Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35782 Brassica carinata HOM05D006799 ORTHO05D008391 1.6e-103 379.4 191 100.0
BolC7t41559H Brassica oleracea HOM05D006799 ORTHO05D008391 4.0e-102 374.8 192 99.5
C07p10930 Brassica napus HOM05D006799 ORTHO05D008391 8.9e-102 373.6 192 99.0
A07p07240 Brassica napus HOM05D006799 ORTHO05D008391 2.2e-100 369.0 191 96.3
BraA07t28510Z Brassica rapa HOM05D006799 ORTHO05D008391 3.2e-99 365.2 191 95.8
Sp3g22710 Schrenkiella parvula HOM05D006799 ORTHO05D008391 2.8e-87 325.5 191 83.8
BcaB06g26722 Brassica carinata HOM05D006799 ORTHO05D008391 6.2e-87 324.3 191 87.4
CARHR101440 Cardamine hirsuta HOM05D006799 ORTHO05D008391 6.6e-81 304.3 191 80.6
Thhalv10002682m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 3.3e-80 302.0 191 80.1
AL3G40810 Arabidopsis lyrata HOM05D006799 ORTHO05D008391 4.4e-77 291.6 189 77.8
Carub.0003s2545 Capsella rubella HOM05D006799 ORTHO05D008391 1.7e-76 289.7 192 75.5
AT3G25120 Arabidopsis thaliana HOM05D006799 ORTHO05D008391 7.8e-74 280.8 189 75.1
THA.LOC104804623 Tarenaya hassleriana HOM05D006799 ORTHO05D008391 2.6e-69 265.8 197 69.5
Aa31LG9G5010 Aethionema arabicum HOM05D006799 ORTHO05D008391 1.7e-68 263.1 195 68.7
CARHR218390 Cardamine hirsuta HOM05D006799 ORTHO05D008391 1.9e-59 233.0 179 65.9
A04p08990 Brassica napus HOM05D006799 ORTHO05D008391 1.0e-57 227.3 191 63.4
C04p42860 Brassica napus HOM05D006799 ORTHO05D008391 1.0e-57 227.3 191 63.4
BraA04t16594Z Brassica rapa HOM05D006799 ORTHO05D008391 1.0e-57 227.3 191 63.4
BcaB03g16157 Brassica carinata HOM05D006799 ORTHO05D008391 1.3e-57 226.9 191 62.8
BcaC02g09450 Brassica carinata HOM05D006799 ORTHO05D008391 3.9e-57 225.3 191 62.8
BolC4t25853H Brassica oleracea HOM05D006799 ORTHO05D008391 4.3e-56 221.9 191 62.3
Cpa.g.sc21.107 Carica papaya HOM05D006799 ORTHO05D008391 6.0e-50 201.4 164 61.0
Thhalv10026882m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 7.9e-50 201.1 192 60.9
COL.COLO4_15616 Corchorus olitorius HOM05D006799 ORTHO05D008391 1.1e-48 197.2 170 58.8
Dinv12648 Davidia involucrata HOM05D006799 ORTHO05D008391 5.7e-48 194.9 189 55.6
Eucgr.K02137 Eucalyptus grandis HOM05D006799 ORTHO05D008391 2.8e-47 192.6 163 60.1
DCAR_012670 Daucus carota HOM05D006799 ORTHO05D008391 3.7e-47 192.2 165 59.4
PGR044G2699 Punica granatum HOM05D006799 ORTHO05D008391 8.2e-47 191.0 206 51.5
Potri.002G246000 Populus trichocarpa HOM05D006799 ORTHO05D008391 1.1e-46 190.7 173 56.1
Thecc.01G219900 Theobroma cacao HOM05D006799 ORTHO05D008391 1.1e-46 190.7 169 58.0
Sabra02G0187300 Salix brachista HOM05D006799 ORTHO05D008391 1.8e-46 189.9 195 53.3
Hma1.2p1_0226F.1_g095380 Hydrangea macrophylla HOM05D006799 ORTHO05D008391 5.3e-46 188.3 177 57.1
Atru.chr6.1426 Acer truncatum HOM05D006799 ORTHO05D008391 6.9e-46 188.0 197 54.3
Manes.13G049500 Manihot esculenta HOM05D006799 ORTHO05D008391 1.5e-45 186.8 189 52.4
TAR362G0955 Trochodendron aralioides HOM05D006799 ORTHO05D008391 1.5e-45 186.8 177 54.2
MSTRG.17994 Avicennia marina HOM05D006799 ORTHO05D008391 2.0e-45 186.4 175 57.7
Ciclev10022385m.g Citrus clementina HOM05D006799 ORTHO05D008391 3.4e-45 185.7 199 50.3
Actinidia23709 Actinidia chinensis HOM05D006799 ORTHO05D008391 4.5e-45 185.3 188 54.3
QL09p051225 Quercus lobata HOM05D006799 ORTHO05D008391 5.9e-45 184.9 203 50.7
Sed0008494 Sechium edule HOM05D006799 ORTHO05D008391 7.6e-45 184.5 168 54.2
ClCG09G008610 Citrullus lanatus HOM05D006799 ORTHO05D008391 1.0e-44 184.1 168 54.8
Gorai.001G105200 Gossypium raimondii HOM05D006799 ORTHO05D008391 2.9e-44 182.6 187 54.0
Sc17g0002120 Simmondsia chinensis HOM05D006799 ORTHO05D008391 2.9e-44 182.6 177 54.8
CANSAT01G3095 Cannabis sativa HOM05D006799 ORTHO05D008391 3.8e-44 182.2 172 55.2
Gohir.D07G097800 Gossypium hirsutum HOM05D006799 ORTHO05D008391 3.8e-44 182.2 187 54.0
TWI18G0944 Tripterygium wilfordii HOM05D006799 ORTHO05D008391 3.8e-44 182.2 193 51.8
GSVIVG01003251001 Vitis vinifera HOM05D006799 ORTHO05D008391 3.8e-44 182.2 170 55.9
CsaV3_7G026360 Cucumis sativus L. HOM05D006799 ORTHO05D008391 5.0e-44 181.8 168 53.6
Hund05578 Selenicereus undatus HOM05D006799 ORTHO05D008391 1.1e-43 180.6 184 52.2
Gohir.A07G093200 Gossypium hirsutum HOM05D006799 ORTHO05D008391 1.4e-43 180.3 187 53.5
Peaxi162Scf00068g02310 Petunia axillaris HOM05D006799 ORTHO05D008391 1.4e-43 180.3 184 54.3
SGA_v2.0_scaffold6G03220 Striga asiatica HOM05D006799 ORTHO05D008391 1.4e-43 180.3 166 59.0
MBI11_g07417_MAGBIO Magnolia biondii HOM05D006799 ORTHO05D008391 1.9e-43 179.9 175 53.1
Duzib138G1661 Durio zibethinus HOM05D006799 ORTHO05D008391 3.2e-43 179.1 168 58.3
CiPaw.02G023800 Carya illinoinensis HOM05D006799 ORTHO05D008391 4.2e-43 178.7 175 51.4
Nitab4.5_0000045g0540 Nicotiana tabacum HOM05D006799 ORTHO05D008391 5.5e-43 178.3 170 57.6
Nitab4.5_0002641g0110 Nicotiana tabacum HOM05D006799 ORTHO05D008391 5.5e-43 178.3 177 54.2
CSS0002557 Camellia sinensis var. sinensis HOM05D006799 ORTHO05D008391 7.2e-43 177.9 176 53.4
CAN.G181.54 Capsicum annuum HOM05D006799 ORTHO05D008391 7.2e-43 177.9 167 56.3
Cc01_g16700 Coffea canephora HOM05D006799 ORTHO05D008391 7.2e-43 177.9 192 52.6
EL10Ac5g12475 Beta vulgaris HOM05D006799 ORTHO05D008391 9.3e-43 177.6 164 54.3
Haze_15251 Corylus avellana HOM05D006799 ORTHO05D008391 1.2e-42 177.2 199 48.2
Sopen06g002680 Solanum pennellii HOM05D006799 ORTHO05D008391 1.6e-42 176.8 167 56.9
Migut.N00632 Erythranthe guttata HOM05D006799 ORTHO05D008391 2.7e-42 176.0 187 50.3
Rhsim01G0253200 Rhododendron simsii HOM05D006799 ORTHO05D008391 2.7e-42 176.0 176 55.7
Solyc06g007800.4 Solanum lycopersicum HOM05D006799 ORTHO05D008391 2.7e-42 176.0 167 56.9
Lj1C89G17 Lonicera japonica HOM05D006799 ORTHO05D008391 3.6e-42 175.6 166 53.6
SalBow3G4070 Salvia bowleyana HOM05D006799 ORTHO05D008391 4.6e-42 175.3 197 50.8
PGSC0003DMG400022033 Solanum tuberosum HOM05D006799 ORTHO05D008391 6.1e-42 174.9 173 55.5
MELO3C021082.2 Cucumis melo HOM05D006799 ORTHO05D008391 1.0e-41 174.1 178 51.1
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 3.0e-41 172.6 205 45.9
MD10G1159700 Malus domestica HOM05D006799 ORTHO05D008391 3.9e-41 172.2 206 46.6
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 6.7e-41 171.4 205 45.9
Prupe.8G198800 Prunus persica HOM05D006799 ORTHO05D008391 6.7e-41 171.4 204 46.1
RcHm_v2.0_Chr6g0284091 Rosa chinensis HOM05D006799 ORTHO05D008391 6.7e-41 171.4 205 45.4
FvH4_2g18530 Fragaria vesca HOM05D006799 ORTHO05D008391 1.5e-40 170.2 205 45.4
VMungo0331G1591 Vigna mungo HOM05D006799 ORTHO05D008391 1.9e-40 169.9 200 49.0
MD05G1171500 Malus domestica HOM05D006799 ORTHO05D008391 2.5e-40 169.5 206 46.1
arahy.Tifrunner.gnm1.ann1.AR5NL3 Arachis hypogaea HOM05D006799 ORTHO05D008391 3.3e-40 169.1 195 50.3
Dinv19171 Davidia involucrata HOM05D006799 ORTHO05D008391 9.7e-40 167.5 154 58.4
Aqoxy5G00028 Aquilegia oxysepala HOM05D006799 ORTHO05D008391 1.3e-39 167.2 173 49.7
Glyma.17G151300 Glycine max HOM05D006799 ORTHO05D008391 1.6e-39 166.8 173 52.0
arahy.Tifrunner.gnm1.ann1.H272JM Arachis hypogaea HOM05D006799 ORTHO05D008391 2.8e-39 166.0 195 49.2
Nitab4.5_0002616g0150 Nicotiana tabacum HOM05D006799 ORTHO05D008391 2.8e-39 166.0 201 48.3
Lj3g0009647 Lotus japonicus HOM05D006799 ORTHO05D008391 6.3e-39 164.9 186 48.4
Cfa004160 Carpinus fangiana HOM05D006799 ORTHO05D008391 1.1e-38 164.1 165 51.5
CDE05G2155 Ceratophyllum demersum HOM05D006799 ORTHO05D008391 1.1e-38 164.1 176 48.9
PSO063G5306 Papaver somniferum HOM05D006799 ORTHO05D008391 1.4e-38 163.7 178 48.9
Phvul.010G021800 Phaseolus vulgaris HOM05D006799 ORTHO05D008391 1.4e-38 163.7 196 48.0
vmacro14734 Vaccinium macrocarpon HOM05D006799 ORTHO05D008391 1.4e-38 163.7 224 44.2
Psat4g203520 Pisum sativum HOM05D006799 ORTHO05D008391 1.8e-38 163.3 186 48.9
unitig_0.g374 Utricularia gibba HOM05D006799 ORTHO05D008391 1.8e-38 163.3 179 51.4
TPR.G11194 Trifolium pratense HOM05D006799 ORTHO05D008391 4.1e-38 162.2 173 49.7
Os04g0376100 Oryza sativa ssp. japonica HOM05D006799 ORTHO05D008391 9.1e-38 161.0 193 47.7
AUR62019885 Chenopodium quinoa HOM05D006799 ORTHO05D008391 1.5e-37 160.2 177 46.3
AUR62007023 Chenopodium quinoa HOM05D006799 ORTHO05D008391 2.6e-37 159.5 199 43.7
Lalb_Chr12g0209871 Lupinus albus HOM05D006799 ORTHO05D008391 3.4e-37 159.1 187 48.7
Medtr8g012725 Medicago truncatula HOM05D006799 ORTHO05D008391 5.9e-37 158.3 165 50.9
Zm00001eb086040 Zea mays HOM05D006799 ORTHO05D008391 6.5e-36 154.8 160 51.9
Lsat_1_v5_gn_8_89340 Lactuca sativa HOM05D006799 ORTHO05D008391 4.2e-35 152.1 170 48.8
Ah.12g052960 Amaranthus hybridus HOM05D006799 ORTHO05D008391 6.1e-34 148.3 179 45.3
ECA236G1739 Erigeron canadensis HOM05D006799 ORTHO05D008391 3.0e-33 146.0 172 47.7
Ca_23225_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 5.1e-33 145.2 163 46.6
ATR0561G177 Amborella trichopoda HOM05D006799 ORTHO05D008391 1.1e-32 144.1 175 45.1
HanXRQChr16g0500591 Helianthus annuus HOM05D006799 ORTHO05D008391 2.8e-31 139.4 171 44.4
Sc17g0002130 Simmondsia chinensis HOM05D006799 ORTHO05D008391 1.1e-24 117.5 96 63.5
Peaxi162Scf00372g01214 Petunia axillaris HOM05D006799 ORTHO05D008391 5.7e-24 115.2 118 52.5
SEGI_12663 Sequoiadendron giganteum HOM05D006799 ORTHO05D008391 4.8e-23 112.1 180 37.8
FAN27G1455 Fragaria x ananassa HOM05D006799 ORTHO05D008391 1.1e-22 110.9 126 46.8
arahy.Tifrunner.gnm1.ann1.9RT6YB Arachis hypogaea HOM05D006799 ORTHO05D008391 3.8e-20 102.4 105 52.4
Mapoly0010s0131 Marchantia polymorpha HOM05D006799 ORTHO05D008391 6.5e-20 101.7 174 36.8
AagrBONN_evm.TU.Sc2ySwM_228.181 Anthoceros agrestis HOM05D006799 ORTHO05D008391 5.2e-17 92.0 168 34.5
Pp3c22_13870 Physcomitrium patens HOM05D006799 ORTHO05D008391 6.3e-15 85.1 173 31.8
CBR_g52029 Chara braunii HOM05D006799 ORTHO05D008391 1.9e-11 73.6 110 40.0
Rhsim01G0253100 Rhododendron simsii HOM05D006799 ORTHO05D008391 5.5e-11 72.0 99 45.5
SMO337G0092 Selaginella moellendorffii HOM05D006799 ORTHO05D008391 7.0e-06 55.1 168 28.6


User provided reference genes

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