Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35873 Brassica carinata HOM05D000300 ORTHO05D016697 2.2e-45 185.3 93 100.0
BcaC06g35874 Brassica carinata HOM05D000300 ORTHO05D016697 2.2e-45 185.3 93 100.0
BolC7t41466H Brassica oleracea HOM05D000300 ORTHO05D016697 2.9e-45 184.9 92 100.0
C07p10170 Brassica napus HOM05D038712 ORTHO05D016697 4.6e-43 177.6 93 95.7
C03p44850 Brassica napus HOM05D000300 ORTHO05D013472 2.4e-28 128.6 94 75.5
BolC3t16746H Brassica oleracea HOM05D000300 ORTHO05D013472 2.4e-28 128.6 94 75.5
BolC8t50380H Brassica oleracea HOM05D000300 ORTHO05D016697 1.2e-24 116.3 81 77.8
Carub.0003s1068 Capsella rubella HOM05D000300 ORTHO05D013472 2.2e-21 105.5 93 60.2
AT3G11380 Arabidopsis thaliana HOM05D000300 ORTHO05D013472 9.2e-20 100.1 89 61.8
AL3G22860 Arabidopsis lyrata HOM05D000300 ORTHO05D013472 4.6e-19 97.8 89 60.7
BcaC07g39603 Brassica carinata HOM05D000300 ORTHO05D016697 1.0e-18 96.7 66 78.8
BcaB04g18636 Brassica carinata HOM05D000300 ORTHO05D013472 1.3e-18 96.3 93 57.0
BcaC01g04126 Brassica carinata HOM05D000300 ORTHO05D013472 2.3e-18 95.5 93 55.9
A03p37020 Brassica napus HOM05D000300 ORTHO05D013472 2.3e-18 95.5 93 55.9
C03p44860 Brassica napus HOM05D000300 ORTHO05D013472 2.3e-18 95.5 93 55.9
BraA03t12864Z Brassica rapa HOM05D000300 ORTHO05D013472 2.3e-18 95.5 93 55.9
CARHR100860 Cardamine hirsuta HOM05D000300 ORTHO05D013472 7.3e-17 90.5 95 56.8
BcaC01g04127 Brassica carinata HOM05D000300 ORTHO05D013472 2.1e-16 89.0 67 74.6
AL3G40150 Arabidopsis lyrata HOM05D000300 ORTHO05D013472 3.6e-16 88.2 95 55.8
Thhalv10027393m.g Eutrema salsugineum HOM05D000300 ORTHO05D000383 4.7e-16 87.8 93 51.6
AL1G41540 Arabidopsis lyrata HOM05D000300 ORTHO05D017381 4.4e-14 81.3 93 48.4
AT1G28020 Arabidopsis thaliana HOM05D000300 ORTHO05D017381 1.7e-13 79.3 93 49.5
BcaC04g18808 Brassica carinata HOM05D000300 ORTHO05D016697 1.9e-12 75.9 53 77.4
BcaC05g26618 Brassica carinata HOM05D000300 ORTHO05D012934 1.9e-12 75.9 96 49.0
Thhalv10009907m.g Eutrema salsugineum HOM05D000300 ORTHO05D017381 1.9e-12 75.9 95 51.6
BraA09t39325Z Brassica rapa HOM05D000300 ORTHO05D017381 5.4e-12 74.3 96 47.9
BcaB04g18633 Brassica carinata HOM05D000300 ORTHO05D021402 7.1e-12 73.9 58 69.0
BolC1t01041H Brassica oleracea HOM05D000300 ORTHO05D000383 9.3e-12 73.6 93 45.2
BcaC01g04130 Brassica carinata HOM05D000300 ORTHO05D021402 1.2e-11 73.2 73 53.4
A01p09220 Brassica napus HOM05D000300 ORTHO05D000383 1.2e-11 73.2 93 44.1
C03p44820 Brassica napus HOM05D000300 ORTHO05D021402 1.2e-11 73.2 73 53.4
BraA01t00865Z Brassica rapa HOM05D000300 ORTHO05D000383 1.2e-11 73.2 93 44.1
CARHR027470 Cardamine hirsuta HOM05D000300 ORTHO05D012934 1.2e-11 73.2 95 48.4
BcaC04g23562 Brassica carinata HOM05D014735 ORTHO05D016697 1.6e-11 72.8 37 91.9
C01p10800 Brassica napus HOM05D000300 ORTHO05D000383 1.6e-11 72.8 93 45.2
BraA09t39326Z Brassica rapa HOM05D000300 ORTHO05D017381 2.7e-11 72.0 96 46.9
CARHR027480 Cardamine hirsuta HOM05D000300 ORTHO05D000383 3.5e-11 71.6 95 44.2
Thhalv10012206m.g Eutrema salsugineum HOM05D000300 ORTHO05D013472 7.8e-11 70.5 78 53.8
BcaC05g26617 Brassica carinata HOM05D000300 ORTHO05D017381 1.0e-10 70.1 96 45.8
C05p26670 Brassica napus HOM05D000300 ORTHO05D017381 1.0e-10 70.1 96 45.8
CARHR027450 Cardamine hirsuta HOM05D000300 ORTHO05D013482 6.6e-10 67.4 97 40.2
Thhalv10009763m.g Eutrema salsugineum HOM05D000300 ORTHO05D013482 1.5e-09 66.2 94 40.4
AT1G28000 Arabidopsis thaliana HOM05D000300 ORTHO05D013482 2.5e-09 65.5 97 41.2
BcaC05g26797 Brassica carinata HOM05D000300 ORTHO05D017381 2.5e-09 65.5 68 52.9
BcaNung01373 Brassica carinata HOM05D000300 ORTHO05D015941 4.3e-09 64.7 72 48.6
Carub.0001s2645 Capsella rubella HOM05D000300 ORTHO05D013482 7.3e-09 63.9 97 43.3
BcaC05g26612 Brassica carinata HOM05D000300 ORTHO05D013482 9.6e-09 63.5 97 39.2
C05p26630 Brassica napus HOM05D000300 ORTHO05D013482 9.6e-09 63.5 97 39.2
BraA09t39330Z Brassica rapa HOM05D000300 ORTHO05D013482 9.6e-09 63.5 97 40.2
AL7G37910 Arabidopsis lyrata HOM05D000300 ORTHO05D012934 1.6e-08 62.8 94 42.6
BcaC06g36388 Brassica carinata HOM05D014735 ORTHO05D019949 2.1e-08 62.4 42 73.8
BolC7t40865H Brassica oleracea HOM05D014735 ORTHO05D019949 2.1e-08 62.4 42 73.8
Sp3g33960 Schrenkiella parvula HOM05D000300 ORTHO05D000383 2.1e-08 62.4 95 40.0
A09p38150 Brassica napus HOM05D000300 ORTHO05D013482 2.8e-08 62.0 97 39.2
Thhalv10001972m.g Eutrema salsugineum HOM05D000300 ORTHO05D000383 2.8e-08 62.0 95 38.9
BcaB07g30898 Brassica carinata HOM05D000300 ORTHO05D012934 3.6e-08 61.6 65 50.8
BolC5t31382H Brassica oleracea HOM05D000300 ORTHO05D013482 4.8e-08 61.2 97 39.2
BcaC04g22782 Brassica carinata HOM05D000300 ORTHO05D000383 6.2e-08 60.8 95 40.0
BraA09t36941Z Brassica rapa HOM05D000300 ORTHO05D000383 8.1e-08 60.5 95 38.9
C09p15340 Brassica napus HOM05D000300 ORTHO05D000383 1.4e-07 59.7 95 38.9
BolC9t54442H Brassica oleracea HOM05D000300 ORTHO05D000383 1.4e-07 59.7 95 40.0
A09p12950 Brassica napus HOM05D000300 ORTHO05D000383 2.4e-07 58.9 97 38.1
BcaB07g31583 Brassica carinata HOM05D000300 ORTHO05D000383 9.0e-07 57.0 95 35.8
AT3G11350 Arabidopsis thaliana HOM05D000300 ORTHO05D013472 1.5e-06 56.2 56 55.4
Thecc.07G082300 Theobroma cacao HOM05D000300 ORTHO05D000383 2.6e-06 55.5 95 33.7
AL1G41500 Arabidopsis lyrata HOM05D000300 ORTHO05D015941 5.8e-06 54.3 92 34.8


User provided reference genes

Program Settings