Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35743 Brassica carinata HOM05D000469 ORTHO05D000323 2.3e-114 415.6 216 100.0
BolC7t41616H Brassica oleracea HOM05D000469 ORTHO05D000323 2.9e-85 318.9 187 92.0
C07p11360 Brassica napus HOM05D001537 ORTHO05D021960 2.3e-77 292.7 161 93.2
C04p18390 Brassica napus HOM05D000469 ORTHO05D000323 8.0e-75 284.3 188 81.4
BcaC04g19532 Brassica carinata HOM05D000469 ORTHO05D000323 4.0e-74 282.0 168 86.9
BraA03t13483Z Brassica rapa HOM05D000469 ORTHO05D000323 3.6e-59 232.3 165 73.9
A03p43450 Brassica napus HOM05D000469 ORTHO05D000323 8.1e-59 231.1 165 73.3
BcaB03g14603 Brassica carinata HOM05D000469 ORTHO05D000323 1.2e-57 227.3 165 73.3
BcaC01g03349 Brassica carinata HOM05D000469 ORTHO05D000323 2.6e-57 226.1 190 66.8
C01p10410 Brassica napus HOM05D000469 ORTHO05D000323 1.3e-56 223.8 145 81.4
C03p53410 Brassica napus HOM05D000469 ORTHO05D000323 4.6e-54 215.3 168 70.8
BolC3t17601H Brassica oleracea HOM05D000469 ORTHO05D000323 4.6e-54 215.3 168 70.8
BolC1t01001H Brassica oleracea HOM05D000469 ORTHO05D000323 3.0e-53 212.6 139 80.6
Sp3g21790 Schrenkiella parvula HOM05D000469 ORTHO05D000323 3.3e-52 209.1 165 69.7
BraA05t21467Z Brassica rapa HOM05D018358 ORTHO05D000323 7.6e-49 198.0 133 78.2
AL3G39120 Arabidopsis lyrata HOM05D000469 ORTHO05D000323 2.9e-48 196.1 171 66.7
Thhalv10002558m.g Eutrema salsugineum HOM05D000469 ORTHO05D000323 1.1e-47 194.1 129 76.7
A01p31080 Brassica napus HOM05D000469 ORTHO05D000323 7.1e-47 191.4 147 68.0
BraA01t03233Z Brassica rapa HOM05D000469 ORTHO05D000323 7.1e-47 191.4 167 67.1
C01p39630 Brassica napus HOM05D000469 ORTHO05D000323 1.6e-46 190.3 147 68.0
BolC1t03911H Brassica oleracea HOM05D000469 ORTHO05D000323 1.6e-46 190.3 147 68.0
AT3G24140 Arabidopsis thaliana HOM05D000469 ORTHO05D000323 3.5e-46 189.1 171 67.3
BcaB04g20403 Brassica carinata HOM05D000469 ORTHO05D000323 7.8e-46 188.0 162 64.8
Carub.0003s2436 Capsella rubella HOM05D000469 ORTHO05D000323 1.6e-43 180.3 173 64.2
BraA07t28613Z Brassica rapa HOM05D000469 ORTHO05D000323 1.4e-42 177.2 144 63.2
BcaC06g35615 Brassica carinata HOM05D000469 ORTHO05D000323 2.4e-42 176.4 163 60.1
C07p12940 Brassica napus HOM05D000469 ORTHO05D000323 2.4e-42 176.4 163 60.1
BolC7t41778H Brassica oleracea HOM05D000469 ORTHO05D000323 2.4e-42 176.4 163 60.1
BcaB06g26583 Brassica carinata HOM05D000469 ORTHO05D000323 1.9e-39 166.8 162 58.6
A07p08300 Brassica napus HOM05D000469 ORTHO05D000323 9.3e-39 164.5 132 63.6
CARHR100060 Cardamine hirsuta HOM05D000469 ORTHO05D000323 9.3e-39 164.5 162 63.6
AL3G40120 Arabidopsis lyrata HOM05D000469 ORTHO05D000323 1.1e-34 151.0 119 68.9
Sp3g21660 Schrenkiella parvula HOM05D000469 ORTHO05D000323 3.1e-34 149.4 149 59.1
BcaB01g01740 Brassica carinata HOM05D000469 ORTHO05D000323 1.7e-32 143.7 109 72.5
BcaC09g51698 Brassica carinata HOM05D000469 ORTHO05D000323 3.8e-32 142.5 107 72.0
A01p31170 Brassica napus HOM05D000469 ORTHO05D000323 1.3e-27 127.5 168 49.4
Thhalv10002990m.g Eutrema salsugineum HOM05D000469 ORTHO05D000323 5.3e-26 122.1 140 52.9
C01p39720 Brassica napus HOM05D000469 ORTHO05D000323 7.1e-23 111.7 161 46.6
Aa31LG8G10720 Aethionema arabicum HOM05D000469 ORTHO05D000323 1.8e-21 107.1 163 46.0
BcaB06g27213 Brassica carinata HOM05D000469 ORTHO05D000323 1.8e-21 107.1 130 50.8
BcaB04g20414 Brassica carinata HOM05D000469 ORTHO05D000323 3.3e-20 102.8 158 46.2
THA.LOC104804813 Tarenaya hassleriana HOM05D000469 ORTHO05D000323 9.6e-20 101.3 111 57.7
THA.LOC104808716 Tarenaya hassleriana HOM05D000469 ORTHO05D000323 5.5e-15 85.5 124 44.4
Lalb_Chr10g0099531 Lupinus albus HOM05D000469 ORTHO05D000323 2.3e-13 80.1 162 40.1
Lj6A559T13 Lonicera japonica HOM05D000469 ORTHO05D000323 3.0e-13 79.7 128 40.6
Manes.03G148500 Manihot esculenta HOM05D000469 ORTHO05D000323 3.0e-13 79.7 165 37.6
Gohir.A10G123300 Gossypium hirsutum HOM05D000469 ORTHO05D000323 3.9e-13 79.3 164 40.9
Lalb_Chr04g0255091 Lupinus albus HOM05D000469 ORTHO05D000323 3.9e-13 79.3 181 38.1
Thecc.04G205100 Theobroma cacao HOM05D000469 ORTHO05D000323 5.1e-13 79.0 167 40.7
CiPaw.02G066700 Carya illinoinensis HOM05D000469 ORTHO05D000323 8.7e-13 78.2 178 35.4
Gohir.D10G142500 Gossypium hirsutum HOM05D000469 ORTHO05D000323 2.5e-12 76.6 164 40.9
Oeu016730.1 Olea europaea HOM05D000469 ORTHO05D000323 2.5e-12 76.6 173 34.1
Duzib151G0523 Durio zibethinus HOM05D000469 ORTHO05D000323 3.3e-12 76.3 166 40.4
Peaxi162Scf00423g00219 Petunia axillaris HOM05D000469 ORTHO05D000323 4.3e-12 75.9 160 36.2
Gorai.011G159100 Gossypium raimondii HOM05D000469 ORTHO05D000323 5.7e-12 75.5 164 40.2
Potri.001G314400 Populus trichocarpa HOM05D000469 ORTHO05D000323 7.4e-12 75.1 177 37.3
Cc03_g07740 Coffea canephora HOM05D000469 ORTHO05D000323 9.6e-12 74.7 169 37.9
Aqoxy2G03880 Aquilegia oxysepala HOM05D000469 ORTHO05D000323 1.3e-11 74.3 160 36.9
Lj2g0022928 Lotus japonicus HOM05D000469 ORTHO05D000323 1.6e-11 73.9 130 43.1
Potri.017G054500 Populus trichocarpa HOM05D000469 ORTHO05D000323 1.6e-11 73.9 176 34.7
Manes.15G052900 Manihot esculenta HOM05D000469 ORTHO05D000323 2.1e-11 73.6 181 35.9
Sopen05g032160 Solanum pennellii HOM05D000469 ORTHO05D000323 2.1e-11 73.6 95 50.5
Lj6A570G14 Lonicera japonica HOM05D000469 ORTHO05D000323 2.8e-11 73.2 128 39.1
RcHm_v2.0_Chr4g0415421 Rosa chinensis HOM05D000469 ORTHO05D000323 2.8e-11 73.2 145 41.4
VMungo1215G1318 Vigna mungo HOM05D000469 ORTHO05D000323 2.8e-11 73.2 178 36.5
Atru.chr4.1713 Acer truncatum HOM05D000469 ORTHO05D000323 3.7e-11 72.8 57 56.1
FAN07G2256 Fragaria x ananassa HOM05D000469 ORTHO05D000323 3.7e-11 72.8 135 39.3
HanXRQChr14g0435881 Helianthus annuus HOM05D000469 ORTHO05D000323 3.7e-11 72.8 89 49.4
MSTRG.9819 Avicennia marina HOM05D000469 ORTHO05D000323 6.3e-11 72.0 107 42.1
DCAR_026607 Daucus carota HOM05D000469 ORTHO05D000323 8.2e-11 71.6 74 51.4
Sabra17G0046300 Salix brachista HOM05D000469 ORTHO05D000323 8.2e-11 71.6 176 36.4
PGSC0003DMG400015760 Solanum tuberosum HOM05D000469 ORTHO05D000323 8.2e-11 71.6 113 45.1
FvH4_1g23290 Fragaria vesca HOM05D000469 ORTHO05D000323 1.1e-10 71.2 135 40.7
FvH4_4g15850 Fragaria vesca HOM05D000469 ORTHO05D000323 1.1e-10 71.2 135 40.7
MD04G1006400 Malus domestica HOM05D000469 ORTHO05D000323 1.8e-10 70.5 72 56.9
Phvul.003G033900 Phaseolus vulgaris HOM05D000469 ORTHO05D000323 1.8e-10 70.5 183 36.1
FAN12G0441 Fragaria x ananassa HOM05D000469 ORTHO05D000323 2.4e-10 70.1 135 40.7
FAN19G0823 Fragaria x ananassa HOM05D000469 ORTHO05D000323 2.4e-10 70.1 135 40.0
Ca_05105_v3 Cicer arietinum L. HOM05D000469 ORTHO05D000323 3.1e-10 69.7 124 41.1
Haze_11603 Corylus avellana HOM05D000469 ORTHO05D000323 4.1e-10 69.3 120 40.8
Nn1g07856 Nelumbo nucifera HOM05D000469 ORTHO05D000323 5.3e-10 68.9 66 60.6
Prupe.1G006600 Prunus persica HOM05D000469 ORTHO05D000323 6.9e-10 68.6 134 35.8
COL.COLO4_10273 Corchorus olitorius HOM05D000469 ORTHO05D000323 9.0e-10 68.2 116 44.8
TAR365G0065 Trochodendron aralioides HOM05D000469 ORTHO05D000323 9.0e-10 68.2 93 46.2
CSS0005073 Camellia sinensis var. sinensis HOM05D000469 ORTHO05D000323 1.2e-09 67.8 179 33.5
Ciclev10005031m.g Citrus clementina HOM05D000469 ORTHO05D000323 1.2e-09 67.8 121 39.7
Psat0s3505g0040 Pisum sativum HOM05D000469 ORTHO05D000323 1.2e-09 67.8 157 35.0
TWI09G1147 Tripterygium wilfordii HOM05D000469 ORTHO05D000323 1.2e-09 67.8 120 40.0
TAR636G1497 Trochodendron aralioides HOM05D000469 ORTHO05D000323 1.5e-09 67.4 140 37.1
arahy.Tifrunner.gnm1.ann1.H4P5M1 Arachis hypogaea HOM05D000469 ORTHO05D000323 2.6e-09 66.6 49 65.3
arahy.Tifrunner.gnm1.ann1.LE4XQH Arachis hypogaea HOM05D000469 ORTHO05D000323 2.6e-09 66.6 49 65.3
ECA238G0939 Erigeron canadensis HOM05D000469 ORTHO05D000323 2.6e-09 66.6 121 38.8
TWI73G1139 Tripterygium wilfordii HOM05D000469 ORTHO05D000323 2.6e-09 66.6 96 44.8
Oeu018222.2 Olea europaea HOM05D000469 ORTHO05D000323 3.4e-09 66.2 118 39.8
Lsat_1_v5_gn_2_44720 Lactuca sativa HOM05D000469 ORTHO05D000323 4.5e-09 65.9 140 34.3
Nitab4.5_0002260g0010 Nicotiana tabacum HOM05D000469 ORTHO05D000323 4.5e-09 65.9 152 34.2
Hma1.2p1_0187F.1_g082060 Hydrangea macrophylla HOM05D000469 ORTHO05D000323 5.9e-09 65.5 114 37.7
Dinv38242 Davidia involucrata HOM05D000469 ORTHO05D000323 7.6e-09 65.1 172 36.0
Cpa.g.sc59.132 Carica papaya HOM05D000469 ORTHO05D000323 1.0e-08 64.7 130 38.5
FAN17G1720 Fragaria x ananassa HOM05D000469 ORTHO05D000323 1.0e-08 64.7 121 43.0
Glyma.02G129100 Glycine max HOM05D000469 ORTHO05D000323 1.0e-08 64.7 136 40.4
Actinidia37007 Actinidia chinensis HOM05D000469 ORTHO05D000323 1.3e-08 64.3 48 62.5
PGR083G2370 Punica granatum HOM05D000469 ORTHO05D000323 2.2e-08 63.5 173 35.3
Nn3g19966 Nelumbo nucifera HOM05D000469 ORTHO05D000323 3.8e-08 62.8 179 34.1
SGA_v2.0_scaffold57G20124 Striga asiatica HOM05D000469 ORTHO05D000323 3.8e-08 62.8 59 54.2
QL06p024336 Quercus lobata HOM05D000469 ORTHO05D000323 5.0e-08 62.4 160 33.8
Sabra16G0198900 Salix brachista HOM05D000469 ORTHO05D000323 5.0e-08 62.4 177 33.9
Nitab4.5_0003502g0010 Nicotiana tabacum HOM05D000469 ORTHO05D000323 6.5e-08 62.0 165 33.3
Actinidia35869 Actinidia chinensis HOM05D000469 ORTHO05D000323 1.1e-07 61.2 47 59.6
Glyma.01G093400 Glycine max HOM05D000469 ORTHO05D000323 1.9e-07 60.5 186 33.9
CANSAT78G0913 Cannabis sativa HOM05D000469 ORTHO05D000323 2.5e-07 60.1 48 60.4
Dinv29589 Davidia involucrata HOM05D000469 ORTHO05D000323 3.2e-07 59.7 139 36.7
Migut.G00674 Erythranthe guttata HOM05D000469 ORTHO05D000323 4.2e-07 59.3 122 37.7
MELO3C006315.2 Cucumis melo HOM05D000469 ORTHO05D000323 7.2e-07 58.5 77 42.9
CAN.G765.19 Capsicum annuum HOM05D000469 ORTHO05D000323 9.3e-07 58.2 95 44.2
ClCG05G003350 Citrullus lanatus HOM05D000469 ORTHO05D000323 1.6e-06 57.4 44 61.4
CsaV3_3G011010 Cucumis sativus L. HOM05D000469 ORTHO05D000323 1.6e-06 57.4 110 37.3
AUR62020815 Chenopodium quinoa HOM05D000469 ORTHO05D000323 2.7e-06 56.6 71 46.5
SalBow8G4815 Salvia bowleyana HOM05D000469 ORTHO05D000323 3.6e-06 56.2 162 32.1
Sed0018555 Sechium edule HOM05D000469 ORTHO05D000323 3.6e-06 56.2 47 55.3
Eucgr.H02788 Eucalyptus grandis HOM05D000469 ORTHO05D000323 4.6e-06 55.8 111 36.0
Medtr0194s0050 Medicago truncatula HOM05D000469 ORTHO05D000323 4.6e-06 55.8 170 32.4
EL10Ac4g09031 Beta vulgaris HOM05D000469 ORTHO05D000323 7.9e-06 55.1 75 44.0


User provided reference genes

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