Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 1.1e-292 1009.2 507 100.0
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 1.6e-291 1005.4 506 99.8
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 1.4e-290 1002.3 506 99.4
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 3.3e-289 997.7 507 98.8
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 4.4e-289 997.3 506 99.2
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 2.4e-287 991.5 507 98.2
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 6.5e-269 930.2 506 93.7
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 8.0e-259 896.7 509 90.0
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 1.2e-257 892.9 509 89.2
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 2.9e-253 878.2 460 95.4
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 1.5e-252 875.9 509 88.0
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 3.9e-237 824.7 513 82.5
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 1.3e-232 809.7 518 79.0
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 4.1e-231 804.7 506 83.6
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 5.4e-223 777.7 444 88.7
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 1.8e-205 719.5 508 70.1
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 3.9e-205 718.4 508 70.1
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 8.1e-203 710.7 510 68.6
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 6.4e-200 701.0 510 67.5
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 1.3e-197 693.3 507 67.9
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.8e-197 693.0 508 67.9
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.5e-196 689.9 508 67.3
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 9.6e-196 687.2 508 68.7
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 8.2e-195 684.1 515 67.4
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 3.1e-194 682.2 512 66.8
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 5.3e-194 681.4 517 66.7
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 2.6e-193 679.1 512 66.2
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 3.4e-193 678.7 515 67.0
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 3.8e-192 675.2 515 67.0
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 4.9e-192 674.9 509 66.8
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 1.0e-189 667.2 513 65.7
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.3e-189 666.8 447 77.9
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 2.3e-189 666.0 513 65.9
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 6.7e-189 664.5 514 65.8
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 1.5e-188 663.3 538 63.8
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 1.3e-187 660.2 510 65.5
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 3.7e-187 658.7 476 68.3
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 6.3e-187 657.9 476 68.1
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 6.3e-187 657.9 513 65.3
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.4e-186 656.8 513 65.1
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 1.4e-186 656.8 516 64.5
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 3.1e-186 655.6 507 65.9
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 4.1e-186 655.2 476 67.6
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 5.3e-186 654.8 569 59.4
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 9.0e-186 654.1 513 65.3
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 9.0e-186 654.1 512 66.0
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 1.5e-185 653.3 514 64.4
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 3.4e-185 652.1 513 63.9
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 7.7e-185 651.0 525 63.2
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.8e-184 648.7 521 64.3
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 3.8e-184 648.7 509 63.9
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 8.5e-184 647.5 511 64.0
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 4.2e-183 645.2 512 63.9
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 1.6e-182 643.3 511 64.2
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 4.6e-182 641.7 594 57.1
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 1.8e-181 639.8 515 64.5
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 2.3e-181 639.4 506 63.2
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 3.0e-181 639.0 519 63.4
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 3.0e-181 639.0 514 62.6
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 5.1e-181 638.3 510 62.9
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 6.7e-181 637.9 510 64.1
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 6.7e-181 637.9 510 63.1
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 8.8e-181 637.5 511 63.2
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 1.5e-180 636.7 510 63.1
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 5.7e-180 634.8 513 62.8
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 1.7e-179 633.3 505 63.6
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 2.2e-179 632.9 470 66.8
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 2.8e-179 632.5 511 62.8
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 1.1e-178 630.6 504 62.3
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 1.8e-178 629.8 510 64.1
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 1.8e-178 629.8 510 62.4
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 2.4e-178 629.4 510 62.7
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 3.1e-178 629.0 553 60.0
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 1.2e-177 627.1 511 63.2
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 3.4e-177 625.5 510 61.4
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 3.4e-177 625.5 511 62.8
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 2.2e-176 622.9 511 62.0
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.0e-176 621.7 514 62.6
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 6.5e-176 621.3 512 62.5
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 8.5e-176 620.9 463 67.0
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 1.9e-175 619.8 515 62.1
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 1.6e-174 616.7 509 62.9
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.6e-174 616.7 520 61.3
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.6e-174 615.5 513 62.4
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.6e-174 615.5 513 62.4
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 4.4e-172 608.6 438 68.3
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 7.4e-172 607.8 508 62.0
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 2.2e-171 606.3 471 63.7
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 2.2e-171 606.3 509 61.5
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 3.7e-171 605.5 481 63.0
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 8.2e-171 604.4 512 60.9
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 4.1e-170 602.1 477 63.5
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 4.1e-170 602.1 511 60.7
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 5.9e-169 598.2 511 59.9
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 8.5e-168 594.3 432 66.0
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 8.5e-168 594.3 497 62.2
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 4.2e-167 592.0 435 67.1
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 3.6e-166 589.0 513 58.9
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 6.1e-166 588.2 499 61.5
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 8.2e-163 577.8 463 62.4
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 1.1e-162 577.4 466 61.4
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 3.1e-162 575.9 478 59.4
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 4.5e-161 572.0 555 55.0
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.3e-160 570.5 508 63.0
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 2.0e-156 556.6 455 60.7
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 2.7e-153 546.2 424 63.4
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 2.0e-145 520.0 370 69.2
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 2.5e-143 513.1 356 70.5
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 7.2e-143 511.5 497 53.7
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 6.8e-141 505.0 414 61.8
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 1.0e-136 491.1 379 65.7
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 1.4e-122 444.1 384 59.6
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 7.1e-122 441.8 504 48.0
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 3.1e-117 426.4 219 98.2
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 1.1e-114 417.9 467 48.0
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 1.9e-111 407.1 240 87.5
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 2.5e-111 406.8 451 48.6
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 4.7e-110 402.5 390 56.4
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 7.6e-108 395.2 336 59.5
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.6e-97 360.9 286 62.9
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 3.3e-95 353.2 327 57.5
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 1.6e-78 297.7 485 39.8
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 6.7e-72 275.8 459 40.3
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 1.6e-70 271.2 467 37.0
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 3.6e-65 253.4 501 35.3
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 5.7e-63 246.1 379 40.4
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 2.1e-57 227.6 500 32.6
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 2.3e-48 197.6 156 63.5
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.5e-47 194.9 102 98.0
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 3.0e-40 170.6 250 38.8
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 2.8e-38 164.1 211 43.6
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 7.7e-28 129.4 92 68.5
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 2.9e-22 110.9 343 25.7
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 6.4e-22 109.8 133 51.1
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 5.6e-18 96.7 48 89.6
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 4.0e-16 90.5 107 47.7
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 2.5e-10 71.2 48 68.8
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 1.2e-09 68.9 57 63.2
Gorai.013G139000 Gossypium raimondii HOM05D000686 ORTHO05D000512 2.1e-09 68.2 419 23.2
Nitab4.5_0000925g0140 Nicotiana tabacum HOM05D000686 ORTHO05D000512 2.6e-07 61.2 408 24.3
Gohir.A13G122300 Gossypium hirsutum HOM05D000686 ORTHO05D000512 4.4e-07 60.5 419 22.0
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 8.3e-06 56.2 244 27.5


User provided reference genes

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