Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 1.4e-259 899.0 449 100.0
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 1.4e-259 899.0 449 100.0
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 3.2e-259 897.9 449 99.8
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 2.7e-258 894.8 449 99.3
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 1.0e-257 892.9 449 99.1
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 1.1e-254 882.9 449 98.2
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 4.8e-247 857.4 449 95.3
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 3.8e-244 847.8 452 93.8
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 1.5e-240 835.9 454 93.6
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 5.6e-240 833.9 453 93.4
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 6.9e-238 827.0 452 92.0
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 2.6e-237 825.1 454 92.3
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 9.0e-230 800.0 452 87.8
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 1.1e-224 783.1 453 86.8
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 1.1e-219 766.5 452 87.6
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 4.7e-210 734.6 442 81.9
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 2.0e-208 729.2 443 80.8
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 2.6e-208 728.8 442 81.9
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 1.3e-207 726.5 442 81.4
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 2.2e-207 725.7 451 79.8
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 2.4e-206 722.2 451 79.2
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 1.6e-205 719.5 451 79.4
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 2.6e-205 718.8 443 80.1
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 2.6e-205 718.8 443 80.4
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 5.9e-205 717.6 452 78.3
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 2.2e-204 715.7 450 78.0
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 3.8e-204 714.9 442 79.4
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 3.8e-204 714.9 443 80.6
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 5.0e-204 714.5 450 78.4
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 5.0e-204 714.5 450 78.0
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 6.5e-204 714.1 442 79.6
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 8.5e-204 713.8 443 79.5
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 8.5e-204 713.8 443 79.5
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 8.5e-204 713.8 443 79.5
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 8.5e-204 713.8 450 78.0
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 2.5e-203 712.2 442 78.7
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 3.2e-203 711.8 440 80.2
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 9.4e-203 710.3 439 78.6
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 2.1e-202 709.1 446 79.6
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 4.7e-202 708.0 443 78.8
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 1.5e-200 703.0 442 78.7
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 7.5e-200 700.7 439 77.7
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 1.3e-199 699.9 448 77.2
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 1.3e-199 699.9 443 77.9
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 2.2e-199 699.1 441 78.2
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 2.2e-199 699.1 442 80.1
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 3.1e-198 695.3 449 76.6
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 5.3e-198 694.5 450 77.8
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 1.2e-197 693.3 442 77.1
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 1.0e-196 690.3 447 76.5
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 1.0e-196 690.3 439 77.2
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 3.8e-196 688.3 423 79.4
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 8.5e-196 687.2 441 78.0
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 1.5e-195 686.4 448 76.1
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.5e-195 686.4 423 79.2
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.9e-195 686.0 455 74.9
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 3.2e-195 685.3 422 79.1
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 5.5e-195 684.5 444 76.8
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 9.4e-195 683.7 423 79.2
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 9.4e-195 683.7 441 75.3
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 2.1e-194 682.6 444 77.3
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 3.6e-194 681.8 442 77.6
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 8.0e-194 680.6 452 76.1
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 1.4e-193 679.9 440 75.9
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.2e-192 676.8 450 74.9
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 2.6e-192 675.6 440 75.0
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 2.6e-192 675.6 443 76.5
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 3.4e-192 675.2 454 73.6
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 4.4e-192 674.9 440 75.0
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 4.4e-192 674.9 440 75.0
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 5.7e-192 674.5 449 75.9
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 7.5e-192 674.1 456 74.3
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 2.2e-191 672.5 442 76.5
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 3.7e-191 671.8 458 74.0
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 1.1e-190 670.2 442 74.9
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 1.8e-190 669.5 442 74.4
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 4.1e-190 668.3 458 74.2
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.5e-189 664.8 444 73.9
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 4.5e-189 664.8 453 73.5
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 7.7e-189 664.1 444 73.6
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 2.3e-188 662.5 458 72.7
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 3.8e-188 661.8 449 74.2
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 6.6e-188 661.0 459 73.2
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 8.6e-188 660.6 458 73.6
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 1.5e-187 659.8 457 74.2
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.5e-187 659.1 444 73.2
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 1.2e-186 656.8 450 71.8
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 1.2e-186 656.8 457 73.7
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 1.2e-186 656.8 441 74.6
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 4.7e-186 654.8 450 71.1
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 1.8e-185 652.9 459 72.8
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 3.0e-185 652.1 422 76.8
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 4.0e-185 651.7 475 70.5
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 2.0e-184 649.4 438 73.5
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 3.4e-184 648.7 457 71.3
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 3.7e-183 645.2 443 72.9
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 2.4e-182 642.5 449 71.7
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 4.1e-182 641.7 448 72.1
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 4.1e-182 641.7 430 72.3
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 7.0e-182 641.0 443 74.3
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 1.2e-181 640.2 450 71.6
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 2.7e-181 639.0 458 71.6
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 1.0e-180 637.1 563 62.3
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 3.8e-180 635.2 447 69.8
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 9.8e-176 620.5 440 70.5
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 8.3e-175 617.5 442 70.6
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 1.2e-173 613.6 443 68.2
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 2.7e-173 612.5 483 65.6
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 4.6e-173 611.7 443 68.2
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 1.3e-172 610.1 443 68.2
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 8.6e-172 607.4 381 77.4
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 8.0e-170 600.9 447 68.5
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 3.4e-168 595.5 465 65.8
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 3.4e-168 595.5 441 66.9
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 2.2e-167 592.8 421 70.1
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 3.7e-167 592.0 446 67.9
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 1.5e-163 580.1 429 68.3
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 1.8e-161 573.2 446 64.3
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 6.4e-159 564.7 444 63.7
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 4.1e-158 562.0 359 77.4
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 7.3e-155 551.2 443 65.9
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 3.5e-149 532.3 336 77.4
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 3.5e-149 532.3 395 69.6
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 3.9e-148 528.9 430 61.6
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 3.5e-141 505.8 342 71.6
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 6.0e-141 505.0 429 59.9
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.0e-136 490.0 433 59.6
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 3.4e-136 489.2 427 57.8
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 2.9e-135 486.1 335 70.7
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 4.2e-134 482.3 440 57.0
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 6.0e-133 478.4 435 56.1
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 4.0e-129 465.7 322 72.4
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 1.4e-121 440.7 394 59.6
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 4.1e-105 386.0 295 64.1
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 6.9e-105 385.2 336 60.7
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 4.8e-90 335.9 209 78.9
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 1.3e-87 327.8 258 65.1
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 2.2e-87 327.0 255 63.5
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 3.2e-86 323.2 208 78.8
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 1.8e-81 307.4 428 44.2
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 1.3e-74 284.6 197 72.1
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 4.1e-65 253.1 178 72.5
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 2.2e-50 204.1 160 68.1
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 3.9e-47 193.4 136 72.8
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 5.8e-43 179.5 152 60.5
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 9.2e-41 172.2 151 61.6
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 5.1e-39 166.4 222 46.8
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 1.9e-22 111.3 61 91.8
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 6.9e-12 76.3 56 64.3
MBI19_g01037_MAGBIO Magnolia biondii HOM05D016648 ORTHO05D004199 9.6e-06 55.8 88 38.6


User provided reference genes

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