Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 4.9e-202 707.6 361 100.0
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 1.7e-186 656.0 340 98.5
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 8.4e-186 653.7 340 98.2
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 3.9e-175 618.2 336 93.8
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 1.5e-166 589.7 339 90.9
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 1.8e-164 582.8 339 90.6
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 1.2e-160 570.1 335 89.9
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 6.7e-159 564.3 339 87.9
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 5.3e-156 554.7 364 83.0
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 6.1e-136 488.0 359 73.0
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 5.8e-86 322.0 350 51.4
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 2.2e-85 320.1 356 50.6
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 2.2e-85 320.1 351 51.3
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 2.2e-85 320.1 351 51.0
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 4.9e-85 318.9 350 50.3
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 7.1e-84 315.1 347 51.3
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 9.3e-84 314.7 355 50.1
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 9.3e-84 314.7 356 50.8
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 1.2e-83 314.3 353 49.9
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 1.6e-83 313.9 353 50.7
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 1.6e-83 313.9 365 50.7
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 2.1e-83 313.5 355 49.6
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 3.5e-83 312.8 352 50.0
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 6.0e-83 312.0 359 49.3
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.0e-82 311.2 352 50.0
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 1.0e-82 311.2 365 49.0
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.3e-82 310.8 353 49.3
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.7e-82 310.5 362 48.3
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 2.3e-82 310.1 360 49.4
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 3.0e-82 309.7 352 49.4
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 3.9e-82 309.3 352 49.4
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 5.1e-82 308.9 359 48.2
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 6.6e-82 308.5 365 49.6
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 8.7e-82 308.1 351 49.6
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 1.5e-81 307.4 354 50.0
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 1.5e-81 307.4 359 49.3
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 1.9e-81 307.0 351 49.3
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 2.5e-81 306.6 354 50.3
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 2.5e-81 306.6 373 48.3
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 5.6e-81 305.4 348 50.6
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 7.3e-81 305.1 367 48.5
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 9.6e-81 304.7 360 49.4
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.3e-80 304.3 361 49.0
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 1.6e-80 303.9 353 49.0
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 2.1e-80 303.5 354 50.0
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 3.6e-80 302.8 361 48.8
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 3.6e-80 302.8 366 49.2
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 4.8e-80 302.4 360 48.3
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 4.8e-80 302.4 354 49.4
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 6.2e-80 302.0 353 48.7
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 1.1e-79 301.2 358 48.9
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 1.8e-79 300.4 358 49.2
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 1.8e-79 300.4 354 48.0
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 5.3e-79 298.9 352 46.9
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 5.3e-79 298.9 354 49.4
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 5.3e-79 298.9 357 47.9
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 6.9e-79 298.5 349 49.6
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 6.9e-79 298.5 368 47.0
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 9.0e-79 298.1 353 48.2
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 9.0e-79 298.1 357 47.9
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 1.5e-78 297.4 307 53.1
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.5e-78 297.4 352 48.6
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 2.0e-78 297.0 349 49.3
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 2.6e-78 296.6 353 47.3
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 3.4e-78 296.2 351 48.1
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 5.8e-78 295.4 354 48.0
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 7.6e-78 295.0 361 47.4
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 2.2e-77 293.5 361 47.9
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 2.2e-77 293.5 354 48.0
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 3.8e-77 292.7 350 48.3
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 3.8e-77 292.7 355 47.0
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 4.9e-77 292.4 358 47.8
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 8.4e-77 291.6 289 53.3
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 1.9e-76 290.4 353 46.5
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.4e-76 290.0 376 44.1
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 2.4e-76 290.0 377 44.6
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 4.2e-76 289.3 353 48.2
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 4.2e-76 289.3 353 48.2
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 4.2e-76 289.3 353 47.6
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 4.2e-76 289.3 370 45.7
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 5.4e-76 288.9 373 44.8
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 9.3e-76 288.1 358 46.4
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 9.3e-76 288.1 377 44.0
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.2e-75 287.7 376 43.9
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 2.1e-75 287.0 357 46.8
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 2.1e-75 287.0 358 46.6
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 2.1e-75 287.0 359 46.2
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 2.7e-75 286.6 377 44.0
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 2.7e-75 286.6 349 47.0
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 3.5e-75 286.2 349 48.1
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 3.5e-75 286.2 353 46.7
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.5e-75 286.2 373 44.8
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 3.5e-75 286.2 353 47.6
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 1.0e-74 284.6 355 47.0
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 1.3e-74 284.3 349 46.7
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 1.3e-74 284.3 345 47.0
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 3.0e-74 283.1 351 45.9
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 5.1e-74 282.3 352 47.2
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 6.7e-74 282.0 356 46.6
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 8.7e-74 281.6 361 46.3
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 8.7e-74 281.6 349 47.3
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 1.1e-73 281.2 362 46.1
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 1.1e-73 281.2 362 46.1
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 1.5e-73 280.8 358 46.6
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 3.3e-73 279.6 352 45.2
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 7.4e-73 278.5 306 50.3
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 9.6e-73 278.1 361 45.7
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 1.3e-72 277.7 360 46.4
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 2.1e-72 276.9 344 48.0
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 2.8e-72 276.6 359 44.8
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 2.8e-72 276.6 305 50.2
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 2.8e-72 276.6 361 46.3
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 6.2e-72 275.4 314 49.0
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.4e-71 274.2 357 44.0
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 1.4e-71 274.2 309 49.2
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 1.8e-71 273.9 332 48.8
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.4e-71 273.5 371 43.7
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 3.1e-71 273.1 309 48.9
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 5.3e-71 272.3 355 44.5
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 9.0e-71 271.6 354 44.4
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 2.0e-70 270.4 340 46.5
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 3.4e-70 269.6 325 47.4
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.3e-69 267.7 260 53.1
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 2.9e-69 266.5 353 43.1
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 2.4e-68 263.5 360 45.0
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 9.3e-68 261.5 356 43.8
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 4.6e-67 259.2 311 46.9
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 1.1e-65 254.6 349 45.0
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 1.5e-65 254.2 397 41.3
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 1.5e-65 254.2 318 45.6
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 2.5e-65 253.4 355 43.4
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 2.5e-65 253.4 349 43.6
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 1.3e-64 251.1 293 46.1
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.6e-64 250.8 366 41.8
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 1.6e-64 250.8 230 56.5
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 2.8e-64 250.0 274 48.2
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 6.2e-64 248.8 228 57.5
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 6.2e-64 248.8 356 42.1
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 8.1e-64 248.4 214 57.0
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 3.1e-63 246.5 296 56.8
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 1.3e-61 241.1 421 38.7
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 1.1e-60 238.0 349 41.5
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 3.2e-60 236.5 318 43.4
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 4.6e-59 232.6 360 41.7
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 3.0e-58 229.9 316 41.1
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 1.5e-57 227.6 385 37.7
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 2.5e-57 226.9 324 41.7
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 3.8e-53 213.0 298 41.9
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 2.0e-46 190.7 157 61.1
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 1.9e-44 184.1 184 63.6
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 1.0e-42 178.3 322 36.6
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 8.2e-40 168.7 99 90.9
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 2.4e-39 167.2 191 45.5
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 1.7e-37 161.0 92 90.2
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 2.9e-37 160.2 91 89.0
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 2.9e-37 160.2 316 33.2
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 5.0e-37 159.5 92 90.2
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 2.8e-32 143.7 226 39.8
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 2.4e-31 140.6 118 60.2
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 2.4e-31 140.6 118 60.2
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 2.9e-29 133.7 138 50.0
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 5.5e-28 129.4 163 43.6
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 2.7e-27 127.1 97 67.0
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 2.0e-25 120.9 114 51.8
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 4.1e-23 113.2 94 58.5
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 1.0e-21 108.6 118 50.0
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 1.1e-20 105.1 119 46.2
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 8.8e-18 95.5 54 81.5
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 8.8e-18 95.5 54 81.5
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 4.8e-16 89.7 128 43.0
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 2.0e-14 84.3 73 54.8
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 1.8e-10 71.2 95 44.2
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 4.4e-09 66.6 118 44.9
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 2.4e-07 60.8 40 72.5
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 7.0e-07 59.3 49 53.1
A07p07630 Brassica napus HOM05D026784 ORTHO05D027400 2.7e-06 57.4 60 63.3
BraA07t28555Z Brassica rapa HOM05D026784 ORTHO05D027400 3.5e-06 57.0 57 64.9


User provided reference genes

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