Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35658 Brassica carinata HOM05D010891 ORTHO05D014503 0.0e+00 1386.7 692 100.0
BolC1t04446H Brassica oleracea HOM05D010891 ORTHO05D014503 8.8e-67 259.2 507 34.5
BolC1t02316H Brassica oleracea HOM05D010891 ORTHO05D014503 1.1e-64 252.3 518 33.6
BcaC07g37860 Brassica carinata HOM05D010891 ORTHO05D095880 9.2e-64 249.2 377 43.0
BolC4t23309H Brassica oleracea HOM05D010891 ORTHO05D014503 7.3e-53 213.0 295 43.7
BcaB03g16834 Brassica carinata HOM05D010891 ORTHO05D014503 8.0e-52 209.5 272 50.4
BraA05t21125Z Brassica rapa HOM05D010891 ORTHO05D014503 1.2e-47 195.7 224 50.4
BcaB03g16873 Brassica carinata HOM05D010891 ORTHO05D014503 9.5e-45 186.0 154 64.9
BolC4t24362H Brassica oleracea HOM05D010891 ORTHO05D014503 1.1e-40 172.6 257 42.8
BolC5t32060H Brassica oleracea HOM05D010891 ORTHO05D014503 1.9e-37 161.8 504 31.3
BraA09t38626Z Brassica rapa HOM05D009262 ORTHO05D011562 3.3e-29 134.4 144 50.0
BraA09t39432Z Brassica rapa HOM05D010891 ORTHO05D014503 2.6e-26 124.8 228 36.0
BolC4t23194H Brassica oleracea HOM05D010891 ORTHO05D014503 7.3e-21 106.7 288 28.8
AT4G07350 Arabidopsis thaliana HOM05D040730 ORTHO05D019747 5.3e-19 100.5 114 43.0
BolC1t01786H Brassica oleracea HOM05D010891 ORTHO05D014503 1.3e-17 95.9 108 41.7
BraA05t21124Z Brassica rapa HOM05D042296 ORTHO05D033828 6.4e-17 93.6 115 48.7
BraA05t21127Z Brassica rapa HOM05D042296 ORTHO05D033828 6.4e-17 93.6 115 48.7
Carub.0002s0978 Capsella rubella HOM05D029864 ORTHO05D031471 7.1e-16 90.1 106 37.7
BcaC01g03557 Brassica carinata HOM05D013010 ORTHO05D018622 1.2e-15 89.4 122 38.5
BraA01t02538Z Brassica rapa HOM05D009262 ORTHO05D011562 2.1e-15 88.6 55 78.2
BraA01t02539Z Brassica rapa HOM05D009262 ORTHO05D011562 6.0e-15 87.0 50 82.0
Carub.0008s0740 Capsella rubella HOM05D040730 ORTHO05D019747 7.9e-15 86.7 115 42.6
BcaC05g27536 Brassica carinata HOM05D013010 ORTHO05D018622 1.3e-14 85.9 147 36.7
AT1G40129 Arabidopsis thaliana HOM05D040730 ORTHO05D019747 1.1e-13 82.8 240 27.5
BraA01t02922Z Brassica rapa HOM05D013010 ORTHO05D018622 2.5e-13 81.6 308 29.2
BcaC09g48884 Brassica carinata HOM05D010891 ORTHO05D014503 2.8e-12 78.2 186 31.2
C01p32740 Brassica napus HOM05D065456 ORTHO05D019747 3.7e-12 77.8 61 54.1
BcaC09g49810 Brassica carinata HOM05D065456 ORTHO05D019747 8.1e-12 76.6 61 52.5
Carub.0005s0886 Capsella rubella HOM05D019020 ORTHO05D019740 1.1e-11 76.3 83 53.0
BcaB08g35323 Brassica carinata HOM05D000975 ORTHO05D003128 1.8e-11 75.5 96 46.9
AL2G24450 Arabidopsis lyrata HOM05D024632 ORTHO05D031429 6.9e-11 73.6 87 41.4
AT2G15180 Arabidopsis thaliana HOM05D028022 ORTHO05D031453 9.0e-11 73.2 300 25.7
CARHR293290 Cardamine hirsuta HOM05D025009 ORTHO05D017565 1.5e-10 72.4 187 27.8
BNapus_Darmor_BZH_scaffold_51p00050 Brassica napus HOM05D008465 ORTHO05D010905 2.6e-10 71.6 61 45.9
Sp7g10650 Schrenkiella parvula HOM05D010153 ORTHO05D012295 4.5e-10 70.9 202 28.7
Carub.0003s2744 Capsella rubella HOM05D019020 ORTHO05D019740 4.9e-09 67.4 76 55.3
THA.LOC109117272 Tarenaya hassleriana HOM05D028373 ORTHO05D000563 2.4e-08 65.1 82 39.0
THA.LOC104825361 Tarenaya hassleriana HOM05D000004 ORTHO05D000002 3.2e-08 64.7 97 35.1
Sp6g10890 Schrenkiella parvula HOM05D010891 ORTHO05D014503 4.2e-08 64.3 76 47.4
THA.LOC104815406 Tarenaya hassleriana HOM05D000004 ORTHO05D000563 7.1e-08 63.5 89 37.1
BolC8t47680H Brassica oleracea HOM05D042296 ORTHO05D033828 9.3e-08 63.2 51 58.8
THA.LOC104808429 Tarenaya hassleriana HOM05D010409 ORTHO05D000563 1.2e-07 62.8 111 33.3
THA.LOC104809166 Tarenaya hassleriana HOM05D000004 ORTHO05D000002 1.2e-07 62.8 82 37.8
BraA05t21128Z Brassica rapa HOM05D010891 ORTHO05D043129 1.6e-07 62.4 102 41.2
THA.LOC104814125 Tarenaya hassleriana HOM05D000004 ORTHO05D000002 1.6e-07 62.4 114 32.5
THA.LOC109117145 Tarenaya hassleriana HOM05D000004 ORTHO05D000563 1.6e-07 62.4 114 32.5
BolC8t47681H Brassica oleracea HOM05D010891 ORTHO05D043129 2.7e-07 61.6 103 41.7
THA.LOC104807077 Tarenaya hassleriana HOM05D000004 ORTHO05D000002 2.7e-07 61.6 105 34.3
C07p11190 Brassica napus HOM05D013010 ORTHO05D018622 3.5e-07 61.2 151 29.1
THA.LOC104821189 Tarenaya hassleriana HOM05D000004 ORTHO05D000563 3.5e-07 61.2 82 37.8
THA.LOC109115993 Tarenaya hassleriana HOM05D000004 ORTHO05D000002 3.5e-07 61.2 91 33.0
Sp3g24010 Schrenkiella parvula HOM05D010153 ORTHO05D012295 7.9e-07 60.1 138 29.7
THA.LOC104807982 Tarenaya hassleriana HOM05D000004 ORTHO05D000563 7.9e-07 60.1 89 36.0
C02p37560 Brassica napus HOM05D019037 ORTHO05D103407 1.3e-06 59.3 39 71.8
SpUn0675_0010 Schrenkiella parvula HOM05D010775 ORTHO05D017595 1.3e-06 59.3 112 32.1
BcaC03g17355 Brassica carinata HOM05D025009 ORTHO05D017565 2.3e-06 58.5 103 32.0
THA.LOC104804981 Tarenaya hassleriana HOM05D000004 ORTHO05D000002 2.3e-06 58.5 192 24.5
THA.LOC109116070 Tarenaya hassleriana HOM05D000004 ORTHO05D000563 3.9e-06 57.8 263 23.2
BcaC05g27419 Brassica carinata HOM05D025009 ORTHO05D017565 5.1e-06 57.4 165 24.8
THA.LOC104821897 Tarenaya hassleriana HOM05D000004 ORTHO05D000002 5.1e-06 57.4 80 33.8
TPR.G29503 Trifolium pratense HOM05D000004 ORTHO05D000002 5.1e-06 57.4 97 29.9
THA.LOC109115991 Tarenaya hassleriana HOM05D000004 ORTHO05D000002 6.7e-06 57.0 89 31.5


User provided reference genes

Program Settings