Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35421 Brassica carinata HOM05D001425 ORTHO05D001272 3.5e-77 291.6 151 100.0
A07p10760 Brassica napus HOM05D001425 ORTHO05D001272 3.1e-73 278.5 151 96.7
C07p16370 Brassica napus HOM05D001425 ORTHO05D001272 4.0e-73 278.1 151 96.7
BolC7t42131H Brassica oleracea HOM05D001425 ORTHO05D001272 4.0e-73 278.1 151 96.7
BraA07t28870Z Brassica rapa HOM05D001425 ORTHO05D001272 5.8e-72 274.2 151 95.4
Carub.0001s2748 Capsella rubella HOM05D001425 ORTHO05D001272 1.2e-53 213.4 148 79.7
BcaB03g13893 Brassica carinata HOM05D001425 ORTHO05D001272 1.8e-52 209.5 148 78.4
Sp1g25200 Schrenkiella parvula HOM05D001425 ORTHO05D001272 6.2e-50 201.1 148 77.0
AT1G29270 Arabidopsis thaliana HOM05D001425 ORTHO05D001272 3.1e-49 198.7 148 75.0
AL1G43060 Arabidopsis lyrata HOM05D001425 ORTHO05D001272 1.9e-46 189.5 148 72.3
Thhalv10009779m.g Eutrema salsugineum HOM05D001425 ORTHO05D001272 3.2e-46 188.7 148 70.3
CARHR028590 Cardamine hirsuta HOM05D001425 ORTHO05D001272 1.4e-30 136.7 84 78.6
THA.LOC104812642 Tarenaya hassleriana HOM05D001425 ORTHO05D001272 1.8e-28 129.8 156 54.5
Aa31LG6G6260 Aethionema arabicum HOM05D001425 ORTHO05D001272 1.5e-27 126.7 116 62.9
THA.LOC104820606 Tarenaya hassleriana HOM05D001425 ORTHO05D001272 5.9e-24 114.8 150 50.7
MELO3C007201.2 Cucumis melo HOM05D001425 ORTHO05D001272 7.2e-22 107.8 155 40.6
CsaV3_6G051020 Cucumis sativus L. HOM05D001425 ORTHO05D001272 1.4e-20 103.6 155 39.4
ClCG01G023870 Citrullus lanatus HOM05D001425 ORTHO05D001272 2.3e-20 102.8 155 42.6
Ciclev10016999m.g Citrus clementina HOM05D001425 ORTHO05D001272 2.0e-19 99.8 152 40.8
Sed0026621 Sechium edule HOM05D001425 ORTHO05D001272 8.2e-18 94.4 125 42.4
Thecc.06G166200 Theobroma cacao HOM05D001425 ORTHO05D001272 1.4e-17 93.6 153 41.2
Duzib160G0077 Durio zibethinus HOM05D001425 ORTHO05D001272 1.6e-16 90.1 153 37.9
Manes.16G038700 Manihot esculenta HOM05D001425 ORTHO05D001272 1.6e-16 90.1 154 42.9
Gorai.009G160900 Gossypium raimondii HOM05D001425 ORTHO05D001272 2.0e-16 89.7 155 38.1
COL.COLO4_31243 Corchorus olitorius HOM05D001425 ORTHO05D001272 3.5e-16 89.0 153 40.5
A02p35250 Brassica napus HOM05D003011 ORTHO05D003330 7.7e-16 87.8 59 78.0
Prupe.4G066300 Prunus persica HOM05D001425 ORTHO05D001272 7.7e-16 87.8 156 41.7
Gohir.A05G153700 Gossypium hirsutum HOM05D001425 ORTHO05D001272 1.0e-15 87.4 153 36.6
Atru.chr10.1575 Acer truncatum HOM05D001425 ORTHO05D001272 1.7e-15 86.7 132 41.7
Sed0000998 Sechium edule HOM05D001425 ORTHO05D001272 2.2e-15 86.3 153 38.6
MD10G1275900 Malus domestica HOM05D001425 ORTHO05D001272 2.9e-15 85.9 156 40.4
Cc02_g15540 Coffea canephora HOM05D001425 ORTHO05D001272 3.8e-15 85.5 149 36.2
TAR629G2569 Trochodendron aralioides HOM05D001425 ORTHO05D001272 3.8e-15 85.5 150 40.7
FvH4_3g07370 Fragaria vesca HOM05D001425 ORTHO05D001272 6.5e-15 84.7 150 35.3
QL05p049746 Quercus lobata HOM05D001425 ORTHO05D001272 8.5e-15 84.3 150 38.7
Gorai.011G037600 Gossypium raimondii HOM05D001425 ORTHO05D001272 1.1e-14 84.0 149 39.6
Dinv12758 Davidia involucrata HOM05D001425 ORTHO05D001272 1.5e-14 83.6 148 39.9
Gohir.A10G035000 Gossypium hirsutum HOM05D001425 ORTHO05D001272 1.5e-14 83.6 148 39.2
Gohir.D05G156400 Gossypium hirsutum HOM05D001425 ORTHO05D001272 1.5e-14 83.6 155 36.8
GSVIVG01021251001 Vitis vinifera HOM05D001425 ORTHO05D001272 1.5e-14 83.6 139 44.6
RcHm_v2.0_Chr5g0011571 Rosa chinensis HOM05D001425 ORTHO05D001272 1.9e-14 83.2 128 40.6
FAN16G2157 Fragaria x ananassa HOM05D001425 ORTHO05D001272 2.5e-14 82.8 149 34.9
Potri.004G060800 Populus trichocarpa HOM05D001425 ORTHO05D001272 2.5e-14 82.8 154 39.0
CSS0039671 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.2e-14 82.4 121 41.3
Peaxi162Scf00405g00117 Petunia axillaris HOM05D001425 ORTHO05D001272 3.2e-14 82.4 119 42.9
Gohir.D06G138400 Gossypium hirsutum HOM05D001425 ORTHO05D001272 5.5e-14 81.6 154 35.7
Sabra04G0040100 Salix brachista HOM05D001425 ORTHO05D001272 7.2e-14 81.3 154 37.0
FAN21G1795 Fragaria x ananassa HOM05D001425 ORTHO05D001272 9.4e-14 80.9 148 35.1
Gohir.D10G035700 Gossypium hirsutum HOM05D001425 ORTHO05D001272 9.4e-14 80.9 148 38.5
Medtr8g085150 Medicago truncatula HOM05D001425 ORTHO05D001272 9.4e-14 80.9 154 36.4
Duzib235G0112 Durio zibethinus HOM05D001425 ORTHO05D001272 1.6e-13 80.1 148 35.8
Gorai.010G160900 Gossypium raimondii HOM05D001425 ORTHO05D001272 2.1e-13 79.7 154 35.1
FAN11G3009 Fragaria x ananassa HOM05D001425 ORTHO05D001272 2.7e-13 79.3 153 34.0
Gohir.A06G132900 Gossypium hirsutum HOM05D001425 ORTHO05D001272 3.6e-13 79.0 154 35.1
arahy.Tifrunner.gnm1.ann1.A8KLXT Arachis hypogaea HOM05D001425 ORTHO05D001272 6.1e-13 78.2 150 36.7
FAN25G1823 Fragaria x ananassa HOM05D001425 ORTHO05D001272 6.1e-13 78.2 149 33.6
Dinv32343 Davidia involucrata HOM05D001425 ORTHO05D001272 1.0e-12 77.4 97 48.5
FAN13G2418 Fragaria x ananassa HOM05D001425 ORTHO05D001272 1.0e-12 77.4 151 35.1
EL10Ac8g20563 Beta vulgaris HOM05D001425 ORTHO05D001272 1.4e-12 77.0 121 45.5
Actinidia35598 Actinidia chinensis HOM05D001425 ORTHO05D001272 1.8e-12 76.6 147 34.7
MD05G1295800 Malus domestica HOM05D001425 ORTHO05D001272 1.8e-12 76.6 156 36.5
Manes.17G058800 Manihot esculenta HOM05D001425 ORTHO05D001272 1.8e-12 76.6 153 36.6
Ca_17900_v3 Cicer arietinum L. HOM05D001425 ORTHO05D001272 2.3e-12 76.3 129 39.5
Lj4g0009651 Lotus japonicus HOM05D001425 ORTHO05D001272 2.3e-12 76.3 159 38.4
Oeu041734.1 Olea europaea HOM05D001425 ORTHO05D001272 3.0e-12 75.9 131 36.6
Oeu060166.1 Olea europaea HOM05D001425 ORTHO05D001272 3.0e-12 75.9 131 36.6
Eucgr.D00475 Eucalyptus grandis HOM05D001425 ORTHO05D001272 4.0e-12 75.5 142 36.6
VMungo0251G3022 Vigna mungo HOM05D001425 ORTHO05D001272 5.2e-12 75.1 154 35.1
Lalb_Chr07g0186331 Lupinus albus HOM05D001425 ORTHO05D001272 8.8e-12 74.3 126 38.1
Sabra11G0058000 Salix brachista HOM05D001425 ORTHO05D001272 1.5e-11 73.6 115 42.6
TAR626G1246 Trochodendron aralioides HOM05D001425 ORTHO05D001272 1.5e-11 73.6 148 36.5
MSTRG.13230 Avicennia marina HOM05D001425 ORTHO05D001272 2.0e-11 73.2 126 39.7
Hund21446 Selenicereus undatus HOM05D001425 ORTHO05D001272 2.0e-11 73.2 153 37.3
Oeu039884.1 Olea europaea HOM05D001425 ORTHO05D001272 2.6e-11 72.8 96 41.7
Glyma.05G160700 Glycine max HOM05D001425 ORTHO05D001272 3.3e-11 72.4 117 39.3
Glyma.08G118100 Glycine max HOM05D001425 ORTHO05D001272 3.3e-11 72.4 154 35.1
Cfa000649 Carpinus fangiana HOM05D001425 ORTHO05D001272 4.4e-11 72.0 111 38.7
Sc05g0006910 Simmondsia chinensis HOM05D001425 ORTHO05D001272 5.7e-11 71.6 109 43.1
Sopen03g002050 Solanum pennellii HOM05D001425 ORTHO05D001272 5.7e-11 71.6 121 43.0
Solyc03g006040.3 Solanum lycopersicum HOM05D001425 ORTHO05D001272 7.5e-11 71.2 121 43.0
TPR.G6742 Trifolium pratense HOM05D001425 ORTHO05D001272 7.5e-11 71.2 129 36.4
arahy.Tifrunner.gnm1.ann1.T2RFJB Arachis hypogaea HOM05D001425 ORTHO05D001272 9.7e-11 70.9 154 35.7
Nitab4.5_0005428g0040 Nicotiana tabacum HOM05D001425 ORTHO05D001272 9.7e-11 70.9 143 37.8
CAN.G866.32 Capsicum annuum HOM05D001425 ORTHO05D001272 1.3e-10 70.5 144 37.5
Phvul.002G240800 Phaseolus vulgaris HOM05D001425 ORTHO05D001272 1.3e-10 70.5 154 35.1
SalBow7G3660 Salvia bowleyana HOM05D001425 ORTHO05D001272 4.8e-10 68.6 124 37.9
TWI09G0354 Tripterygium wilfordii HOM05D001425 ORTHO05D001272 4.8e-10 68.6 154 36.4
Nn1g04511 Nelumbo nucifera HOM05D001425 ORTHO05D001272 6.3e-10 68.2 150 35.3
Potri.011G070000 Populus trichocarpa HOM05D001425 ORTHO05D001272 6.3e-10 68.2 140 38.6
CiPaw.09G072500 Carya illinoinensis HOM05D001425 ORTHO05D001272 8.2e-10 67.8 153 33.3
Actinidia16777 Actinidia chinensis HOM05D001425 ORTHO05D001272 1.1e-09 67.4 126 36.5
MSTRG.7426 Avicennia marina HOM05D001425 ORTHO05D001272 1.1e-09 67.4 121 38.0
PGR042G0512 Punica granatum HOM05D001425 ORTHO05D001272 1.1e-09 67.4 150 34.7
Ah.09g233510 Amaranthus hybridus HOM05D037095 ORTHO05D001272 1.8e-09 66.6 78 43.6
Lalb_Chr12g0204971 Lupinus albus HOM05D001425 ORTHO05D001272 2.4e-09 66.2 155 32.9
Medtr8g087020 Medicago truncatula HOM05D001425 ORTHO05D001272 4.1e-09 65.5 140 35.0
PSO782G3214 Papaver somniferum HOM05D001425 ORTHO05D001272 5.3e-09 65.1 117 42.7
PSO170G6757 Papaver somniferum HOM05D001425 ORTHO05D001272 9.1e-09 64.3 116 41.4
ATR0012G037 Amborella trichopoda HOM05D001425 ORTHO05D001272 1.2e-08 63.9 108 38.0
Cpa.g.sc7.94 Carica papaya HOM05D001425 ORTHO05D001272 1.2e-08 63.9 141 38.3
Nn3g21110 Nelumbo nucifera HOM05D001425 ORTHO05D001272 1.2e-08 63.9 148 35.8
PGSC0003DMG400026751 Solanum tuberosum HOM05D001425 ORTHO05D001272 1.2e-08 63.9 106 42.5
TPR.G33016 Trifolium pratense HOM05D001425 ORTHO05D001272 1.2e-08 63.9 77 49.4
MSTRG.16167 Avicennia marina HOM05D001425 ORTHO05D001272 1.6e-08 63.5 126 35.7
Nitab4.5_0002458g0050 Nicotiana tabacum HOM05D001425 ORTHO05D001272 1.6e-08 63.5 98 43.9
Psat7g069880 Pisum sativum HOM05D001425 ORTHO05D001272 2.7e-08 62.8 112 37.5
Hma1.2p1_0829F.1_g225230 Hydrangea macrophylla HOM05D001425 ORTHO05D001272 3.5e-08 62.4 62 53.2
SGA_v2.0_scaffold1G00076 Striga asiatica HOM05D001425 ORTHO05D001272 3.5e-08 62.4 104 38.5
Haze_06180 Corylus avellana HOM05D001425 ORTHO05D001272 4.5e-08 62.0 71 42.3
Migut.L00714 Erythranthe guttata HOM05D001425 ORTHO05D001272 1.0e-07 60.8 109 33.9
Psat0s2741g0080 Pisum sativum HOM05D001425 ORTHO05D001272 1.3e-07 60.5 157 30.6
TPR.G6770 Trifolium pratense HOM05D001425 ORTHO05D001272 2.2e-07 59.7 78 46.2
GSVIVG01020751001 Vitis vinifera HOM05D001425 ORTHO05D001272 2.2e-07 59.7 128 36.7
CDE06G2729 Ceratophyllum demersum HOM05D001425 ORTHO05D001272 3.8e-07 58.9 102 40.2
C04p68260 Brassica napus HOM05D001425 ORTHO05D001272 8.5e-07 57.8 132 32.6
BolC4t28329H Brassica oleracea HOM05D001425 ORTHO05D001272 8.5e-07 57.8 132 32.6
ATR1127G099 Amborella trichopoda HOM05D001425 ORTHO05D001272 1.5e-06 57.0 124 40.3
ClCG11G005870 Citrullus lanatus HOM05D001425 ORTHO05D001272 1.5e-06 57.0 128 35.9
A04p30820 Brassica napus HOM05D001425 ORTHO05D001272 1.9e-06 56.6 133 31.6
BraA04t18541Z Brassica rapa HOM05D001425 ORTHO05D001272 1.9e-06 56.6 133 31.6
Glyma.09G278100 Glycine max HOM05D001425 ORTHO05D001272 1.9e-06 56.6 140 35.0
Potri.013G154100 Populus trichocarpa HOM05D001425 ORTHO05D001272 2.5e-06 56.2 145 31.7
MD03G1058700 Malus domestica HOM05D001425 ORTHO05D001272 3.2e-06 55.8 125 35.2
Glyma.14G053900 Glycine max HOM05D001425 ORTHO05D001272 4.2e-06 55.5 126 37.3
Lj1P964T16 Lonicera japonica HOM05D001425 ORTHO05D001272 4.2e-06 55.5 90 40.0
AL5G37540 Arabidopsis lyrata HOM05D001425 ORTHO05D001272 5.5e-06 55.1 137 29.9
BcaB06g29141 Brassica carinata HOM05D001425 ORTHO05D001272 7.2e-06 54.7 136 35.3
BolC4t28331H Brassica oleracea HOM05D001425 ORTHO05D001272 7.2e-06 54.7 127 33.1
Hma1.2p1_1349F.1_g277390 Hydrangea macrophylla HOM05D001425 ORTHO05D001272 7.2e-06 54.7 120 37.5
Oeu026432.2 Olea europaea HOM05D001425 ORTHO05D001272 7.2e-06 54.7 125 34.4
Sp4g22780 Schrenkiella parvula HOM05D001425 ORTHO05D001272 7.2e-06 54.7 127 33.1
TAR626G0916 Trochodendron aralioides HOM05D001425 ORTHO05D001272 7.2e-06 54.7 54 55.6
Carub.0005s2300 Capsella rubella HOM05D001425 ORTHO05D001272 9.4e-06 54.3 114 34.2


User provided reference genes

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