Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35865 Brassica carinata HOM05D006836 ORTHO05D008691 7.6e-194 680.2 329 100.0
BolC7t41479H Brassica oleracea HOM05D006836 ORTHO05D008691 7.6e-194 680.2 329 100.0
C07p10290 Brassica napus HOM05D006836 ORTHO05D008691 4.6e-191 671.0 329 98.8
BraA07t28465Z Brassica rapa HOM05D006836 ORTHO05D008691 5.9e-186 654.1 329 96.7
A07p06710 Brassica napus HOM05D006836 ORTHO05D008691 3.0e-182 641.7 329 95.1
BcaB06g26781 Brassica carinata HOM05D006836 ORTHO05D008691 5.0e-177 624.4 330 93.6
Sp3g23200 Schrenkiella parvula HOM05D006836 ORTHO05D008691 3.6e-167 591.7 325 87.7
Thhalv10002607m.g Eutrema salsugineum HOM05D006836 ORTHO05D008691 1.0e-158 563.5 330 84.2
CARHR102220 Cardamine hirsuta HOM05D006836 ORTHO05D008691 7.2e-152 540.8 334 79.9
AL3G42030 Arabidopsis lyrata HOM05D006836 ORTHO05D008691 6.3e-148 527.7 335 80.3
Carub.0003s2604 Capsella rubella HOM05D006836 ORTHO05D008691 1.1e-147 526.9 333 78.4
THA.LOC104808842 Tarenaya hassleriana HOM05D006836 ORTHO05D008691 3.9e-121 438.7 334 66.2
Thecc.01G198300 Theobroma cacao HOM05D006836 ORTHO05D008691 5.6e-112 408.3 336 61.3
Gohir.D07G199300 Gossypium hirsutum HOM05D006836 ORTHO05D008691 1.6e-111 406.8 336 61.0
Gohir.A07G192900 Gossypium hirsutum HOM05D006836 ORTHO05D008691 8.1e-111 404.4 338 60.1
Gorai.001G223100 Gossypium raimondii HOM05D006836 ORTHO05D008691 9.0e-110 401.0 336 60.1
AT2G04360 Arabidopsis thaliana HOM05D006836 ORTHO05D008691 1.2e-109 400.6 273 75.8
GSVIVG01030118001 Vitis vinifera HOM05D006836 ORTHO05D008691 1.7e-108 396.7 333 58.6
Manes.13G060700 Manihot esculenta HOM05D006836 ORTHO05D008691 6.4e-108 394.8 334 60.2
Duzib133G0147 Durio zibethinus HOM05D006836 ORTHO05D008691 1.9e-107 393.3 338 58.6
QL04p067653 Quercus lobata HOM05D006836 ORTHO05D008691 5.4e-107 391.7 341 57.8
Lj6g0007987 Lotus japonicus HOM05D006836 ORTHO05D008691 3.5e-106 389.0 315 60.3
Dinv21313 Davidia involucrata HOM05D006836 ORTHO05D008691 1.3e-105 387.1 323 59.1
Cfa014210 Carpinus fangiana HOM05D006836 ORTHO05D008691 5.1e-105 385.2 364 54.9
Ciclev10015848m.g Citrus clementina HOM05D006836 ORTHO05D008691 1.5e-104 383.6 323 58.5
CiPaw.03G283000 Carya illinoinensis HOM05D006836 ORTHO05D008691 1.9e-104 383.3 345 55.1
Potri.014G169200 Populus trichocarpa HOM05D006836 ORTHO05D008691 4.3e-104 382.1 339 57.8
Rhsim06G0178100 Rhododendron simsii HOM05D006836 ORTHO05D008691 4.3e-104 382.1 347 57.9
Lalb_Chr10g0094621 Lupinus albus HOM05D006836 ORTHO05D008691 7.3e-104 381.3 330 56.7
RcHm_v2.0_Chr2g0155731 Rosa chinensis HOM05D006836 ORTHO05D008691 9.6e-104 380.9 340 56.2
CANSAT64G2876 Cannabis sativa HOM05D006836 ORTHO05D008691 1.3e-103 380.6 347 57.3
vmacro12068 Vaccinium macrocarpon HOM05D006836 ORTHO05D008691 4.8e-103 378.6 333 56.2
CSS0020520 Camellia sinensis var. sinensis HOM05D006836 ORTHO05D008691 5.3e-102 375.2 341 55.7
TWI75G1319 Tripterygium wilfordii HOM05D006836 ORTHO05D008691 9.0e-102 374.4 327 57.2
MD09G1129600 Malus domestica HOM05D006836 ORTHO05D008691 4.5e-101 372.1 326 55.5
TAR629G0496 Trochodendron aralioides HOM05D006836 ORTHO05D008691 9.9e-101 370.9 342 53.5
Eucgr.K01397 Eucalyptus grandis HOM05D006836 ORTHO05D008691 2.2e-100 369.8 334 56.0
Actinidia09801 Actinidia chinensis HOM05D006836 ORTHO05D008691 2.9e-100 369.4 332 56.9
Haze_12601 Corylus avellana HOM05D006836 ORTHO05D008691 1.9e-99 366.7 394 51.8
Hund15463 Selenicereus undatus HOM05D006836 ORTHO05D008691 2.4e-99 366.3 342 55.8
VMungo0647G0281 Vigna mungo HOM05D006836 ORTHO05D008691 2.4e-99 366.3 255 65.5
Phvul.L001691 Phaseolus vulgaris HOM05D006836 ORTHO05D008691 4.2e-99 365.5 303 58.7
MBI14_g24036_MAGBIO Magnolia biondii HOM05D006836 ORTHO05D008691 7.1e-99 364.8 322 55.9
TPR.G16170 Trifolium pratense HOM05D006836 ORTHO05D008691 9.3e-99 364.4 308 57.5
DCAR_012739 Daucus carota HOM05D006836 ORTHO05D008691 1.2e-98 364.0 345 55.4
arahy.Tifrunner.gnm1.ann1.M09JG2 Arachis hypogaea HOM05D006836 ORTHO05D008691 2.7e-98 362.8 328 54.6
Solyc07g045300.4 Solanum lycopersicum HOM05D006836 ORTHO05D008691 2.7e-98 362.8 344 54.9
PGR031G1777 Punica granatum HOM05D006836 ORTHO05D008691 3.5e-98 362.5 342 53.8
arahy.Tifrunner.gnm1.ann1.GSTV0Y Arachis hypogaea HOM05D006836 ORTHO05D008691 4.6e-98 362.1 324 56.5
Nitab4.5_0004852g0030 Nicotiana tabacum HOM05D006836 ORTHO05D008691 7.9e-98 361.3 237 69.2
Ca_16339_v3 Cicer arietinum L. HOM05D006836 ORTHO05D008691 1.3e-97 360.5 311 56.3
Aqoxy1G03080 Aquilegia oxysepala HOM05D006836 ORTHO05D008691 1.8e-97 360.1 261 63.6
Glyma.13G010200 Glycine max HOM05D006836 ORTHO05D008691 3.0e-97 359.4 322 54.7
ClCG02G009110 Citrullus lanatus HOM05D006836 ORTHO05D008691 3.9e-97 359.0 339 54.0
Nn1g07540 Nelumbo nucifera HOM05D006836 ORTHO05D008691 3.3e-96 355.9 348 53.7
PSO675G1370 Papaver somniferum HOM05D006836 ORTHO05D008691 2.8e-95 352.8 336 54.8
Psat5g104760 Pisum sativum HOM05D006836 ORTHO05D008691 3.7e-95 352.4 310 55.5
Sopen07g023830 Solanum pennellii HOM05D006836 ORTHO05D008691 3.7e-95 352.4 237 67.9
Glyma.20G060000 Glycine max HOM05D006836 ORTHO05D008691 8.1e-95 351.3 312 55.1
PSO541G5262 Papaver somniferum HOM05D006836 ORTHO05D008691 4.0e-94 349.0 268 60.8
Aa31sc202G50 Aethionema arabicum HOM05D006836 ORTHO05D008691 6.9e-94 348.2 285 63.5
PGSC0003DMG400017381 Solanum tuberosum HOM05D006836 ORTHO05D008691 9.0e-94 347.8 237 67.1
Oeu037218.2 Olea europaea HOM05D000879 ORTHO05D008691 5.8e-93 345.1 287 56.8
Sed0023251 Sechium edule HOM05D006836 ORTHO05D008691 5.8e-93 345.1 338 51.2
Sabra14G0129000 Salix brachista HOM05D006836 ORTHO05D008691 6.4e-92 341.7 426 45.3
Migut.M00056 Erythranthe guttata HOM05D006836 ORTHO05D008691 1.6e-90 337.0 351 53.6
Os08g0345400 Oryza sativa ssp. japonica HOM05D006836 ORTHO05D008691 2.1e-90 336.7 232 65.5
Zm00001eb176810 Zea mays HOM05D006836 ORTHO05D008691 2.1e-90 336.7 288 57.6
EL10Ac9g22661 Beta vulgaris HOM05D006836 ORTHO05D008691 2.7e-90 336.3 342 52.6
COL.COLO4_19642 Corchorus olitorius HOM05D006836 ORTHO05D008691 2.7e-90 336.3 340 52.1
MSTRG.14912 Avicennia marina HOM05D006836 ORTHO05D008691 3.5e-90 335.9 233 67.4
SGA_v2.0_scaffold73G24492 Striga asiatica HOM05D006836 ORTHO05D008691 4.6e-90 335.5 237 64.1
Medtr3g082680 Medicago truncatula HOM05D006836 ORTHO05D008691 7.9e-90 334.7 230 67.0
Nitab4.5_0005354g0030 Nicotiana tabacum HOM05D006836 ORTHO05D008691 7.9e-90 334.7 336 52.4
AUR62014994 Chenopodium quinoa HOM05D006836 ORTHO05D008691 1.8e-89 333.6 237 65.4
SEGI_40154 Sequoiadendron giganteum HOM05D006836 ORTHO05D008691 1.9e-88 330.1 256 58.6
FvH4_6g40480 Fragaria vesca HOM05D006836 ORTHO05D008691 1.6e-87 327.0 297 54.9
Ah.01g002500 Amaranthus hybridus HOM05D006836 ORTHO05D008691 3.1e-86 322.8 221 69.2
FAN10G4054 Fragaria x ananassa HOM05D006836 ORTHO05D008691 2.2e-84 316.6 363 48.5
FAN14G0130 Fragaria x ananassa HOM05D006836 ORTHO05D008691 2.2e-84 316.6 363 48.5
ATR0751G245 Amborella trichopoda HOM05D006836 ORTHO05D008691 2.9e-84 316.2 218 66.5
Lsat_1_v5_gn_7_97361 Lactuca sativa HOM05D006836 ORTHO05D008691 9.3e-83 311.2 335 46.9
Cc00_g01020 Coffea canephora HOM05D006836 ORTHO05D008691 2.7e-82 309.7 235 59.1
AUR62029127 Chenopodium quinoa HOM05D006836 ORTHO05D008691 3.5e-82 309.3 223 65.5
Peaxi162Scf00612g00142 Petunia axillaris HOM05D006836 ORTHO05D008691 4.3e-80 302.4 342 48.0
HanXRQChr11g0329431 Helianthus annuus HOM05D006836 ORTHO05D008691 1.4e-78 297.4 326 49.1
Lj8A137G50 Lonicera japonica HOM05D006836 ORTHO05D008691 1.5e-77 293.9 203 68.0
CsaV3_6G009720 Cucumis sativus L. HOM05D006836 ORTHO05D008691 1.1e-75 287.7 195 64.6
unitig_62.g23534 Utricularia gibba HOM05D000211 ORTHO05D002682 3.6e-74 282.7 313 47.0
ECA236G0162 Erigeron canadensis HOM05D006836 ORTHO05D008691 1.9e-72 276.9 199 63.3
Pp3c23_16310 Physcomitrium patens HOM05D006836 ORTHO05D008691 1.3e-71 274.2 225 56.0
Cpa.g.sc136.39 Carica papaya HOM05D006836 ORTHO05D008691 4.8e-71 272.3 339 46.6
CDE10G1136 Ceratophyllum demersum HOM05D006836 ORTHO05D008691 1.8e-70 270.4 174 70.7
MELO3C025942.2 Cucumis melo HOM05D006836 ORTHO05D008691 1.6e-66 257.3 282 49.3
Sc21g0000470 Simmondsia chinensis HOM05D006836 ORTHO05D008691 1.6e-66 257.3 277 50.2
AagrBONN_evm.TU.Sc2ySwM_117.1494 Anthoceros agrestis HOM05D006836 ORTHO05D008691 5.1e-65 252.3 235 51.9
Mapoly0098s0007 Marchantia polymorpha HOM05D006836 ORTHO05D008691 2.6e-64 250.0 221 53.8
SMO270G0068 Selaginella moellendorffii HOM05D006836 ORTHO05D008691 2.8e-63 246.5 224 50.0
Prupe.3G195700 Prunus persica HOM05D006836 ORTHO05D008691 2.0e-61 240.4 242 52.9
Haze_12612 Corylus avellana HOM05D006836 ORTHO05D008691 4.2e-59 232.6 257 49.0
MD17G1118400 Malus domestica HOM05D006836 ORTHO05D008691 2.7e-58 229.9 229 51.5
FAN02G3194 Fragaria x ananassa HOM05D006836 ORTHO05D008691 8.0e-58 228.4 242 49.6
MD07G1016400 Malus domestica HOM05D006836 ORTHO05D008691 1.0e-57 228.0 225 52.0
Cre05.g234750 Chlamydomonas reinhardtii HOM05D006836 ORTHO05D008691 2.2e-47 193.7 242 43.0
CBR_g3513 Chara braunii HOM05D006836 ORTHO05D000407 4.5e-37 159.5 199 40.2
FAN05G5431 Fragaria x ananassa HOM05D006836 ORTHO05D008691 2.8e-34 150.2 111 64.9
FAN09G0369 Fragaria x ananassa HOM05D006836 ORTHO05D008691 5.2e-33 146.0 111 64.0
SEGI_21977 Sequoiadendron giganteum HOM05D006836 ORTHO05D008691 2.6e-32 143.7 110 59.1
HPP92_003030 Vanilla planifolia HOM05D006836 ORTHO05D008691 4.4e-32 142.9 198 41.9
HPP92_003031 Vanilla planifolia HOM05D006836 ORTHO05D008691 1.7e-28 131.0 102 60.8
PRCOL_00003549 Prasinoderma coloniale HOM05D006836 ORTHO05D008691 1.0e-20 105.1 167 41.3
MCO08G347 Micromonas commoda HOM05D006836 ORTHO05D008691 1.9e-11 74.3 218 31.2
arahy.Tifrunner.gnm1.ann1.FY93PX Arachis hypogaea HOM05D006836 ORTHO05D000230 9.5e-11 72.0 45 66.7
Haze_12595 Corylus avellana HOM05D006836 ORTHO05D008691 4.7e-10 69.7 50 66.0
Hma1.2p1_0599F.1_g187040 Hydrangea macrophylla HOM05D006836 ORTHO05D008691 1.5e-08 64.7 132 36.4
Oeu037217.1 Olea europaea HOM05D006836 ORTHO05D049434 1.9e-06 57.8 143 32.2
Mapoly0098s0053 Marchantia polymorpha HOM05D001007 ORTHO05D008005 7.1e-06 55.8 67 34.3


User provided reference genes

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