Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35351 Brassica carinata HOM05D013838 ORTHO05D019961 1.8e-57 225.7 114 100.0
BcaC02g09968 Brassica carinata HOM05D013838 ORTHO05D019961 3.2e-54 214.9 110 97.3
C04p34500 Brassica napus HOM05D013838 ORTHO05D019961 3.2e-54 214.9 110 97.3
BcaB01g01605 Brassica carinata HOM05D013838 ORTHO05D092283 1.9e-27 125.9 110 65.5
BolC4t25011H Brassica oleracea HOM05D013838 ORTHO05D019961 7.3e-27 124.0 110 63.6
A03p06970 Brassica napus HOM05D013838 ORTHO05D019961 3.6e-26 121.7 110 61.8
A09p37240 Brassica napus HOM05D013838 ORTHO05D019961 3.6e-26 121.7 110 61.8
BolC9t57974H Brassica oleracea HOM05D013838 ORTHO05D019961 8.1e-26 120.6 110 62.7
BolC5t31393H Brassica oleracea HOM05D013838 ORTHO05D033741 4.2e-22 108.2 52 96.2
BolC7t42215H Brassica oleracea HOM05D013838 ORTHO05D033741 4.2e-22 108.2 52 96.2
C01p16270 Brassica napus HOM05D013838 ORTHO05D033741 6.0e-21 104.4 50 98.0
BcaC09g50107 Brassica carinata HOM05D001343 ORTHO05D002008 7.6e-16 87.4 50 82.0
A01p23240 Brassica napus HOM05D001343 ORTHO05D002008 7.6e-16 87.4 50 82.0
C01p28880 Brassica napus HOM05D001343 ORTHO05D002008 7.6e-16 87.4 50 82.0
BolC1t02820H Brassica oleracea HOM05D001343 ORTHO05D002008 7.6e-16 87.4 50 82.0
BraA01t02234Z Brassica rapa HOM05D001343 ORTHO05D002008 7.6e-16 87.4 50 82.0
BcaNung00367 Brassica carinata HOM05D001343 ORTHO05D002008 1.7e-15 86.3 50 80.0
CARHR161460 Cardamine hirsuta HOM05D001343 ORTHO05D002008 3.2e-14 82.0 50 74.0
AL5G32290 Arabidopsis lyrata HOM05D001343 ORTHO05D002008 2.1e-13 79.3 50 72.0
Sp5g10440 Schrenkiella parvula HOM05D001343 ORTHO05D002008 4.6e-13 78.2 50 72.0
AT3G51830 Arabidopsis thaliana HOM05D001343 ORTHO05D002008 6.0e-13 77.8 50 70.0
Carub.0005s1818 Capsella rubella HOM05D001343 ORTHO05D002008 6.7e-12 74.3 51 70.6
Thhalv10010245m.g Eutrema salsugineum HOM05D001343 ORTHO05D002008 1.1e-11 73.6 50 70.0
THA.LOC104805930 Tarenaya hassleriana HOM05D001343 ORTHO05D002008 8.1e-10 67.4 50 64.0
Aa31LG10G9060 Aethionema arabicum HOM05D001343 ORTHO05D002008 1.8e-09 66.2 50 62.0
Cpa.g.sc11.98 Carica papaya HOM05D001343 ORTHO05D002008 1.5e-08 63.2 62 56.5
CiPaw.10G157400 Carya illinoinensis HOM05D001343 ORTHO05D002008 1.5e-08 63.2 54 61.1
Ciclev10011419m.g Citrus clementina HOM05D001343 ORTHO05D002008 2.0e-08 62.8 52 63.5
Prupe.6G279500 Prunus persica HOM05D001343 ORTHO05D002008 2.0e-08 62.8 45 62.2
Cfa017190 Carpinus fangiana HOM05D001343 ORTHO05D002008 9.9e-08 60.5 54 59.3
Haze_21021 Corylus avellana HOM05D001343 ORTHO05D002008 1.3e-07 60.1 54 57.4
Thecc.05G013700 Theobroma cacao HOM05D001343 ORTHO05D002008 1.3e-07 60.1 49 61.2
Actinidia11573 Actinidia chinensis HOM05D001343 ORTHO05D002008 2.2e-07 59.3 62 53.2
QL07p035143 Quercus lobata HOM05D001343 ORTHO05D002008 2.2e-07 59.3 43 60.5
Lalb_Chr01g0023001 Lupinus albus HOM05D001343 ORTHO05D002008 1.4e-06 56.6 54 57.4
TWI74G0687 Tripterygium wilfordii HOM05D001343 ORTHO05D002008 1.4e-06 56.6 62 48.4
Lalb_Chr03g0043191 Lupinus albus HOM05D001343 ORTHO05D002008 1.9e-06 56.2 65 52.3
RcHm_v2.0_Chr3g0462761 Rosa chinensis HOM05D001343 ORTHO05D002008 1.9e-06 56.2 42 59.5
FAN14G3930 Fragaria x ananassa HOM05D001343 ORTHO05D002008 2.4e-06 55.8 42 61.9
MELO3C009151.2 Cucumis melo HOM05D001343 ORTHO05D002008 3.2e-06 55.5 42 59.5
vmacro20292 Vaccinium macrocarpon HOM05D001343 ORTHO05D002008 3.2e-06 55.5 53 54.7
GSVIVG01011177001 Vitis vinifera HOM05D001343 ORTHO05D002008 3.2e-06 55.5 53 52.8
Actinidia29090 Actinidia chinensis HOM05D001343 ORTHO05D002008 4.2e-06 55.1 51 52.9
CsaV3_3G033610 Cucumis sativus L. HOM05D001343 ORTHO05D002008 5.5e-06 54.7 42 59.5
Dinv01496 Davidia involucrata HOM05D001343 ORTHO05D002008 5.5e-06 54.7 50 56.0
Duzib093G1742 Durio zibethinus HOM05D001343 ORTHO05D002008 5.5e-06 54.7 50 56.0
CSS0016549 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D002008 9.3e-06 53.9 50 52.0
CSS0021516 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D002008 9.3e-06 53.9 50 52.0
FvH4_6g11241 Fragaria vesca HOM05D001343 ORTHO05D002008 9.3e-06 53.9 50 54.0
FAN09G1852 Fragaria x ananassa HOM05D001343 ORTHO05D002008 9.3e-06 53.9 50 54.0
FAN14G0125 Fragaria x ananassa HOM05D001343 ORTHO05D002008 9.3e-06 53.9 50 54.0


User provided reference genes

Program Settings