Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 1.4e-159 566.2 281 100.0
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 2.4e-156 555.4 290 96.2
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 2.7e-155 552.0 281 98.2
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 5.1e-154 547.7 299 93.3
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 2.5e-153 545.4 290 95.5
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 9.6e-145 516.9 285 90.2
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 3.5e-139 498.4 283 86.6
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 2.3e-138 495.7 283 86.2
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 2.3e-138 495.7 282 86.9
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 3.0e-138 495.4 283 86.9
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 4.8e-136 488.0 283 85.9
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 2.7e-131 472.2 283 83.4
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 1.3e-128 463.4 283 82.7
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 7.6e-126 454.1 294 78.6
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 4.9e-125 451.4 300 77.7
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 8.2e-120 434.1 261 83.5
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 2.2e-117 426.0 270 80.4
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 2.7e-115 419.1 284 72.5
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 1.9e-105 386.3 283 66.1
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 6.3e-104 381.3 279 65.6
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 1.4e-103 380.2 283 65.4
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 1.4e-103 380.2 279 66.7
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 5.3e-103 378.3 282 64.9
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 6.9e-103 377.9 333 60.1
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 3.4e-102 375.6 293 64.2
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 5.0e-101 371.7 278 67.3
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 6.5e-101 371.3 283 65.4
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 1.4e-100 370.2 289 64.7
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 6.7e-98 361.3 283 62.2
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 4.4e-97 358.6 289 62.3
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 2.2e-96 356.3 297 60.9
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 4.8e-96 355.1 288 61.5
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 8.2e-96 354.4 283 61.1
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 8.2e-96 354.4 289 61.9
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 1.4e-95 353.6 284 61.6
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 2.4e-95 352.8 279 64.2
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 2.4e-95 352.8 288 61.5
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 5.3e-95 351.7 289 61.6
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 6.9e-95 351.3 291 59.5
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 1.2e-94 350.5 287 61.0
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 7.7e-94 347.8 291 60.1
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 1.7e-93 346.7 297 59.3
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 2.2e-93 346.3 291 60.5
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 2.9e-93 345.9 288 59.4
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 3.8e-93 345.5 289 59.9
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 3.8e-93 345.5 313 58.1
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 8.5e-93 344.4 281 61.2
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 1.1e-92 344.0 288 61.1
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 1.4e-92 343.6 174 96.0
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 2.5e-92 342.8 278 61.2
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 3.6e-91 339.0 289 59.2
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 1.4e-90 337.0 289 57.4
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 3.9e-90 335.5 296 56.4
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 5.2e-90 335.1 290 58.6
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 2.0e-89 333.2 291 57.0
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 4.4e-89 332.0 291 56.7
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 4.4e-89 332.0 308 56.8
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 2.8e-88 329.3 269 63.2
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 4.8e-88 328.6 278 59.4
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 8.2e-88 327.8 289 58.5
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.1e-87 327.4 286 57.7
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 3.1e-87 325.9 293 54.6
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 3.1e-87 325.9 319 55.2
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 1.2e-86 323.9 283 59.7
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 1.6e-86 323.6 285 58.6
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 1.6e-86 323.6 291 59.1
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 3.5e-86 322.4 285 59.6
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 1.0e-85 320.9 273 58.2
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 5.0e-85 318.5 288 57.6
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 8.5e-85 317.8 289 55.0
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 1.1e-84 317.4 286 56.6
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 1.9e-84 316.6 273 58.6
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 5.5e-84 315.1 293 54.9
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 1.0e-82 310.8 285 58.9
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 1.8e-82 310.1 266 60.9
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 4.0e-82 308.9 294 54.4
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 1.2e-81 307.4 290 54.1
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 1.7e-80 303.5 217 65.9
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 2.8e-80 302.8 278 57.6
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 2.4e-79 299.7 284 56.0
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 4.1e-79 298.9 291 52.6
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 1.6e-78 297.0 288 54.9
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 1.2e-75 287.3 289 52.2
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 3.6e-75 285.8 287 51.2
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 1.3e-72 277.3 269 54.3
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 1.2e-70 270.8 306 51.6
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 1.3e-69 267.3 290 50.7
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 2.3e-69 266.5 174 71.3
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 1.1e-68 264.2 237 57.0
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 3.2e-68 262.7 280 51.1
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 1.7e-64 250.4 173 68.8
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 1.2e-62 244.2 285 49.5
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 1.6e-62 243.8 289 47.1
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 9.5e-60 234.6 169 68.0
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 2.8e-59 233.0 298 45.3
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 2.6e-57 226.5 269 44.2
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 2.2e-56 223.4 277 46.9
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 6.4e-56 221.9 184 58.7
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 3.2e-55 219.5 282 42.2
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 4.7e-51 205.7 281 41.6
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 8.9e-50 201.4 118 78.8
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 8.9e-50 201.4 118 78.8
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 1.3e-48 197.6 268 42.5
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 2.4e-47 193.4 283 41.0
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 3.2e-47 193.0 102 89.2
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 9.2e-47 191.4 284 42.3
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 1.2e-46 191.0 300 40.3
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 1.3e-45 187.6 319 38.9
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 1.7e-45 187.2 289 40.5
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 2.5e-44 183.3 268 42.9
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 3.3e-44 183.0 280 41.1
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 1.8e-42 177.2 103 78.6
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 4.1e-39 166.0 181 47.5
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 9.2e-39 164.9 285 36.5
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 6.0e-38 162.2 116 65.5
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 6.0e-38 162.2 322 35.4
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 1.7e-37 160.6 95 80.0
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 3.0e-37 159.8 214 43.9
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 3.9e-37 159.5 288 38.5
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 1.5e-36 157.5 233 42.5
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 2.5e-36 156.8 288 38.5
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 3.3e-36 156.4 211 43.6
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 2.8e-35 153.3 174 46.6
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 8.1e-35 151.8 152 51.3
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 2.8e-27 126.7 152 42.8
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 9.0e-26 121.7 102 58.8
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 2.0e-25 120.6 192 39.1
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 2.7e-22 110.2 110 54.5
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 3.9e-21 106.3 57 86.0
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 9.6e-20 101.7 152 39.5
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.1e-19 100.5 152 38.8
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 2.6e-17 93.6 50 86.0
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 8.7e-13 78.6 50 70.0
Pp3c14_11090 Physcomitrium patens HOM05D005869 ORTHO05D007229 2.0e-09 67.4 94 43.6
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 5.8e-09 65.9 97 36.1
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 1.4e-07 61.2 63 52.4
COL.COLO4_06414 Corchorus olitorius HOM05D005869 ORTHO05D007229 5.5e-07 59.3 71 46.5
arahy.Tifrunner.gnm1.ann1.G1CRI5 Arachis hypogaea HOM05D000992 ORTHO05D001928 2.1e-06 57.4 62 51.6
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 3.5e-06 56.6 60 53.3
SEGI_05009 Sequoiadendron giganteum HOM05D005869 ORTHO05D007229 4.6e-06 56.2 96 38.5


User provided reference genes

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