Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 5.1e-200 701.0 404 100.0
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 5.1e-200 701.0 404 100.0
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 2.2e-198 695.7 404 99.5
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 1.3e-187 659.8 405 93.6
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 3.6e-185 651.7 406 93.1
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 3.4e-143 512.3 411 78.3
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 1.2e-127 460.7 362 80.4
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 1.1e-114 417.5 417 68.3
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 1.4e-109 400.6 417 65.5
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 1.5e-106 390.6 422 65.6
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 8.8e-83 311.6 320 67.5
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 2.6e-82 310.1 415 52.8
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 6.5e-62 242.3 451 49.0
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 1.8e-51 207.6 421 39.7
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 3.7e-49 199.9 417 38.1
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 7.0e-48 195.7 445 37.3
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 5.9e-47 192.6 415 41.2
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 1.9e-45 187.6 446 39.9
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 7.3e-45 185.7 415 39.0
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 4.0e-43 179.9 409 41.3
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 8.3e-41 172.2 435 38.4
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 3.2e-40 170.2 447 35.8
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.7e-39 167.2 386 37.0
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.7e-38 164.5 385 36.4
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 3.9e-38 163.3 427 36.3
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 1.5e-37 161.4 419 35.1
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 7.3e-37 159.1 496 33.9
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 1.2e-36 158.3 463 35.0
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 4.7e-36 156.4 441 37.6
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 6.2e-36 156.0 477 34.8
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 3.1e-35 153.7 458 37.1
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 2.6e-34 150.6 450 35.3
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 2.6e-34 150.6 477 34.6
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 2.6e-34 150.6 491 34.2
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 3.4e-34 150.2 447 34.9
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 4.4e-34 149.8 438 34.7
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 7.5e-34 149.1 428 33.6
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 1.7e-33 147.9 439 38.3
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 2.2e-33 147.5 465 34.8
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 3.7e-33 146.7 454 35.9
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 1.4e-32 144.8 392 35.7
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.2e-32 143.7 420 37.6
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 7.0e-32 142.5 442 34.4
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 9.2e-32 142.1 422 32.7
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 1.6e-31 141.4 440 35.2
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 2.1e-31 141.0 429 37.5
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 2.7e-31 140.6 409 35.2
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 4.6e-31 139.8 460 34.3
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 4.6e-31 139.8 460 34.3
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 1.0e-30 138.7 429 35.0
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 1.0e-30 138.7 449 38.3
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 3.9e-30 136.7 428 38.8
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 6.6e-30 136.0 465 35.1
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 5.6e-29 132.9 391 33.0
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 7.3e-29 132.5 411 33.6
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 2.1e-28 131.0 414 37.7
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 2.1e-28 131.0 163 52.1
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 2.8e-28 130.6 398 33.7
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 2.8e-28 130.6 449 34.7
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 4.7e-28 129.8 428 36.2
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 6.2e-28 129.4 459 33.6
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 1.1e-27 128.6 501 32.5
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 1.4e-27 128.3 442 36.4
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 2.3e-27 127.5 427 37.5
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 2.3e-27 127.5 427 37.5
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 4.0e-27 126.7 130 56.9
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 4.0e-27 126.7 385 37.7
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 8.9e-27 125.6 391 33.8
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 2.6e-26 124.0 148 52.0
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 2.6e-26 124.0 415 31.6
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 2.6e-26 124.0 432 33.6
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 4.4e-26 123.2 424 34.4
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 4.4e-26 123.2 391 31.2
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 1.3e-25 121.7 437 32.0
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 1.3e-25 121.7 295 36.9
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 2.2e-25 120.9 459 31.2
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 2.9e-25 120.6 391 34.3
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 2.9e-25 120.6 424 37.0
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 2.9e-25 120.6 148 47.3
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 3.7e-25 120.2 483 30.4
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.4e-24 118.2 387 34.6
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 2.4e-24 117.5 296 36.8
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 4.1e-24 116.7 143 55.9
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 4.1e-24 116.7 387 34.4
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 5.4e-24 116.3 290 36.9
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 9.2e-24 115.5 428 32.9
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 1.2e-23 115.2 145 56.6
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 7.8e-23 112.5 238 42.4
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 1.0e-22 112.1 407 32.9
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 2.3e-22 110.9 242 37.6
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 3.9e-22 110.2 377 31.3
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 6.6e-22 109.4 128 59.4
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 8.6e-22 109.0 180 45.6
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 1.1e-21 108.6 169 41.4
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 1.1e-21 108.6 388 30.9
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 2.5e-21 107.5 453 29.8
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 3.3e-21 107.1 373 33.0
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 3.3e-21 107.1 128 46.1
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 5.6e-21 106.3 403 29.3
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 7.3e-21 105.9 301 40.5
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.2e-20 105.1 425 32.5
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.1e-19 102.1 410 30.5
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 3.1e-19 100.5 426 32.2
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 5.2e-19 99.8 600 28.3
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 5.2e-19 99.8 428 34.1
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 6.8e-19 99.4 449 31.4
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 6.8e-19 99.4 596 28.2
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 8.9e-19 99.0 596 29.0
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 2.6e-18 97.4 603 28.5
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.4e-18 97.1 174 40.2
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.3e-17 95.1 167 39.5
Haze_03369 Corylus avellana HOM05D005417 ORTHO05D002591 4.9e-17 93.2 294 37.8
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 1.1e-16 92.0 425 32.0
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 1.1e-16 92.0 173 39.9
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 1.1e-16 92.0 522 31.0
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 9.2e-16 89.0 396 31.1
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.3e-14 85.1 148 42.6
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 2.3e-14 84.3 179 36.3
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 8.7e-14 82.4 147 42.9
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 1.9e-13 81.3 170 37.1
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 6.2e-12 76.3 414 28.3
AUR62016544 Chenopodium quinoa HOM05D005417 ORTHO05D002591 1.8e-11 74.7 114 43.9
Gohir.D07G164700 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.5e-10 71.6 381 28.3
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 5.8e-10 69.7 156 34.6
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 7.6e-10 69.3 46 69.6
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 9.9e-10 68.9 401 28.2
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 1.7e-09 68.2 119 42.9
Lj5g0025661 Lotus japonicus HOM05D005417 ORTHO05D002591 7.1e-08 62.8 150 41.3
unitig_749.g13592 Utricularia gibba HOM05D005417 ORTHO05D002591 1.2e-07 62.0 387 26.1
Os11g0458100 Oryza sativa ssp. japonica HOM05D005417 ORTHO05D002591 2.1e-07 61.2 135 53.3
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 2.7e-07 60.8 246 36.2
Sed0007907 Sechium edule HOM05D005417 ORTHO05D002591 5.1e-06 56.6 370 30.3


User provided reference genes

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