Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 0.0e+00 1145.2 588 100.0
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 0.0e+00 1145.2 588 100.0
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 0.0e+00 1115.5 600 96.2
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 0.0e+00 1095.1 601 94.3
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 0.0e+00 1090.5 589 96.1
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 0.0e+00 1087.0 589 95.9
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 0.0e+00 1081.2 601 93.3
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 0.0e+00 1080.9 597 94.0
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 0.0e+00 1078.5 597 94.1
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 0.0e+00 1076.2 593 94.1
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 0.0e+00 1076.2 593 94.1
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 0.0e+00 1076.2 593 94.1
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 0.0e+00 1075.5 599 93.5
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 2.0e-311 1071.6 597 93.3
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 2.0e-309 1065.1 598 91.8
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 3.3e-304 1047.7 603 89.9
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 3.4e-301 1037.7 605 86.9
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 1.1e-299 1032.7 539 96.8
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 6.2e-295 1016.9 600 87.2
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 3.4e-293 1011.1 607 85.5
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 5.2e-286 987.3 544 94.3
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 2.5e-272 941.8 607 78.9
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 2.4e-262 908.7 593 77.6
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 1.5e-261 906.0 598 78.4
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 3.4e-261 904.8 594 78.1
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 9.9e-261 903.3 599 77.8
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 2.2e-260 902.1 597 78.2
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 4.9e-260 901.0 595 77.0
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 6.4e-260 900.6 594 77.4
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 1.9e-259 899.0 594 77.3
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 2.4e-259 898.7 598 77.4
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 2.4e-259 898.7 601 76.5
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 9.3e-259 896.7 596 77.5
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 9.3e-259 896.7 594 76.9
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 2.7e-258 895.2 598 76.4
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 3.5e-258 894.8 599 76.6
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 6.0e-258 894.0 586 78.2
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 7.9e-258 893.6 598 76.6
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 8.7e-257 890.2 593 76.9
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.1e-256 889.8 604 75.2
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.5e-256 889.4 604 75.2
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 1.9e-256 889.0 610 74.9
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 4.3e-256 887.9 601 76.2
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 2.1e-255 885.6 596 76.2
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 2.1e-255 885.6 601 75.2
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 2.8e-255 885.2 599 76.3
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.8e-255 884.4 606 74.4
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 2.4e-254 882.1 598 76.3
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 4.0e-254 881.3 598 76.3
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 2.0e-253 879.0 601 75.0
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 9.9e-253 876.7 594 77.6
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 1.7e-252 875.9 594 75.6
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 6.4e-252 874.0 596 75.8
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 8.4e-252 873.6 596 74.8
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 1.2e-250 869.8 600 73.8
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 3.5e-250 868.2 603 74.1
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 6.0e-250 867.5 595 75.1
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 3.9e-249 864.8 604 73.3
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 5.1e-249 864.4 608 74.0
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 5.1e-249 864.4 604 73.2
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 1.1e-248 863.2 604 73.0
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 1.1e-248 863.2 599 73.5
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 5.6e-248 860.9 606 74.3
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 7.4e-248 860.5 588 75.2
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.8e-247 858.6 599 72.1
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 6.2e-247 857.4 599 72.1
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 6.2e-247 857.4 599 74.3
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 3.1e-246 855.1 600 73.7
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 5.3e-246 854.4 597 74.4
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 5.3e-246 854.4 597 74.4
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 2.0e-245 852.4 594 73.6
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 2.0e-245 852.4 593 73.9
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 5.8e-245 850.9 597 74.2
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 5.8e-245 850.9 594 73.1
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 1.3e-244 849.7 594 73.9
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 1.3e-244 849.7 594 73.9
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 1.9e-243 845.9 597 73.2
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 2.5e-243 845.5 595 73.8
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 3.2e-243 845.1 597 73.4
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 9.3e-243 843.6 598 73.1
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 1.2e-242 843.2 594 72.9
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 1.0e-241 840.1 596 73.2
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 1.3e-239 833.2 595 71.8
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 2.8e-239 832.0 596 73.3
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 4.1e-238 828.2 596 72.5
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 6.9e-238 827.4 590 71.5
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 1.5e-237 826.2 595 72.3
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 2.0e-237 825.9 607 72.3
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 2.0e-237 825.9 588 72.4
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 2.2e-236 822.4 588 71.9
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 3.8e-236 821.6 594 72.2
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 5.0e-236 821.2 593 71.8
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 2.5e-235 818.9 610 68.4
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 5.5e-235 817.8 616 68.5
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 2.7e-234 815.5 592 72.0
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 5.1e-233 811.2 597 70.0
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 4.8e-231 804.7 593 69.6
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 1.1e-230 803.5 588 70.6
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 4.5e-229 798.1 605 67.6
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 7.7e-229 797.3 591 70.1
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 7.2e-227 790.8 493 85.6
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 6.1e-226 787.7 603 67.5
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 1.0e-225 786.9 598 68.9
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 1.8e-225 786.2 600 68.0
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 1.1e-224 783.5 601 67.9
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 1.5e-224 783.1 599 69.3
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.4e-222 776.5 588 67.9
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 7.0e-222 774.2 604 68.4
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 2.5e-219 765.8 607 67.7
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 4.2e-219 765.0 645 63.4
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 5.5e-219 764.6 611 67.1
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.0e-217 760.4 611 66.6
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.4e-217 760.0 611 66.8
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 7.2e-211 737.6 621 63.4
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 3.0e-209 732.3 521 72.9
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 6.7e-209 731.1 601 64.6
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 3.5e-205 718.8 595 65.5
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 1.3e-204 716.8 595 65.0
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 8.0e-202 707.6 592 63.9
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 6.3e-199 698.0 568 65.5
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.0e-196 690.6 474 74.3
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.7e-173 612.8 599 57.1
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 1.1e-155 554.3 604 51.7
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 7.3e-155 551.6 520 59.8
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 3.6e-154 549.3 595 50.3
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 5.4e-142 508.8 603 49.9
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 6.5e-135 485.3 616 44.3
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 1.8e-129 467.2 598 48.2
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 3.8e-127 459.5 590 46.1
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 1.0e-87 328.6 209 76.6
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.1e-85 320.9 243 65.8
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 9.8e-83 312.0 327 51.7
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 4.9e-74 283.1 625 32.3
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 4.6e-64 250.0 260 56.2
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 6.6e-63 246.1 576 31.8
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 8.1e-61 239.2 235 59.6
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 6.4e-50 203.0 147 68.7
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 2.1e-48 198.0 151 70.2
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 6.4e-34 149.8 79 93.7
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 5.4e-33 146.7 79 92.4
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 1.3e-31 142.1 624 23.2
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 3.0e-31 141.0 201 43.3
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 1.1e-30 139.0 98 65.3
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 9.0e-20 102.8 72 66.7
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 1.0e-15 89.4 114 43.0
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 3.3e-14 84.3 212 39.6
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 1.4e-12 79.0 90 45.6
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 3.8e-10 70.9 59 61.0
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 2.5e-06 58.2 94 40.4


User provided reference genes

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