Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 0.0e+00 1077.8 675 100.0
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 3.4e-305 1051.2 675 94.7
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 1.3e-285 986.1 679 91.2
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 6.7e-253 877.5 742 79.4
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 3.1e-250 868.6 675 84.1
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 4.1e-250 868.2 755 72.5
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 8.5e-240 833.9 648 86.9
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 1.7e-219 766.5 567 85.2
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 3.1e-218 762.3 735 74.6
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 7.3e-199 698.0 720 68.5
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 8.9e-197 691.0 740 66.9
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 1.4e-194 683.7 725 70.3
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 1.0e-192 677.6 734 67.6
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 1.1e-191 674.1 739 68.7
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 6.2e-190 668.3 715 70.9
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 4.0e-189 665.6 728 69.0
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 3.8e-179 632.5 748 68.3
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 6.9e-173 611.7 700 65.3
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 6.0e-153 545.4 710 60.4
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 1.1e-146 524.6 574 69.0
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 6.0e-145 518.8 740 53.9
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.8e-136 490.7 747 49.0
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 6.3e-126 455.7 572 61.2
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 2.6e-124 450.3 569 60.6
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 4.0e-96 356.7 625 42.7
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 9.8e-95 352.1 642 46.7
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 3.7e-94 350.1 633 46.4
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 3.7e-94 350.1 556 45.0
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 5.9e-92 342.8 451 49.7
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 8.6e-91 339.0 609 42.2
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 3.3e-90 337.0 667 48.6
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 4.3e-90 336.7 574 44.9
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 9.5e-90 335.5 584 50.2
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 9.5e-90 335.5 767 44.1
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 1.6e-89 334.7 490 50.4
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 3.6e-89 333.6 525 44.6
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 8.0e-89 332.4 628 43.6
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 1.0e-88 332.0 637 41.3
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 1.0e-88 332.0 658 43.3
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 2.3e-88 330.9 629 41.8
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 6.8e-88 329.3 661 45.7
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 2.0e-87 327.8 736 44.3
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 3.4e-87 327.0 437 53.3
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 4.4e-87 326.6 498 44.0
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 1.3e-86 325.1 673 40.7
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.7e-86 324.7 669 47.1
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 1.7e-86 324.7 619 40.9
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 1.7e-86 324.7 523 45.3
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 3.7e-86 323.6 672 41.4
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 8.3e-86 322.4 655 40.5
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 1.1e-85 322.0 651 40.4
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.6e-84 318.2 617 41.0
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.3e-83 314.3 760 37.5
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 3.9e-83 313.5 671 41.9
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 6.6e-83 312.8 632 40.5
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 1.5e-82 311.6 779 43.5
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 7.3e-82 309.3 760 37.8
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 1.2e-81 308.5 614 45.1
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 2.1e-81 307.8 610 42.0
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 2.1e-81 307.8 634 44.8
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.8e-80 304.7 755 40.4
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 2.3e-80 304.3 492 54.1
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 5.2e-80 303.1 609 45.6
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 6.8e-80 302.8 542 41.9
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 3.4e-79 300.4 542 41.7
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 1.3e-78 298.5 658 39.1
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 3.7e-78 297.0 664 45.2
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 3.7e-78 297.0 647 37.9
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 8.3e-78 295.8 653 38.6
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.2e-77 293.9 625 39.2
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 5.4e-77 293.1 493 50.5
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 9.2e-77 292.4 489 50.7
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 2.0e-76 291.2 631 37.9
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 2.7e-76 290.8 748 36.2
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.5e-76 290.4 631 39.9
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 6.0e-76 289.7 644 42.7
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 7.8e-76 289.3 398 46.5
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 7.8e-76 289.3 706 40.8
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 1.0e-75 288.9 681 42.0
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.7e-75 288.1 646 37.5
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 3.0e-75 287.3 609 37.3
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 8.6e-75 285.8 675 37.0
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 8.6e-75 285.8 688 43.3
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 8.6e-75 285.8 675 43.3
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.1e-74 285.4 766 36.8
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 1.1e-74 285.4 649 44.7
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.6e-74 283.1 765 36.2
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 9.5e-74 282.3 641 38.4
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 1.2e-73 282.0 685 43.4
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 1.6e-73 281.6 525 38.9
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.8e-73 280.8 735 37.0
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 2.8e-73 280.8 615 37.9
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 4.7e-73 280.0 611 39.1
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 6.2e-73 279.6 650 37.8
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.1e-72 278.9 754 37.3
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 1.4e-72 278.5 604 37.9
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 1.8e-72 278.1 652 37.9
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.0e-72 276.9 756 38.2
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 6.8e-72 276.2 574 38.5
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 1.2e-71 275.4 749 39.1
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 1.2e-71 275.4 669 42.8
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 1.5e-71 275.0 483 51.3
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.0e-71 274.6 646 42.1
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 2.0e-71 274.6 528 48.1
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 3.4e-71 273.9 642 36.9
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 4.4e-71 273.5 685 41.8
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 7.5e-71 272.7 495 50.9
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 9.9e-71 272.3 697 44.3
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 1.3e-70 271.9 635 45.2
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 2.2e-70 271.2 644 37.7
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 8.3e-70 269.2 654 43.3
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.1e-69 268.9 653 41.8
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 3.2e-69 267.3 478 41.8
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 4.1e-69 266.9 625 45.8
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 5.4e-69 266.5 550 38.0
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 1.6e-68 265.0 768 34.2
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 1.5e-66 258.5 658 39.5
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 7.3e-66 256.1 660 38.6
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 1.4e-64 251.9 635 35.6
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 5.2e-64 250.0 647 42.5
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 2.2e-62 244.6 653 42.3
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.4e-61 241.9 629 42.3
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 1.6e-60 238.4 657 42.6
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 1.6e-60 238.4 628 43.3
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 4.6e-60 236.9 300 49.0
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 2.3e-59 234.6 764 34.7
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 3.1e-56 224.2 619 41.5
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 4.2e-53 213.8 567 40.6
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 6.0e-52 209.9 393 43.8
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 3.0e-51 207.6 825 29.1
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 6.9e-48 196.4 525 38.7
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 1.1e-45 189.1 526 39.9
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 1.9e-45 188.3 163 61.3
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.8e-40 171.8 324 49.7
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 2.3e-35 154.8 114 71.1
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 2.1e-33 148.3 108 73.1
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 2.1e-33 148.3 406 35.5
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 3.1e-32 144.4 549 29.7
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 5.3e-32 143.7 423 31.4
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 4.9e-30 137.1 389 42.9
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 6.5e-30 136.7 424 29.5
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 1.1e-29 136.0 138 56.5
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 1.6e-28 132.1 100 71.0
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.3e-25 122.5 420 28.6
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 2.8e-25 121.3 535 28.0
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 7.6e-23 113.2 87 70.1
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 7.6e-23 113.2 378 34.9
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 1.1e-18 99.4 603 24.5
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.7e-17 94.4 74 68.9
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 3.1e-16 91.3 444 25.7
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 4.1e-16 90.9 71 69.0
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.9e-16 90.1 66 71.2
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 2.9e-14 84.7 56 73.2
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 3.8e-14 84.3 78 57.7
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 5.0e-14 84.0 90 54.4
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 1.9e-13 82.0 291 31.3
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 3.6e-12 77.8 49 81.6
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 3.9e-11 74.3 63 65.1
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.8e-09 68.2 54 66.7
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 6.3e-09 67.0 54 66.7
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.1e-08 66.2 46 73.9
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 2.4e-08 65.1 93 41.9
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.4e-08 65.1 50 68.0
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.1e-08 64.7 46 71.7
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.3e-08 63.9 47 72.3
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 7.0e-08 63.5 50 66.0
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 1.5e-07 62.4 79 46.8
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 2.6e-07 61.6 46 67.4
AL5G30090 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 1.0e-06 59.7 41 82.9
Gohir.D06G132966 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.3e-06 59.3 37 81.1
Gorai.010G154900 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.7e-06 58.9 37 81.1
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.5e-06 57.0 39 74.4
Gohir.D02G158575 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.5e-06 57.0 37 75.7


User provided reference genes

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