Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35910 Brassica carinata HOM05D007448 ORTHO05D009392 2.4e-60 235.3 121 100.0
BolC7t41418H Brassica oleracea HOM05D007448 ORTHO05D009392 1.6e-59 232.6 121 99.2
A07p06520 Brassica napus HOM05D007448 ORTHO05D009392 1.2e-46 189.9 104 97.1
BraA07t28447Z Brassica rapa HOM05D007448 ORTHO05D009392 3.5e-43 178.3 98 96.9
Sp3g23710 Schrenkiella parvula HOM05D007448 ORTHO05D009392 2.3e-31 139.0 77 94.8
Thhalv10021866m.g Eutrema salsugineum HOM05D007448 ORTHO05D009392 2.0e-30 136.0 77 92.2
Carub.0003s1319 Capsella rubella HOM05D007448 ORTHO05D009392 2.6e-30 135.6 77 93.5
BcaB06g26831 Brassica carinata HOM05D007448 ORTHO05D009392 3.4e-30 135.2 77 94.8
AT3G13677 Arabidopsis thaliana HOM05D007448 ORTHO05D009392 1.3e-29 133.3 77 90.9
AL3G25660 Arabidopsis lyrata HOM05D007448 ORTHO05D009392 4.9e-29 131.3 77 88.3
Aa31LG8G850 Aethionema arabicum HOM05D007448 ORTHO05D009392 4.6e-27 124.8 77 83.1
THA.LOC104822630 Tarenaya hassleriana HOM05D007448 ORTHO05D009392 6.6e-26 120.9 79 77.2
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 8.0e-24 114.0 58 100.0
Nn1g03921 Nelumbo nucifera HOM05D007448 ORTHO05D009392 2.1e-16 89.4 96 52.1
Manes.03G111700 Manihot esculenta HOM05D007448 ORTHO05D009392 1.4e-15 86.7 67 62.7
TWI39G0054 Tripterygium wilfordii HOM05D007448 ORTHO05D009392 1.8e-15 86.3 73 58.9
PGR083G2019 Punica granatum HOM05D007448 ORTHO05D009392 2.3e-15 85.9 69 58.0
Migut.M00875 Erythranthe guttata HOM05D007448 ORTHO05D009392 4.0e-15 85.1 69 63.8
Hma1.2p1_1003F.1_g246780 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 5.2e-15 84.7 71 59.2
Hma1.2p1_1488F.1_g286625 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 5.2e-15 84.7 71 59.2
Eucgr.F01082 Eucalyptus grandis HOM05D007448 ORTHO05D009392 6.8e-15 84.3 68 58.8
ClCG11G018440 Citrullus lanatus HOM05D007448 ORTHO05D009392 1.2e-14 83.6 66 66.7
Ciclev10010683m.g Citrus clementina HOM05D007448 ORTHO05D009392 1.2e-14 83.6 78 59.0
Cpa.g.sc80.111 Carica papaya HOM05D007448 ORTHO05D009392 2.6e-14 82.4 67 61.2
Ciclev10010083m.g Citrus clementina HOM05D007448 ORTHO05D009392 2.6e-14 82.4 69 62.3
MD03G1219500 Malus domestica HOM05D007448 ORTHO05D009392 2.6e-14 82.4 67 62.7
Phvul.011G154800 Phaseolus vulgaris HOM05D007448 ORTHO05D009392 3.4e-14 82.0 64 65.6
CsaV3_3G044380 Cucumis sativus L. HOM05D007448 ORTHO05D009392 4.4e-14 81.6 66 63.6
Thecc.07G071800 Theobroma cacao HOM05D007448 ORTHO05D009392 4.4e-14 81.6 67 61.2
Sed0026843 Sechium edule HOM05D007448 ORTHO05D009392 5.8e-14 81.3 66 63.6
Atru.chr4.846 Acer truncatum HOM05D007448 ORTHO05D009392 7.5e-14 80.9 76 50.0
Sabra16G0269700 Salix brachista HOM05D007448 ORTHO05D009392 9.8e-14 80.5 66 56.1
FvH4_3g20900 Fragaria vesca HOM05D007448 ORTHO05D009392 1.3e-13 80.1 66 62.1
FAN25G3793 Fragaria x ananassa HOM05D007448 ORTHO05D009392 1.3e-13 80.1 66 62.1
Gohir.D13G148600 Gossypium hirsutum HOM05D007448 ORTHO05D009392 1.3e-13 80.1 67 59.7
Prupe.4G189600 Prunus persica HOM05D007448 ORTHO05D009392 1.3e-13 80.1 66 62.1
Gohir.A13G143800 Gossypium hirsutum HOM05D007448 ORTHO05D009392 1.7e-13 79.7 66 60.6
Gorai.013G166400 Gossypium raimondii HOM05D007448 ORTHO05D009392 2.9e-13 79.0 67 59.7
Potri.001G406200 Populus trichocarpa HOM05D007448 ORTHO05D009392 2.9e-13 79.0 67 56.7
Duzib213G0053 Durio zibethinus HOM05D007448 ORTHO05D009392 3.7e-13 78.6 76 57.9
Nitab4.5_0000639g0040 Nicotiana tabacum HOM05D007448 ORTHO05D009392 3.7e-13 78.6 63 61.9
FAN21G3287 Fragaria x ananassa HOM05D007448 ORTHO05D009392 4.9e-13 78.2 66 60.6
Glyma.06G253900 Glycine max HOM05D007448 ORTHO05D009392 4.9e-13 78.2 68 58.8
RcHm_v2.0_Chr5g0035321 Rosa chinensis HOM05D007448 ORTHO05D009392 4.9e-13 78.2 67 58.2
TPR.G23252 Trifolium pratense HOM05D007448 ORTHO05D009392 6.4e-13 77.8 61 65.6
Cc06_g05250 Coffea canephora HOM05D007448 ORTHO05D009392 8.3e-13 77.4 66 62.1
MELO3C018199.2 Cucumis melo HOM05D003028 ORTHO05D003465 8.3e-13 77.4 61 65.6
Medtr7g057740 Medicago truncatula HOM05D007448 ORTHO05D009392 1.1e-12 77.0 61 62.3
Psat3g145520 Pisum sativum HOM05D007448 ORTHO05D009392 1.1e-12 77.0 61 65.6
unitig_899.g15312 Utricularia gibba HOM05D007448 ORTHO05D009392 1.1e-12 77.0 67 59.7
GSVIVG01014426001 Vitis vinifera HOM05D007448 ORTHO05D009392 1.1e-12 77.0 67 58.2
CiPaw.11G176100 Carya illinoinensis HOM05D007448 ORTHO05D009392 1.4e-12 76.6 64 59.4
HanXRQChr08g0234641 Helianthus annuus HOM05D007448 ORTHO05D009392 1.4e-12 76.6 64 60.9
Lsat_1_v5_gn_5_6900 Lactuca sativa HOM05D007448 ORTHO05D009392 1.9e-12 76.3 64 60.9
Sopen12g006840 Solanum pennellii HOM05D007448 ORTHO05D009392 1.9e-12 76.3 63 61.9
PGSC0003DMG400008573 Solanum tuberosum HOM05D007448 ORTHO05D009392 1.9e-12 76.3 63 61.9
Actinidia18748 Actinidia chinensis HOM05D007448 ORTHO05D009392 2.4e-12 75.9 55 63.6
Solyc12g013500.2 Solanum lycopersicum HOM05D007448 ORTHO05D009392 3.2e-12 75.5 63 60.3
Cfa020508 Carpinus fangiana HOM05D007448 ORTHO05D009392 5.4e-12 74.7 63 60.3
arahy.Tifrunner.gnm1.ann1.UX5IA9 Arachis hypogaea HOM05D007448 ORTHO05D009392 7.1e-12 74.3 68 55.9
Nitab4.5_0008360g0010 Nicotiana tabacum HOM05D007448 ORTHO05D009392 7.1e-12 74.3 62 59.7
Sc03g0009610 Simmondsia chinensis HOM05D007448 ORTHO05D009392 7.1e-12 74.3 70 55.7
Lj3g0013278 Lotus japonicus HOM05D007448 ORTHO05D009392 9.2e-12 73.9 61 59.0
arahy.Tifrunner.gnm1.ann1.GZ4R1Y Arachis hypogaea HOM05D007448 ORTHO05D009392 1.2e-11 73.6 68 54.4
DCAR_021403 Daucus carota HOM05D007448 ORTHO05D009392 1.2e-11 73.6 72 54.2
AUR62015605 Chenopodium quinoa HOM05D007448 ORTHO05D009392 2.1e-11 72.8 67 50.7
Oeu019361.1 Olea europaea HOM05D007448 ORTHO05D009392 2.1e-11 72.8 63 60.3
Peaxi162Scf00000g00504 Petunia axillaris HOM05D007448 ORTHO05D009392 2.1e-11 72.8 61 60.7
Rhsim04G0017500 Rhododendron simsii HOM05D007448 ORTHO05D009392 2.7e-11 72.4 59 59.3
CANSAT11G1525 Cannabis sativa HOM05D007448 ORTHO05D009392 4.6e-11 71.6 60 65.0
Gorai.007G085800 Gossypium raimondii HOM05D007448 ORTHO05D009392 4.6e-11 71.6 67 53.7
vmacro09556 Vaccinium macrocarpon HOM05D007448 ORTHO05D009392 6.0e-11 71.2 59 61.0
CDE02G3786 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 1.3e-10 70.1 66 54.5
Os03g0581650 Oryza sativa ssp. japonica HOM05D007448 ORTHO05D009392 1.3e-10 70.1 59 57.6
SalBow8G2366 Salvia bowleyana HOM05D007448 ORTHO05D009392 1.3e-10 70.1 57 59.6
TAR626G0388 Trochodendron aralioides HOM05D007448 ORTHO05D009392 2.3e-10 69.3 66 48.5
CSS0027029 Camellia sinensis var. sinensis HOM05D007448 ORTHO05D009392 3.0e-10 68.9 47 63.8
Gohir.A11G075500 Gossypium hirsutum HOM05D007448 ORTHO05D009392 3.9e-10 68.6 64 57.8
MSTRG.14378 Avicennia marina HOM05D007448 ORTHO05D009392 5.1e-10 68.2 82 42.7
PSO421G0428 Papaver somniferum HOM05D007448 ORTHO05D009392 1.5e-09 66.6 58 56.9
ECA246G0067 Erigeron canadensis HOM05D007448 ORTHO05D009392 5.6e-09 64.7 60 55.0
CDE05G1526 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 7.3e-09 64.3 66 51.5
Zm00001eb049080 Zea mays HOM05D007448 ORTHO05D009392 7.3e-09 64.3 59 54.2
Glyma.12G147500 Glycine max HOM05D007448 ORTHO05D009392 3.6e-08 62.0 50 58.0
Ah.06g183620 Amaranthus hybridus HOM05D007448 ORTHO05D009392 6.2e-08 61.2 64 46.9
AUR62035371 Chenopodium quinoa HOM05D007448 ORTHO05D009392 8.1e-08 60.8 76 43.4
Hund02207 Selenicereus undatus HOM05D007448 ORTHO05D009392 1.1e-07 60.5 54 53.7
EL10Ac4g09050 Beta vulgaris HOM05D007448 ORTHO05D009392 1.4e-07 60.1 60 46.7
Lalb_Chr03g0030401 Lupinus albus HOM05D007448 ORTHO05D009392 1.4e-07 60.1 64 46.9
QL08p018291 Quercus lobata HOM05D007448 ORTHO05D009392 1.4e-07 60.1 54 50.0
FAN11G2341 Fragaria x ananassa HOM05D007448 ORTHO05D009392 2.3e-07 59.3 47 57.4
AUR62035373 Chenopodium quinoa HOM05D007448 ORTHO05D009392 3.1e-07 58.9 57 47.4
AUR62029317 Chenopodium quinoa HOM05D007448 ORTHO05D009392 4.0e-07 58.5 67 44.8
Oeu006763.2 Olea europaea HOM05D007448 ORTHO05D009392 1.2e-06 57.0 47 55.3
CAN.G1320.10 Capsicum annuum HOM05D007448 ORTHO05D009392 1.5e-06 56.6 45 60.0
Aqoxy4G01379 Aquilegia oxysepala HOM05D007448 ORTHO05D009392 2.6e-06 55.8 67 47.8
Pp3c3_18440 Physcomitrium patens HOM05D007448 ORTHO05D009392 2.6e-06 55.8 59 49.2
Mapoly0162s0010 Marchantia polymorpha HOM05D007448 ORTHO05D009392 5.8e-06 54.7 87 41.4


User provided reference genes

Program Settings