Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35634 Brassica carinata HOM05D004974 ORTHO05D001537 1.8e-57 225.7 116 100.0
C07p01960 Brassica napus HOM05D004974 ORTHO05D001537 3.8e-47 191.4 180 63.9
BolC7t41758H Brassica oleracea HOM05D004974 ORTHO05D001537 1.1e-46 189.9 180 63.3
BcaC06g36634 Brassica carinata HOM05D004974 ORTHO05D001537 1.4e-46 189.5 175 64.6
BolC7t40605H Brassica oleracea HOM05D004974 ORTHO05D001537 1.4e-46 189.5 175 64.6
C07p12710 Brassica napus HOM05D004974 ORTHO05D001537 1.2e-40 169.9 166 61.4
A03p35060 Brassica napus HOM05D004974 ORTHO05D001537 1.5e-40 169.5 178 57.9
BraA03t12686Z Brassica rapa HOM05D004974 ORTHO05D001537 1.5e-40 169.5 178 57.9
C03p42640 Brassica napus HOM05D004974 ORTHO05D001537 3.8e-39 164.9 178 56.7
C05p60300 Brassica napus HOM05D004974 ORTHO05D001537 6.5e-39 164.1 180 57.8
Thhalv10020757m.g Eutrema salsugineum HOM05D004974 ORTHO05D001537 6.5e-39 164.1 177 57.6
Carub.0003s0659 Capsella rubella HOM05D004974 ORTHO05D001537 1.6e-37 159.5 177 55.4
Sp3g06020 Schrenkiella parvula HOM05D004974 ORTHO05D001537 1.6e-37 159.5 177 58.2
AT3G07080 Arabidopsis thaliana HOM05D004974 ORTHO05D001537 5.1e-36 154.5 175 54.9
AL3G18310 Arabidopsis lyrata HOM05D004974 ORTHO05D001537 1.5e-35 152.9 175 54.3
CARHR081670 Cardamine hirsuta HOM05D004974 ORTHO05D001537 1.3e-34 149.8 178 54.5
BolC3t16534H Brassica oleracea HOM05D004974 ORTHO05D001537 1.1e-33 146.7 178 52.8
BraA01t04399Z Brassica rapa HOM05D004974 ORTHO05D001537 1.5e-30 136.3 74 93.2
BolC5t34678H Brassica oleracea HOM05D004974 ORTHO05D001537 1.0e-28 130.2 77 89.6
BcaC09g47938 Brassica carinata HOM05D004974 ORTHO05D001537 3.0e-28 128.6 74 87.8
BolC1t05570H Brassica oleracea HOM05D004974 ORTHO05D001537 3.0e-28 128.6 74 87.8
Atru.chr5.2001 Acer truncatum HOM05D004974 ORTHO05D001537 1.1e-25 120.2 76 78.9
Aa31LG5G17640 Aethionema arabicum HOM05D004974 ORTHO05D001537 2.4e-25 119.0 75 81.3
Dinv19208 Davidia involucrata HOM05D004974 ORTHO05D000168 7.0e-25 117.5 74 81.1
PGR044G1568 Punica granatum HOM05D004974 ORTHO05D001537 3.5e-24 115.2 74 78.4
THA.LOC104802676 Tarenaya hassleriana HOM05D004974 ORTHO05D001537 3.5e-24 115.2 75 78.7
Duzib133G1519 Durio zibethinus HOM05D004974 ORTHO05D001537 7.7e-24 114.0 74 75.7
arahy.Tifrunner.gnm1.ann1.7S1X7X Arachis hypogaea HOM05D004974 ORTHO05D001537 1.3e-23 113.2 74 77.0
arahy.Tifrunner.gnm1.ann1.GEM3QE Arachis hypogaea HOM05D004974 ORTHO05D001537 1.3e-23 113.2 74 77.0
Actinidia09484 Actinidia chinensis HOM05D000836 ORTHO05D000709 2.2e-23 112.5 74 75.7
Glyma.08G354800 Glycine max HOM05D004974 ORTHO05D001537 2.9e-23 112.1 74 75.7
THA.LOC104818948 Tarenaya hassleriana HOM05D004974 ORTHO05D001537 2.9e-23 112.1 74 75.7
GSVIVG01028650001 Vitis vinifera HOM05D004974 ORTHO05D001537 2.9e-23 112.1 74 77.0
Ciclev10020126m.g Citrus clementina HOM05D004974 ORTHO05D001537 6.5e-23 110.9 74 77.0
Nitab4.5_0000045g0090 Nicotiana tabacum HOM05D004974 ORTHO05D001537 6.5e-23 110.9 75 73.3
Nitab4.5_0006192g0010 Nicotiana tabacum HOM05D004974 ORTHO05D001537 6.5e-23 110.9 75 73.3
Aqoxy2G03888 Aquilegia oxysepala HOM05D004974 ORTHO05D001537 1.5e-22 109.8 75 72.0
Gohir.A11G137200 Gossypium hirsutum HOM05D004974 ORTHO05D001537 1.5e-22 109.8 75 70.7
Gohir.D11G143600 Gossypium hirsutum HOM05D004974 ORTHO05D001537 1.5e-22 109.8 75 70.7
Gorai.007G153800 Gossypium raimondii HOM05D004974 ORTHO05D001537 1.5e-22 109.8 75 70.7
Oeu022257.1 Olea europaea HOM05D004974 ORTHO05D001537 2.5e-22 109.0 76 75.0
Actinidia30081 Actinidia chinensis HOM05D004974 ORTHO05D001537 3.2e-22 108.6 75 74.7
CSS0031489 Camellia sinensis var. sinensis HOM05D004974 ORTHO05D001537 3.2e-22 108.6 75 74.7
Rhsim01G0256000 Rhododendron simsii HOM05D004974 ORTHO05D001537 3.2e-22 108.6 74 74.3
TWI36G0218 Tripterygium wilfordii HOM05D004974 ORTHO05D001537 3.2e-22 108.6 74 74.3
TAR365G0028 Trochodendron aralioides HOM05D004974 ORTHO05D001537 3.2e-22 108.6 74 71.6
TWI18G1322 Tripterygium wilfordii HOM05D004974 ORTHO05D001537 4.2e-22 108.2 74 74.3
Psat3g144880 Pisum sativum HOM05D004974 ORTHO05D001537 5.5e-22 107.8 74 74.3
Rhsim13G0044600 Rhododendron simsii HOM05D004974 ORTHO05D001537 5.5e-22 107.8 74 75.7
CSS0012166 Camellia sinensis var. sinensis HOM05D004974 ORTHO05D001537 7.2e-22 107.5 75 74.7
Lj1g0028171 Lotus japonicus HOM05D004974 ORTHO05D001537 7.2e-22 107.5 74 74.3
PSO063G7040 Papaver somniferum HOM05D004974 ORTHO05D001537 7.2e-22 107.5 76 71.1
Solyc09g061320.4 Solanum lycopersicum HOM05D004974 ORTHO05D001537 7.2e-22 107.5 74 71.6
Sopen09g024080 Solanum pennellii HOM05D004974 ORTHO05D001537 7.2e-22 107.5 74 71.6
Thecc.01G226800 Theobroma cacao HOM05D004974 ORTHO05D001537 9.4e-22 107.1 74 71.6
TPR.G9031 Trifolium pratense HOM05D004974 ORTHO05D001537 9.4e-22 107.1 74 73.0
VMungo1383G2852 Vigna mungo HOM05D004974 ORTHO05D001537 9.4e-22 107.1 74 73.0
Nn1g07839 Nelumbo nucifera HOM05D004974 ORTHO05D001537 1.2e-21 106.7 75 73.3
Nn4g24998 Nelumbo nucifera HOM05D004974 ORTHO05D001537 1.2e-21 106.7 75 68.0
Sc17g0002410 Simmondsia chinensis HOM05D004974 ORTHO05D001537 1.2e-21 106.7 74 75.7
Eucgr.G01752 Eucalyptus grandis HOM05D004974 ORTHO05D001537 1.6e-21 106.3 74 71.6
Medtr7g058520 Medicago truncatula HOM05D004974 ORTHO05D001537 1.6e-21 106.3 74 73.0
PSO017G1462 Papaver somniferum HOM05D004974 ORTHO05D001537 1.6e-21 106.3 76 69.7
Cpa.g.sc8.163 Carica papaya HOM05D004974 ORTHO05D001537 2.1e-21 105.9 74 73.0
Lalb_Chr01g0022381 Lupinus albus HOM05D004974 ORTHO05D001537 2.1e-21 105.9 74 71.6
CAN.G900.32 Capsicum annuum HOM05D004974 ORTHO05D001537 2.7e-21 105.5 74 68.9
ATR0736G069 Amborella trichopoda HOM05D004974 ORTHO05D001537 3.6e-21 105.1 74 71.6
Ca_07523_v3 Cicer arietinum L. HOM05D004974 ORTHO05D001537 3.6e-21 105.1 74 71.6
COL.COLO4_08178 Corchorus olitorius HOM05D004974 ORTHO05D001537 3.6e-21 105.1 75 74.7
Hund18374 Selenicereus undatus HOM05D004974 ORTHO05D001537 3.6e-21 105.1 75 73.3
Lalb_Chr03g0041801 Lupinus albus HOM05D004974 ORTHO05D001537 4.7e-21 104.8 74 68.9
Peaxi162Scf00107g00164 Petunia axillaris HOM05D004974 ORTHO05D001537 4.7e-21 104.8 77 70.1
CDE08G1692 Ceratophyllum demersum HOM05D004974 ORTHO05D001537 6.1e-21 104.4 74 67.6
FvH4_2g19180 Fragaria vesca HOM05D004974 ORTHO05D001537 6.1e-21 104.4 76 73.7
FAN15G2952 Fragaria x ananassa HOM05D004974 ORTHO05D001537 6.1e-21 104.4 76 73.7
FAN24G0854 Fragaria x ananassa HOM05D004974 ORTHO05D001537 6.1e-21 104.4 76 73.7
MBI10_g47169_MAGBIO Magnolia biondii HOM05D004974 ORTHO05D001537 8.0e-21 104.0 75 69.3
CsaV3_3G029890 Cucumis sativus L. HOM05D004974 ORTHO05D001537 1.0e-20 103.6 74 70.3
MD04G1105300 Malus domestica HOM05D004974 ORTHO05D001537 1.0e-20 103.6 76 72.4
MD10G1165300 Malus domestica HOM05D004974 ORTHO05D001537 1.0e-20 103.6 76 72.4
Phvul.008G125000 Phaseolus vulgaris HOM05D004974 ORTHO05D001537 1.0e-20 103.6 74 71.6
RcHm_v2.0_Chr6g0284971 Rosa chinensis HOM05D004974 ORTHO05D001537 1.0e-20 103.6 75 73.3
PGSC0003DMG400017652 Solanum tuberosum HOM05D004974 ORTHO05D001537 1.0e-20 103.6 108 54.6
EL10Ac3g05326 Beta vulgaris HOM05D004974 ORTHO05D001537 1.4e-20 103.2 74 73.0
HanXRQChr16g0532351 Helianthus annuus HOM05D004974 ORTHO05D001537 1.4e-20 103.2 78 67.9
Lj5g0019880 Lotus japonicus HOM05D004974 ORTHO05D001537 1.8e-20 102.8 74 71.6
MBI16_g31263_MAGBIO Magnolia biondii HOM05D004974 ORTHO05D001537 1.8e-20 102.8 74 66.2
CiPaw.03G150400 Carya illinoinensis HOM05D004974 ORTHO05D001537 2.3e-20 102.4 69 75.4
ClCG07G001900 Citrullus lanatus HOM05D004974 ORTHO05D001537 2.3e-20 102.4 74 70.3
Os06g0681700 Oryza sativa ssp. japonica HOM05D004974 ORTHO05D001537 2.3e-20 102.4 74 70.3
QL09p054677 Quercus lobata HOM05D004974 ORTHO05D001537 3.0e-20 102.1 68 75.0
Prupe.8G203700 Prunus persica HOM05D004974 ORTHO05D001537 4.0e-20 101.7 78 67.9
Zm00001eb273630 Zea mays HOM05D004974 ORTHO05D001537 4.0e-20 101.7 74 68.9
MD05G1176600 Malus domestica HOM05D004974 ORTHO05D001537 5.2e-20 101.3 75 72.0
Sabra14G0144900 Salix brachista HOM05D004974 ORTHO05D001537 5.2e-20 101.3 74 70.3
CDE02G3969 Ceratophyllum demersum HOM05D004974 ORTHO05D001537 6.8e-20 100.9 74 64.9
Manes.13G045300 Manihot esculenta HOM05D004974 ORTHO05D001537 6.8e-20 100.9 74 70.3
EL10Ac7g17825 Beta vulgaris HOM05D004974 ORTHO05D001537 8.8e-20 100.5 74 70.3
Lj2C1132G7 Lonicera japonica HOM05D004974 ORTHO05D000168 8.8e-20 100.5 77 67.5
MSTRG.18386 Avicennia marina HOM05D004974 ORTHO05D001537 1.2e-19 100.1 76 67.1
Migut.D00531 Erythranthe guttata HOM05D004974 ORTHO05D001537 1.2e-19 100.1 76 67.1
Zm00001eb225240 Zea mays HOM05D004974 ORTHO05D001537 1.2e-19 100.1 74 68.9
Sed0026000 Sechium edule HOM05D004974 ORTHO05D001537 1.5e-19 99.8 74 66.2
HPP92_000858 Vanilla planifolia HOM05D004974 ORTHO05D001537 2.0e-19 99.4 74 68.9
MSTRG.21423 Avicennia marina HOM05D004974 ORTHO05D001537 3.4e-19 98.6 76 63.2
vmacro02753 Vaccinium macrocarpon HOM05D004974 ORTHO05D001537 3.4e-19 98.6 87 62.1
VMungo0720G1354 Vigna mungo HOM05D004974 ORTHO05D001537 5.7e-19 97.8 74 67.6
Eucgr.K02174 Eucalyptus grandis HOM05D004974 ORTHO05D001537 9.7e-19 97.1 76 67.1
Eucgr.K02179 Eucalyptus grandis HOM05D004974 ORTHO05D001537 9.7e-19 97.1 76 67.1
Potri.014G189500 Populus trichocarpa HOM05D004974 ORTHO05D001537 9.7e-19 97.1 74 67.6
SalBow1G3148 Salvia bowleyana HOM05D004974 ORTHO05D001537 1.7e-18 96.3 76 65.8
Oeu004060.1 Olea europaea HOM05D004974 ORTHO05D001537 2.2e-18 95.9 81 64.2
Hund05533 Selenicereus undatus HOM05D004974 ORTHO05D001537 2.2e-18 95.9 74 66.2
Hund05537 Selenicereus undatus HOM05D004974 ORTHO05D001537 2.2e-18 95.9 74 66.2
unitig_749.g13727 Utricularia gibba HOM05D004974 ORTHO05D001537 2.2e-18 95.9 76 63.2
AUR62008904 Chenopodium quinoa HOM05D004974 ORTHO05D001537 2.8e-18 95.5 74 66.2
Sed0019567 Sechium edule HOM05D004974 ORTHO05D001537 3.7e-18 95.1 76 67.1
SGA_v2.0_scaffold1G00729 Striga asiatica HOM05D004974 ORTHO05D001537 3.7e-18 95.1 77 62.3
AUR62031806 Chenopodium quinoa HOM05D004974 ORTHO05D001537 4.8e-18 94.7 74 64.9
ECA232G3165 Erigeron canadensis HOM05D004974 ORTHO05D001537 1.8e-17 92.8 77 59.7
SEGI_24745 Sequoiadendron giganteum HOM05D004974 ORTHO05D001537 7.0e-17 90.9 74 62.2
HPP92_026551 Vanilla planifolia HOM05D004974 ORTHO05D001537 1.6e-16 89.7 92 52.2
Mapoly0028s0131 Marchantia polymorpha HOM05D004974 ORTHO05D001537 8.5e-15 84.0 76 53.9
Pp3c2_11660 Physcomitrium patens HOM05D004974 ORTHO05D001537 3.2e-14 82.0 74 54.1
Cc01_g17120 Coffea canephora HOM05D004974 ORTHO05D001537 4.2e-14 81.6 75 58.7
PSO170G3054 Papaver somniferum HOM05D004974 ORTHO05D001537 2.7e-13 79.0 74 51.4
PSO407G0193 Papaver somniferum HOM05D004974 ORTHO05D001537 3.6e-13 78.6 74 51.4
SMO167G0060 Selaginella moellendorffii HOM05D004974 ORTHO05D001537 1.8e-12 76.3 76 50.0
SMO347G0321 Selaginella moellendorffii HOM05D004974 ORTHO05D001537 1.8e-12 76.3 76 50.0
A05p41120 Brassica napus HOM05D004974 ORTHO05D001537 3.4e-11 72.0 65 63.1
BraA05t22838Z Brassica rapa HOM05D004974 ORTHO05D001537 3.4e-11 72.0 65 63.1
MBI10_g06044_MAGBIO Magnolia biondii HOM05D004974 ORTHO05D001537 1.7e-10 69.7 75 53.3
Lj1A85T20 Lonicera japonica HOM05D004974 ORTHO05D001537 5.4e-09 64.7 75 50.7
MELO3C026996.2 Cucumis melo HOM05D004974 ORTHO05D001537 1.3e-07 60.1 74 45.9
BcaC05g29837 Brassica carinata HOM05D004974 ORTHO05D001537 9.5e-06 53.9 76 47.4


User provided reference genes

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