Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35873 Brassica carinata HOM05D000300 ORTHO05D016697 2.8e-94 348.6 174 100.0
C07p10170 Brassica napus HOM05D038712 ORTHO05D016697 3.9e-88 328.2 169 96.4
BolC7t41466H Brassica oleracea HOM05D000300 ORTHO05D016697 2.4e-69 265.8 173 82.1
BcaC04g23562 Brassica carinata HOM05D014735 ORTHO05D016697 1.4e-56 223.4 113 95.6
BolC3t16746H Brassica oleracea HOM05D000300 ORTHO05D013472 6.5e-51 204.5 207 58.9
C03p44850 Brassica napus HOM05D000300 ORTHO05D013472 1.1e-50 203.8 207 58.9
BcaC06g35874 Brassica carinata HOM05D000300 ORTHO05D016697 7.0e-45 184.5 93 100.0
Carub.0003s1068 Capsella rubella HOM05D000300 ORTHO05D013472 2.8e-38 162.5 210 46.2
BcaC01g04127 Brassica carinata HOM05D000300 ORTHO05D013472 1.6e-36 156.8 175 56.6
BcaB04g18636 Brassica carinata HOM05D000300 ORTHO05D013472 6.5e-35 151.4 205 44.4
CARHR100860 Cardamine hirsuta HOM05D000300 ORTHO05D013472 4.2e-34 148.7 212 45.3
BcaC01g04126 Brassica carinata HOM05D000300 ORTHO05D013472 9.4e-34 147.5 205 43.9
C03p44860 Brassica napus HOM05D000300 ORTHO05D013472 9.4e-34 147.5 205 43.9
A03p37020 Brassica napus HOM05D000300 ORTHO05D013472 1.6e-33 146.7 205 43.9
BraA03t12864Z Brassica rapa HOM05D000300 ORTHO05D013472 1.6e-33 146.7 205 43.9
AL3G22860 Arabidopsis lyrata HOM05D000300 ORTHO05D013472 2.1e-33 146.4 200 46.5
AL3G40150 Arabidopsis lyrata HOM05D000300 ORTHO05D013472 2.1e-33 146.4 208 44.7
AT3G11380 Arabidopsis thaliana HOM05D000300 ORTHO05D013472 3.0e-32 142.5 200 45.5
AL1G41540 Arabidopsis lyrata HOM05D000300 ORTHO05D017381 7.7e-28 127.9 206 39.3
AT1G28020 Arabidopsis thaliana HOM05D000300 ORTHO05D017381 2.9e-27 125.9 206 39.8
Thhalv10027393m.g Eutrema salsugineum HOM05D000300 ORTHO05D000383 2.1e-25 119.8 206 37.4
BolC8t50380H Brassica oleracea HOM05D000300 ORTHO05D016697 2.3e-24 116.3 81 77.8
C03p44820 Brassica napus HOM05D000300 ORTHO05D021402 4.4e-23 112.1 162 44.4
Thhalv10009907m.g Eutrema salsugineum HOM05D000300 ORTHO05D017381 5.7e-23 111.7 207 38.2
BolC1t01041H Brassica oleracea HOM05D000300 ORTHO05D000383 1.7e-22 110.2 204 36.3
CARHR027480 Cardamine hirsuta HOM05D000300 ORTHO05D000383 1.7e-22 110.2 208 35.6
A01p09220 Brassica napus HOM05D000300 ORTHO05D000383 1.1e-21 107.5 204 35.3
BraA01t00865Z Brassica rapa HOM05D000300 ORTHO05D000383 1.1e-21 107.5 204 35.3
C01p10800 Brassica napus HOM05D000300 ORTHO05D000383 1.8e-21 106.7 204 35.3
AL7G37910 Arabidopsis lyrata HOM05D000300 ORTHO05D012934 5.4e-21 105.1 198 35.4
BcaC01g04130 Brassica carinata HOM05D000300 ORTHO05D021402 1.0e-19 100.9 203 36.5
BolC3t16745H Brassica oleracea HOM05D000300 ORTHO05D000383 1.7e-19 100.1 123 48.0
BraA09t39325Z Brassica rapa HOM05D000300 ORTHO05D017381 5.0e-19 98.6 199 34.2
BcaB07g30898 Brassica carinata HOM05D000300 ORTHO05D012934 8.6e-19 97.8 171 35.7
BraA09t39326Z Brassica rapa HOM05D000300 ORTHO05D017381 8.6e-19 97.8 199 33.7
BcaC07g39603 Brassica carinata HOM05D000300 ORTHO05D016697 1.9e-18 96.7 66 78.8
BcaC05g26617 Brassica carinata HOM05D000300 ORTHO05D017381 2.5e-18 96.3 199 33.7
C05p26670 Brassica napus HOM05D000300 ORTHO05D017381 2.5e-18 96.3 199 33.7
Thhalv10001237m.g Eutrema salsugineum HOM05D000300 ORTHO05D015941 2.5e-18 96.3 157 36.9
CARHR027450 Cardamine hirsuta HOM05D000300 ORTHO05D013482 3.3e-18 95.9 201 32.8
AT1G28000 Arabidopsis thaliana HOM05D000300 ORTHO05D013482 2.8e-17 92.8 201 33.3
Thhalv10012206m.g Eutrema salsugineum HOM05D000300 ORTHO05D013472 4.7e-17 92.0 151 43.7
BcaB04g18632 Brassica carinata HOM05D000300 ORTHO05D016697 2.3e-16 89.7 121 47.1
Carub.0001s2645 Capsella rubella HOM05D000300 ORTHO05D013482 2.3e-16 89.7 201 34.8
BcaB04g18627 Brassica carinata HOM05D000300 ORTHO05D013472 1.2e-15 87.4 74 58.1
BolC5t31390H Brassica oleracea HOM05D000300 ORTHO05D017381 1.2e-15 87.4 152 35.5
C05p26630 Brassica napus HOM05D000300 ORTHO05D013482 1.5e-15 87.0 201 31.3
BraA09t39330Z Brassica rapa HOM05D000300 ORTHO05D013482 2.6e-15 86.3 201 31.3
Thhalv10009763m.g Eutrema salsugineum HOM05D000300 ORTHO05D013482 2.6e-15 86.3 173 31.2
AT1G43010 Arabidopsis thaliana HOM05D000300 ORTHO05D013482 3.4e-15 85.9 204 32.8
A09p38150 Brassica napus HOM05D000300 ORTHO05D013482 7.5e-15 84.7 201 30.8
BolC5t31382H Brassica oleracea HOM05D000300 ORTHO05D013482 7.5e-15 84.7 201 31.3
CARHR035800 Cardamine hirsuta HOM05D000300 ORTHO05D015941 1.3e-14 84.0 143 37.1
AL1G54220 Arabidopsis lyrata HOM05D000300 ORTHO05D012934 2.2e-14 83.2 157 33.1
CARHR027470 Cardamine hirsuta HOM05D000300 ORTHO05D012934 2.2e-14 83.2 107 48.6
BcaC05g26618 Brassica carinata HOM05D000300 ORTHO05D012934 1.1e-13 80.9 108 47.2
Thhalv10027559m.g Eutrema salsugineum HOM05D000300 ORTHO05D013472 1.8e-13 80.1 132 40.2
AL1G54230 Arabidopsis lyrata HOM05D000300 ORTHO05D012934 3.2e-13 79.3 157 32.5
BcaC06g36388 Brassica carinata HOM05D014735 ORTHO05D019949 9.2e-13 77.8 62 69.4
BolC7t40865H Brassica oleracea HOM05D014735 ORTHO05D019949 9.2e-13 77.8 62 69.4
BcaNung01373 Brassica carinata HOM05D000300 ORTHO05D015941 1.6e-12 77.0 83 50.6
BcaC04g18808 Brassica carinata HOM05D000300 ORTHO05D016697 3.5e-12 75.9 53 77.4
BcaC05g26797 Brassica carinata HOM05D000300 ORTHO05D017381 6.0e-12 75.1 97 46.4
AT3G11350 Arabidopsis thaliana HOM05D000300 ORTHO05D013472 7.8e-12 74.7 139 38.1
BcaB04g18633 Brassica carinata HOM05D000300 ORTHO05D021402 1.3e-11 73.9 58 69.0
BraA09t39331Z Brassica rapa HOM05D000300 ORTHO05D013482 2.3e-11 73.2 203 30.5
Sp3g33960 Schrenkiella parvula HOM05D000300 ORTHO05D000383 6.6e-11 71.6 109 40.4
Thhalv10001972m.g Eutrema salsugineum HOM05D000300 ORTHO05D000383 8.6e-11 71.2 121 38.0
A09p38180 Brassica napus HOM05D000300 ORTHO05D013482 1.1e-10 70.9 173 30.6
BcaC04g22782 Brassica carinata HOM05D000300 ORTHO05D000383 9.5e-10 67.8 121 38.0
BraA09t36941Z Brassica rapa HOM05D000300 ORTHO05D000383 1.6e-09 67.0 121 37.2
Hund10803 Selenicereus undatus HOM05D000300 ORTHO05D000383 1.6e-09 67.0 183 28.4
C09p15340 Brassica napus HOM05D000300 ORTHO05D000383 2.1e-09 66.6 121 37.2
BolC9t54442H Brassica oleracea HOM05D000300 ORTHO05D000383 2.1e-09 66.6 121 38.0
BcaB07g31583 Brassica carinata HOM05D000300 ORTHO05D000383 3.6e-09 65.9 129 33.3
QL05p040005 Quercus lobata HOM05D000300 ORTHO05D000383 3.6e-09 65.9 174 26.4
QL12p006379 Quercus lobata HOM05D000300 ORTHO05D000383 3.6e-09 65.9 174 26.4
TWI63G0633 Tripterygium wilfordii HOM05D000300 ORTHO05D000383 3.6e-09 65.9 176 26.7
A09p12950 Brassica napus HOM05D000300 ORTHO05D000383 4.7e-09 65.5 123 36.6
Carub.0001s3674 Capsella rubella HOM05D000300 ORTHO05D012934 8.0e-09 64.7 158 29.7
BcaB04g18629 Brassica carinata HOM05D014735 ORTHO05D015941 1.1e-08 64.3 88 46.6
AL1G41500 Arabidopsis lyrata HOM05D000300 ORTHO05D015941 1.8e-08 63.5 104 36.5
GSVIVG01020533001 Vitis vinifera HOM05D000300 ORTHO05D000383 3.1e-08 62.8 88 35.2
BolC5t31381H Brassica oleracea HOM05D000300 ORTHO05D013482 6.8e-08 61.6 161 30.4
Carub.0001s0426 Capsella rubella HOM05D000300 ORTHO05D015941 6.8e-08 61.6 148 31.1
Prupe.3G136900 Prunus persica HOM05D000300 ORTHO05D000383 8.9e-08 61.2 91 37.4
MD05G1313800 Malus domestica HOM05D000300 ORTHO05D000383 1.2e-07 60.8 175 25.1
Prupe.8G026200 Prunus persica HOM05D000300 ORTHO05D000383 1.2e-07 60.8 78 44.9
Duzib268G1868 Durio zibethinus HOM05D000300 ORTHO05D000383 1.5e-07 60.5 112 32.1
Thecc.07G082300 Theobroma cacao HOM05D000300 ORTHO05D000383 1.5e-07 60.5 105 34.3
arahy.Tifrunner.gnm1.ann1.KF0AV4 Arachis hypogaea HOM05D000300 ORTHO05D000383 2.0e-07 60.1 176 24.4
COL.COLO4_31487 Corchorus olitorius HOM05D000300 ORTHO05D000383 3.4e-07 59.3 175 23.4
Dinv23647 Davidia involucrata HOM05D000300 ORTHO05D000383 3.4e-07 59.3 183 29.0
Thecc.06G189100 Theobroma cacao HOM05D000300 ORTHO05D000383 3.4e-07 59.3 175 26.3
TAR626G1910 Trochodendron aralioides HOM05D000300 ORTHO05D000383 3.4e-07 59.3 176 24.4
Ah.09g237280 Amaranthus hybridus HOM05D000300 ORTHO05D000383 7.5e-07 58.2 175 26.9
CSS0011290 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 7.5e-07 58.2 176 25.6
CSS0029904 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 7.5e-07 58.2 176 25.6
Cfa000434 Carpinus fangiana HOM05D000300 ORTHO05D000383 7.5e-07 58.2 197 24.9
arahy.Tifrunner.gnm1.ann1.1V91HL Arachis hypogaea HOM05D000300 ORTHO05D000383 9.8e-07 57.8 176 23.9
Lj1A724G17 Lonicera japonica HOM05D000300 ORTHO05D000383 1.3e-06 57.4 85 41.2
Oeu050844.1 Olea europaea HOM05D000300 ORTHO05D000383 1.3e-06 57.4 198 25.3
Oeu050847.1 Olea europaea HOM05D000300 ORTHO05D000383 1.3e-06 57.4 198 25.3
CsaV3_1G012210 Cucumis sativus L. HOM05D000300 ORTHO05D000383 1.7e-06 57.0 112 30.4
Glyma.15G073300 Glycine max HOM05D000300 ORTHO05D000383 1.7e-06 57.0 175 24.0
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 1.7e-06 57.0 127 26.8
Gohir.A10G025300 Gossypium hirsutum HOM05D000300 ORTHO05D000383 2.2e-06 56.6 174 22.4
Gohir.D10G026000 Gossypium hirsutum HOM05D000300 ORTHO05D000383 2.2e-06 56.6 174 22.4
Gorai.011G027300 Gossypium raimondii HOM05D000300 ORTHO05D000383 2.2e-06 56.6 174 22.4
SalBow8G4674 Salvia bowleyana HOM05D000300 ORTHO05D000383 2.9e-06 56.2 107 32.7
TAR627G1084 Trochodendron aralioides HOM05D000300 ORTHO05D000383 2.9e-06 56.2 175 23.4
AUR62017000 Chenopodium quinoa HOM05D000300 ORTHO05D000383 4.9e-06 55.5 175 23.4
Dinv07553 Davidia involucrata HOM05D000300 ORTHO05D000383 4.9e-06 55.5 176 24.4
RcHm_v2.0_Chr6g0275941 Rosa chinensis HOM05D000300 ORTHO05D000383 4.9e-06 55.5 178 25.8
MBI18_g16993_MAGBIO Magnolia biondii HOM05D000300 ORTHO05D000383 6.4e-06 55.1 134 26.9
AUR62014808 Chenopodium quinoa HOM05D000300 ORTHO05D000383 8.3e-06 54.7 175 23.4
Ciclev10015002m.g Citrus clementina HOM05D000300 ORTHO05D000383 8.3e-06 54.7 175 25.1
Cc02_g13280 Coffea canephora HOM05D000300 ORTHO05D000383 8.3e-06 54.7 93 29.0
Lalb_Chr15g0089841 Lupinus albus HOM05D000300 ORTHO05D000383 8.3e-06 54.7 176 23.3
Thecc.07G081000 Theobroma cacao HOM05D000300 ORTHO05D000383 8.3e-06 54.7 78 38.5


User provided reference genes

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