM05D006080 ORTHO05D007382 4.8e-20 103.6 195 34.4
Actinidia00227 Actinidia chinensis HOM05D006080 ORTHO05D007382 6.9e-19 99.8 136 44.9
SalBow6G5833 Salvia bowleyana HOM05D006080 ORTHO05D007382 5.9e-18 96.7 222 32.4
SalBow6G3562 Salvia bowleyana HOM05D006080 ORTHO05D007382 7.7e-18 96.3 222 32.4
Ca_02204_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 1.0e-17 95.9 193 35.2
Solyc01g104630.3 Solanum lycopersicum HOM05D006080 ORTHO05D007382 1.7e-17 95.1 190 34.2
Sopen01g047140 Solanum pennellii HOM05D006080 ORTHO05D007382 1.7e-17 95.1 190 34.2
PGSC0003DMG401029758 Solanum tuberosum HOM05D006080 ORTHO05D007382 2.2e-17 94.7 190 33.7
Cc02_g22120 Coffea canephora HOM05D006080 ORTHO05D007382 2.9e-17 94.4 163 35.6
ATR0598G196 Amborella trichopoda HOM05D006080 ORTHO05D007382 3.8e-17 94.0 168 35.7
Nitab4.5_0000249g0340 Nicotiana tabacum HOM05D006080 ORTHO05D007382 1.9e-16 91.7 191 34.6
Eucgr.C00814 Eucalyptus grandis HOM05D006080 ORTHO05D007382 4.2e-16 90.5 108 44.4
CDE06G1744 Ceratophyllum demersum HOM05D000591 ORTHO05D000579 2.7e-15 87.8 177 35.0
ECA238G3807 Erigeron canadensis HOM05D006080 ORTHO05D007382 4.7e-15 87.0 156 37.2
Nitab4.5_0009570g0010 Nicotiana tabacum HOM05D006080 ORTHO05D007382 1.8e-14 85.1 191 31.9
Gohir.D13G196370 Gossypium hirsutum HOM05D006080 ORTHO05D007382 1.4e-11 75.5 99 43.4
Duzib138G0398 Durio zibethinus HOM05D006232 ORTHO05D007746 6.7e-06 56.6 138 34.8


User provided reference genes

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