Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35533 Brassica carinata HOM05D006018 ORTHO05D007545 2.7e-177 625.2 308 100.0
C07p13770 Brassica napus HOM05D006018 ORTHO05D007545 7.9e-177 623.6 308 99.7
BolC7t41872H Brassica oleracea HOM05D006018 ORTHO05D007545 3.3e-175 618.2 308 98.7
BraA07t28684Z Brassica rapa HOM05D006018 ORTHO05D007545 8.2e-174 613.6 309 98.4
A07p08930 Brassica napus HOM05D006018 ORTHO05D007545 9.1e-173 610.1 307 97.7
BcaB06g26497 Brassica carinata HOM05D006018 ORTHO05D007545 1.9e-170 602.4 307 95.8
Thhalv10021194m.g Eutrema salsugineum HOM05D006018 ORTHO05D007545 3.5e-164 581.6 306 91.5
CARHR103400 Cardamine hirsuta HOM05D006018 ORTHO05D007545 6.1e-161 570.9 306 90.2
Sp3g21150 Schrenkiella parvula HOM05D006018 ORTHO05D007545 5.2e-160 567.8 306 89.9
SpUn0047_0030 Schrenkiella parvula HOM05D006018 ORTHO05D007545 5.2e-160 567.8 306 89.9
AT2G26230 Arabidopsis thaliana HOM05D006018 ORTHO05D007545 8.8e-160 567.0 306 89.9
Carub.0002s0907 Capsella rubella HOM05D006018 ORTHO05D007545 4.4e-159 564.7 306 88.9
AL1G64680 Arabidopsis lyrata HOM05D006018 ORTHO05D007545 1.7e-158 562.8 306 88.6
Aa31LG2G1810 Aethionema arabicum HOM05D006018 ORTHO05D007545 4.0e-152 541.6 305 86.9
THA.LOC104823771 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 3.0e-144 515.4 306 79.7
THA.LOC104801755 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 2.0e-143 512.7 304 80.3
THA.LOC104804947 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 2.0e-143 512.7 304 80.3
COL.COLO4_07822 Corchorus olitorius HOM05D006018 ORTHO05D007545 1.0e-131 473.8 308 75.3
Gorai.012G019800 Gossypium raimondii HOM05D006018 ORTHO05D007545 2.3e-131 472.6 305 74.8
Gohir.D04G017100 Gossypium hirsutum HOM05D006018 ORTHO05D007545 8.6e-131 470.7 305 74.1
Aqoxy1G00667 Aquilegia oxysepala HOM05D006018 ORTHO05D007545 5.6e-130 468.0 305 71.8
Migut.F00847 Erythranthe guttata HOM05D006018 ORTHO05D007545 7.3e-130 467.6 305 73.4
Gohir.A05G398800 Gossypium hirsutum HOM05D006018 ORTHO05D007545 3.6e-129 465.3 305 73.4
Lj6g0008960 Lotus japonicus HOM05D006018 ORTHO05D007545 5.2e-128 461.5 305 74.8
Thecc.10G116100 Theobroma cacao HOM05D006018 ORTHO05D007545 1.5e-127 459.9 305 72.8
HanXRQChr02g0053551 Helianthus annuus HOM05D006018 ORTHO05D007545 4.4e-127 458.4 300 74.0
CSS0019594 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 9.9e-127 457.2 305 72.8
CSS0043702 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 9.9e-127 457.2 305 72.8
PSO384G0865 Papaver somniferum HOM05D006018 ORTHO05D007545 1.7e-126 456.4 305 71.5
PSO339G6589 Papaver somniferum HOM05D006018 ORTHO05D007545 3.7e-126 455.3 305 71.5
TWI38G2380 Tripterygium wilfordii HOM05D006018 ORTHO05D007545 4.9e-126 454.9 305 72.8
Lalb_Chr19g0128951 Lupinus albus HOM05D006018 ORTHO05D007545 8.3e-126 454.1 305 71.8
SGA_v2.0_scaffold2G01315 Striga asiatica HOM05D006018 ORTHO05D007545 1.1e-125 453.8 309 72.2
Duzib106G1265 Durio zibethinus HOM05D006018 ORTHO05D007545 1.4e-125 453.4 305 70.8
Phvul.007G234300 Phaseolus vulgaris HOM05D006018 ORTHO05D007545 1.4e-125 453.4 305 71.5
CSS0004952 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.9e-125 453.0 305 72.8
MSTRG.9035 Avicennia marina HOM05D006018 ORTHO05D007545 5.4e-125 451.4 308 70.1
MD07G1062200 Malus domestica HOM05D006018 ORTHO05D007545 5.4e-125 451.4 305 71.8
Potri.010G242600 Populus trichocarpa HOM05D006018 ORTHO05D007545 7.1e-125 451.1 305 72.1
SalBow3G1532 Salvia bowleyana HOM05D006018 ORTHO05D007545 7.1e-125 451.1 319 70.2
Ca_12272_v3 Cicer arietinum L. HOM05D006018 ORTHO05D007545 1.2e-124 450.3 306 72.9
Cpa.g.sc54.21 Carica papaya HOM05D006018 ORTHO05D007545 2.7e-124 449.1 303 71.9
ECA238G1473 Erigeron canadensis HOM05D006018 ORTHO05D007545 2.7e-124 449.1 305 70.5
Medtr1g048370 Medicago truncatula HOM05D006018 ORTHO05D007545 3.5e-124 448.7 305 72.8
CANSAT56G4342 Cannabis sativa HOM05D006018 ORTHO05D007545 6.0e-124 448.0 305 71.8
Sabra10G0189600 Salix brachista HOM05D006018 ORTHO05D007545 6.0e-124 448.0 307 71.7
VMungo0720G2948 Vigna mungo HOM05D006018 ORTHO05D007545 6.0e-124 448.0 305 70.8
Dinv08587 Davidia involucrata HOM05D006018 ORTHO05D007545 7.8e-124 447.6 305 69.8
Psat6g049120 Pisum sativum HOM05D006018 ORTHO05D007545 1.3e-123 446.8 306 71.6
RcHm_v2.0_Chr1g0325281 Rosa chinensis HOM05D006018 ORTHO05D007545 1.3e-123 446.8 304 69.7
Eucgr.J00283 Eucalyptus grandis HOM05D006018 ORTHO05D007545 2.3e-123 446.0 305 69.8
Glyma.10G121524 Glycine max HOM05D006018 ORTHO05D007545 2.3e-123 446.0 305 70.5
FvH4_7g03231 Fragaria vesca HOM05D006018 ORTHO05D007545 3.0e-123 445.7 305 70.2
GSVIVG01034634001 Vitis vinifera HOM05D006018 ORTHO05D007545 3.9e-123 445.3 305 70.2
Nn6g34699 Nelumbo nucifera HOM05D006018 ORTHO05D007545 5.1e-123 444.9 305 69.8
Glyma.20G072400 Glycine max HOM05D006018 ORTHO05D007545 6.6e-123 444.5 305 70.8
TPR.G19796 Trifolium pratense HOM05D006018 ORTHO05D007545 6.6e-123 444.5 306 71.6
TAR623G0250 Trochodendron aralioides HOM05D006018 ORTHO05D007545 1.5e-122 443.4 305 70.2
Peaxi162Scf00725g00522 Petunia axillaris HOM05D006018 ORTHO05D007545 1.9e-122 443.0 304 70.1
PGSC0003DMG401001978 Solanum tuberosum HOM05D006018 ORTHO05D007545 3.3e-122 442.2 304 68.4
Ciclev10016037m.g Citrus clementina HOM05D006018 ORTHO05D007545 7.3e-122 441.0 305 70.8
PGR044G0766 Punica granatum HOM05D006018 ORTHO05D007545 1.2e-121 440.3 305 68.2
arahy.Tifrunner.gnm1.ann1.QNY1I5 Arachis hypogaea HOM05D006018 ORTHO05D007545 1.6e-121 439.9 305 70.2
CiPaw.13G043500 Carya illinoinensis HOM05D006018 ORTHO05D007545 2.1e-121 439.5 305 69.2
Manes.10G059900 Manihot esculenta HOM05D006018 ORTHO05D007545 2.1e-121 439.5 305 68.5
MD02G1258600 Malus domestica HOM05D006018 ORTHO05D007545 2.8e-121 439.1 305 69.5
Nitab4.5_0007799g0030 Nicotiana tabacum HOM05D006018 ORTHO05D007545 2.8e-121 439.1 304 68.1
Solyc11g006550.3 Solanum lycopersicum HOM05D006018 ORTHO05D007545 3.6e-121 438.7 304 68.1
arahy.Tifrunner.gnm1.ann1.Z71440 Arachis hypogaea HOM05D006018 ORTHO05D007545 4.7e-121 438.3 305 71.1
Prupe.2G072000 Prunus persica HOM05D006018 ORTHO05D007545 8.1e-121 437.6 305 69.5
Sopen11g002450 Solanum pennellii HOM05D006018 ORTHO05D007545 1.8e-120 436.4 304 68.1
arahy.Tifrunner.gnm1.ann1.Z7U9ST Arachis hypogaea HOM05D006018 ORTHO05D007545 3.1e-120 435.6 313 69.3
Cc02_g09390 Coffea canephora HOM05D006018 ORTHO05D007545 4.0e-120 435.3 305 69.5
FAN10G2047 Fragaria x ananassa HOM05D006018 ORTHO05D007545 4.0e-120 435.3 305 68.9
Hund06805 Selenicereus undatus HOM05D006018 ORTHO05D007545 5.2e-120 434.9 322 66.1
CAN.G143.25 Capsicum annuum HOM05D006018 ORTHO05D007545 8.9e-120 434.1 304 66.4
CDE02G2990 Ceratophyllum demersum HOM05D006018 ORTHO05D007545 1.5e-119 433.3 304 66.8
AUR62034490 Chenopodium quinoa HOM05D006018 ORTHO05D007545 2.6e-119 432.6 305 67.5
MELO3C012335.2 Cucumis melo HOM05D006018 ORTHO05D007545 4.4e-119 431.8 308 67.9
arahy.Tifrunner.gnm1.ann1.V4FSHN Arachis hypogaea HOM05D006018 ORTHO05D007545 4.9e-118 428.3 321 66.7
EL10Ac4g08718 Beta vulgaris HOM05D006018 ORTHO05D007545 6.4e-118 427.9 305 65.9
Lsat_1_v5_gn_2_105841 Lactuca sativa HOM05D006018 ORTHO05D007545 4.1e-117 425.2 305 68.9
RcHm_v2.0_Chr1g0325311 Rosa chinensis HOM05D006018 ORTHO05D007545 2.7e-116 422.5 350 60.6
CsaV3_5G035210 Cucumis sativus L. HOM05D006018 ORTHO05D007545 7.8e-116 421.0 308 65.9
unitig_899.g14460 Utricularia gibba HOM05D006018 ORTHO05D007545 1.0e-115 420.6 308 66.9
Sed0014972 Sechium edule HOM05D006018 ORTHO05D007545 1.3e-115 420.2 308 65.9
Nitab4.5_0001781g0180 Nicotiana tabacum HOM05D006018 ORTHO05D007545 3.3e-114 415.6 304 65.8
Ah.06g186820 Amaranthus hybridus HOM05D006018 ORTHO05D007545 4.3e-114 415.2 328 61.0
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 1.8e-112 409.8 286 68.9
Atru.chr12.1071 Acer truncatum HOM05D006018 ORTHO05D007545 3.1e-112 409.1 272 72.8
Haze_03464 Corylus avellana HOM05D006018 ORTHO05D007545 3.1e-112 409.1 384 56.2
FAN01G2803 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.2e-111 407.1 308 65.3
vmacro10321 Vaccinium macrocarpon HOM05D006018 ORTHO05D007545 4.4e-111 405.2 341 61.0
ATR0772G096 Amborella trichopoda HOM05D006018 ORTHO05D007545 4.9e-110 401.7 299 64.9
Zm00001eb146880 Zea mays HOM05D006018 ORTHO05D007545 6.4e-110 401.4 308 62.3
ClCG05G021930 Citrullus lanatus HOM05D006018 ORTHO05D007545 1.2e-108 397.1 309 63.8
Hma1.2p1_0381F.1_g139980 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 4.9e-102 375.2 240 73.8
HPP92_027461 Vanilla planifolia HOM05D006018 ORTHO05D007545 6.4e-102 374.8 307 60.3
FAN03G1346 Fragaria x ananassa HOM05D006018 ORTHO05D007545 2.1e-100 369.8 285 63.5
Actinidia34731 Actinidia chinensis HOM05D006018 ORTHO05D007545 4.6e-100 368.6 245 70.6
Nn2g14297 Nelumbo nucifera HOM05D006018 ORTHO05D007545 1.3e-99 367.1 305 61.0
Lj3A923T60 Lonicera japonica HOM05D006018 ORTHO05D007545 2.6e-95 352.8 276 64.1
DCAR_004552 Daucus carota HOM05D006018 ORTHO05D007545 5.8e-95 351.7 246 69.1
Rhsim09G0141100 Rhododendron simsii HOM05D006018 ORTHO05D007545 5.5e-93 345.1 305 58.7
AUR62034169 Chenopodium quinoa HOM05D006018 ORTHO05D007545 9.3e-93 344.4 241 65.6
Pp3c14_15560 Physcomitrium patens HOM05D006018 ORTHO05D007545 4.6e-92 342.0 301 56.8
QL04p047894 Quercus lobata HOM05D006018 ORTHO05D007545 7.9e-84 314.7 206 69.9
SMO134G0227 Selaginella moellendorffii HOM05D006018 ORTHO05D007545 3.9e-83 312.4 314 53.2
Sc09g0005130 Simmondsia chinensis HOM05D006018 ORTHO05D007545 2.5e-82 309.7 211 67.8
AagrBONN_evm.TU.Sc2ySwM_344.453 Anthoceros agrestis HOM05D006018 ORTHO05D007545 4.1e-80 302.4 293 52.6
Mapoly0079s0008 Marchantia polymorpha HOM05D006018 ORTHO05D007545 5.0e-78 295.4 295 52.2
Cre12.g504950 Chlamydomonas reinhardtii HOM05D006018 ORTHO05D007545 7.4e-66 255.0 292 45.5
CSS0009212 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 5.7e-58 228.8 148 75.0
MCO08G151 Micromonas commoda HOM05D006018 ORTHO05D007545 2.4e-56 223.4 295 42.0
CSS0030296 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 2.0e-55 220.3 146 74.7
CBR_g20325 Chara braunii HOM05D006018 ORTHO05D007545 1.1e-53 214.5 181 56.9
PRCOL_00005817 Prasinoderma coloniale HOM05D006018 ORTHO05D007545 1.1e-53 214.5 319 42.0
Os01g0865100 Oryza sativa ssp. japonica HOM05D006018 ORTHO05D007545 2.6e-50 203.4 159 61.0
Oeu009248.1 Olea europaea HOM05D006018 ORTHO05D007545 6.3e-41 172.2 184 52.7
Hma1.2p1_0381F.1_g139990 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 4.5e-39 166.0 149 58.4
Cfa010524 Carpinus fangiana HOM05D006018 ORTHO05D007545 8.9e-35 151.8 149 51.7
SEGI_29992 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 4.7e-28 129.4 101 60.4
arahy.Tifrunner.gnm1.ann1.WX42FR Arachis hypogaea HOM05D006018 ORTHO05D007545 1.0e-27 128.3 106 62.3
arahy.Tifrunner.gnm1.ann1.BN00BV Arachis hypogaea HOM05D006018 ORTHO05D007545 1.5e-26 124.4 96 67.7
FAN01G0562 Fragaria x ananassa HOM05D006018 ORTHO05D007545 5.2e-19 99.4 67 67.2
Eucgr.J00287 Eucalyptus grandis HOM05D006018 ORTHO05D007545 7.5e-18 95.5 58 72.4
SEGI_30163 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 2.4e-16 90.5 67 61.2
SEGI_33218 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.9e-13 80.9 66 60.6
SEGI_30780 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.2e-12 78.2 61 62.3


User provided reference genes

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