Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 1.4e-151 539.7 291 100.0
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 1.4e-151 539.7 291 100.0
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 4.2e-151 538.1 291 99.7
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 1.2e-147 526.6 291 98.3
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 3.6e-147 525.0 291 97.9
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 8.4e-144 513.8 291 96.2
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 3.3e-140 501.9 293 92.5
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 8.4e-136 487.3 292 91.4
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 9.3e-135 483.8 294 91.2
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 6.0e-134 481.1 291 90.4
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 3.0e-133 478.8 296 89.9
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 6.7e-133 477.6 291 89.7
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 2.5e-132 475.7 298 87.2
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 6.9e-130 467.6 299 87.0
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 1.0e-125 453.8 296 87.8
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 6.7e-125 451.1 298 84.2
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 2.4e-122 442.6 294 85.4
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 2.4e-114 416.0 300 78.0
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 9.7e-108 394.0 293 78.8
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.4e-103 380.2 262 80.2
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 1.4e-101 373.6 295 72.5
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 9.7e-100 367.5 295 71.9
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 2.8e-99 365.9 296 70.9
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.4e-98 363.6 295 70.2
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 4.1e-98 362.1 297 71.0
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 6.5e-96 354.8 300 69.0
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 8.5e-96 354.4 297 68.4
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 1.1e-95 354.0 300 67.0
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 3.2e-95 352.4 296 67.6
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 4.7e-94 348.6 294 66.0
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 8.0e-94 347.8 296 67.2
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 1.0e-93 347.4 296 67.2
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 3.0e-93 345.9 296 67.2
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 2.0e-92 343.2 291 68.0
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 5.7e-92 341.7 299 65.2
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 9.7e-92 340.9 260 71.5
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 1.7e-91 340.1 298 65.8
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 2.2e-91 339.7 297 65.7
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 2.2e-91 339.7 296 66.6
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 3.7e-91 339.0 297 66.3
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 6.3e-91 338.2 297 66.3
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 1.1e-90 337.4 297 66.3
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.4e-90 337.0 294 65.0
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 1.4e-90 337.0 296 66.9
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.8e-90 336.7 294 65.0
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.8e-90 336.7 294 65.3
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 1.8e-90 336.7 291 65.6
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 3.1e-90 335.9 292 66.4
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 7.0e-90 334.7 297 64.0
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 7.0e-90 334.7 300 65.0
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 1.2e-89 334.0 292 66.8
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.6e-89 333.6 294 64.3
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 2.0e-89 333.2 298 63.4
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 4.5e-89 332.0 294 63.9
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 1.0e-88 330.9 295 65.8
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 2.9e-88 329.3 296 65.9
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 2.9e-88 329.3 296 65.9
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 5.0e-88 328.6 304 62.8
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 1.1e-87 327.4 292 63.7
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 3.2e-87 325.9 259 70.3
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 3.2e-87 325.9 298 64.1
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 7.2e-87 324.7 297 64.3
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 1.6e-86 323.6 256 70.7
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 2.1e-86 323.2 297 64.3
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 8.0e-86 321.2 299 61.9
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 1.0e-85 320.9 301 62.5
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 1.4e-85 320.5 295 64.7
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 3.0e-85 319.3 312 60.9
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 6.7e-85 318.2 323 61.0
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 6.7e-85 318.2 299 61.9
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 1.5e-84 317.0 268 66.4
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 5.7e-84 315.1 333 58.0
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 7.5e-84 314.7 297 62.6
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 2.8e-83 312.8 293 61.4
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 3.1e-82 309.3 312 58.3
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 4.1e-82 308.9 362 54.4
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 4.1e-82 308.9 299 61.9
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 5.3e-82 308.5 307 59.3
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 7.0e-82 308.1 291 61.5
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 5.9e-81 305.1 292 60.6
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 1.0e-80 304.3 325 56.9
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 3.8e-80 302.4 305 60.3
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 1.6e-78 297.0 297 59.9
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 3.6e-78 295.8 228 72.4
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 6.1e-78 295.0 297 59.9
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 6.1e-78 295.0 254 63.0
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 4.0e-77 292.4 299 60.5
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 6.8e-77 291.6 389 49.6
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 1.7e-75 287.0 303 59.4
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 2.8e-75 286.2 254 62.6
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 2.8e-75 286.2 256 63.3
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 1.4e-74 283.9 373 50.1
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 2.4e-74 283.1 298 58.7
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 4.1e-74 282.3 249 63.1
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 4.1e-74 282.3 292 57.9
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 4.1e-74 282.3 298 58.7
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 4.1e-74 282.3 250 64.0
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 3.5e-73 279.3 300 58.3
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 1.0e-72 277.7 389 48.3
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 1.7e-72 276.9 250 64.0
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 6.6e-72 275.0 300 58.0
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 1.1e-71 274.2 250 61.2
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 1.5e-68 263.8 221 66.5
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 9.8e-68 261.2 298 55.4
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 1.4e-66 257.3 296 54.4
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 3.3e-63 246.1 238 61.3
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 9.5e-63 244.6 201 71.1
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 1.4e-61 240.7 249 53.4
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 5.4e-58 228.8 214 61.2
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 6.2e-54 215.3 184 68.5
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 5.2e-53 212.2 173 68.2
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 5.2e-53 212.2 304 49.3
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 5.1e-48 195.7 183 61.2
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 1.9e-47 193.7 272 46.3
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 1.8e-45 187.2 236 45.3
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 2.3e-45 186.8 239 44.8
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 2.9e-43 179.9 181 62.4
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 2.4e-42 176.8 225 46.2
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 7.1e-42 175.3 240 45.0
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 6.2e-38 162.2 116 75.9
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 4.9e-35 152.5 230 42.6
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 4.2e-34 149.4 162 54.9
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 2.1e-33 147.1 243 37.0
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 1.1e-29 134.8 182 52.7
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 9.0e-29 131.7 122 61.5
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 7.6e-28 128.6 119 63.0
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 1.3e-27 127.9 155 52.3
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 3.2e-26 123.2 130 56.2
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 2.3e-24 117.1 118 54.2
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 6.6e-24 115.5 174 44.3
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 2.5e-23 113.6 234 33.3
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 1.5e-20 104.4 82 70.7
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 3.8e-19 99.8 105 53.3
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 3.8e-19 99.8 105 53.3
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 5.4e-18 95.9 105 52.4
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 3.7e-14 83.2 102 52.9
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 5.8e-12 75.9 62 62.9
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 1.3e-11 74.7 215 27.0
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 6.0e-09 65.9 210 28.1
Aa31LG8G9420 Aethionema arabicum HOM05D005102 ORTHO05D006090 7.9e-09 65.5 63 63.5
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 6.7e-08 62.4 51 62.7
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 6.7e-08 62.4 51 62.7
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 6.7e-08 62.4 51 62.7
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 6.7e-08 62.4 51 62.7
MCO03G437 Micromonas commoda HOM05D005102 ORTHO05D006090 1.5e-07 61.2 220 29.5


User provided reference genes

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