Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 1.5e-116 422.9 218 100.0
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 1.5e-116 422.9 218 100.0
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 1.8e-98 362.8 198 95.5
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 5.2e-82 308.1 168 93.5
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 5.2e-82 308.1 168 93.5
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 6.2e-67 258.1 170 80.6
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 3.3e-52 209.1 170 65.3
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 3.7e-51 205.7 170 64.1
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.4e-50 203.8 174 64.4
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 1.3e-48 197.2 170 63.5
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 3.8e-48 195.7 170 62.4
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 3.2e-47 192.6 170 62.4
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 1.0e-40 171.0 172 58.7
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 1.7e-40 170.2 184 56.0
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 7.2e-39 164.9 171 57.3
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 2.7e-38 162.9 155 64.5
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 6.1e-38 161.8 169 55.6
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 3.9e-37 159.1 174 54.0
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 2.5e-36 156.4 184 50.5
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 5.7e-36 155.2 201 49.3
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 5.7e-36 155.2 194 49.0
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 7.4e-36 154.8 183 50.3
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 2.8e-35 152.9 194 49.0
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 4.8e-35 152.1 180 50.0
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 5.3e-34 148.7 180 50.6
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 5.3e-34 148.7 189 47.1
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 1.5e-33 147.1 182 47.3
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 7.7e-33 144.8 193 47.7
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.0e-32 144.4 180 50.0
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 1.7e-32 143.7 207 45.9
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 3.8e-32 142.5 202 45.0
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 5.0e-32 142.1 191 47.1
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.1e-31 141.0 186 48.4
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 2.5e-31 139.8 204 45.1
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 3.2e-31 139.4 198 45.5
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 3.2e-31 139.4 198 45.5
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 5.5e-31 138.7 190 44.7
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 7.2e-31 138.3 178 47.2
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 9.4e-31 137.9 178 46.6
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 9.4e-31 137.9 178 46.6
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 1.2e-30 137.5 193 45.1
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 2.7e-30 136.3 178 46.6
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 3.6e-30 136.0 180 47.2
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 3.6e-30 136.0 181 44.8
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 7.9e-30 134.8 184 47.3
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 1.0e-29 134.4 181 48.6
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 2.3e-29 133.3 192 46.9
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 3.0e-29 132.9 177 46.3
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 3.9e-29 132.5 185 44.9
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 6.7e-29 131.7 178 44.4
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 2.6e-28 129.8 192 43.2
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 1.3e-27 127.5 211 41.7
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.2e-27 126.7 198 41.9
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 8.2e-27 124.8 187 43.3
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 1.1e-26 124.4 195 43.6
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 1.4e-26 124.0 183 42.1
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 3.1e-26 122.9 193 42.5
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 1.5e-25 120.6 197 38.6
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 2.6e-25 119.8 154 48.7
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 2.6e-25 119.8 154 48.7
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 2.6e-25 119.8 195 41.5
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 3.4e-25 119.4 178 42.1
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 4.5e-25 119.0 201 40.3
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 7.7e-25 118.2 207 38.6
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 7.7e-25 118.2 126 54.0
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 1.0e-24 117.9 184 40.8
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 1.3e-24 117.5 227 37.4
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 3.8e-24 115.9 207 38.2
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 5.0e-24 115.5 206 36.9
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 5.0e-24 115.5 206 36.9
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 5.0e-24 115.5 172 43.0
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 5.0e-24 115.5 180 42.8
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 1.1e-23 114.4 191 39.3
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.1e-23 114.4 196 38.3
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 4.2e-23 112.5 175 40.6
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 4.2e-23 112.5 190 38.4
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 4.2e-23 112.5 196 36.2
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 7.2e-23 111.7 188 39.9
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 1.2e-22 110.9 206 38.8
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 1.6e-22 110.5 188 40.4
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 2.1e-22 110.2 185 40.0
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 2.7e-22 109.8 154 46.1
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 2.7e-22 109.8 154 46.1
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 2.7e-22 109.8 175 41.7
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 3.6e-22 109.4 177 42.4
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 3.6e-22 109.4 173 37.0
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 3.6e-22 109.4 184 39.7
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 4.7e-22 109.0 194 36.6
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 6.1e-22 108.6 198 37.4
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 7.9e-22 108.2 177 42.9
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 7.9e-22 108.2 202 38.6
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 7.9e-22 108.2 187 37.4
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 7.9e-22 108.2 182 39.6
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 7.9e-22 108.2 182 39.6
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 1.0e-21 107.8 180 39.4
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 1.4e-21 107.5 211 35.5
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 1.8e-21 107.1 203 36.5
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.3e-21 106.7 197 37.6
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 2.3e-21 106.7 184 36.4
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 3.0e-21 106.3 142 42.3
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 3.0e-21 106.3 175 38.9
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.9e-21 105.9 200 36.5
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 5.2e-21 105.5 199 36.7
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 5.2e-21 105.5 177 38.4
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 1.1e-20 104.4 135 45.9
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 2.0e-20 103.6 204 36.3
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 2.0e-20 103.6 204 38.7
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 2.0e-20 103.6 169 41.4
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 3.3e-20 102.8 209 35.4
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 3.3e-20 102.8 182 38.5
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 3.3e-20 102.8 212 37.7
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 9.7e-20 101.3 196 37.8
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.3e-19 100.9 183 39.3
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 1.7e-19 100.5 211 33.6
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 2.2e-19 100.1 190 35.3
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 2.2e-19 100.1 194 37.6
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 3.7e-19 99.4 178 37.1
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 4.8e-19 99.0 189 35.4
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 4.8e-19 99.0 201 37.3
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 4.8e-19 99.0 161 41.0
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 8.2e-19 98.2 223 34.1
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 8.2e-19 98.2 196 36.2
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 8.2e-19 98.2 197 37.6
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 1.4e-18 97.4 174 36.2
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 1.4e-18 97.4 196 36.7
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 1.8e-18 97.1 197 38.6
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 1.8e-18 97.1 174 37.9
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 1.8e-18 97.1 191 36.6
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 2.4e-18 96.7 193 37.8
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 3.1e-18 96.3 209 32.5
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 4.1e-18 95.9 189 34.9
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 4.1e-18 95.9 210 36.7
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 5.3e-18 95.5 144 38.9
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 9.1e-18 94.7 191 36.1
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 1.2e-17 94.4 195 35.9
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.6e-17 94.0 195 37.4
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.6e-17 94.0 209 32.1
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 2.0e-17 93.6 178 38.8
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 4.5e-17 92.4 204 33.3
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 4.5e-17 92.4 236 32.2
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 4.5e-17 92.4 141 42.6
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 5.9e-17 92.0 180 35.6
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.0e-16 91.3 167 39.5
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 1.3e-16 90.9 162 37.0
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 1.7e-16 90.5 123 47.2
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 6.5e-16 88.6 176 33.0
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 8.5e-16 88.2 153 40.5
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.1e-15 87.8 197 35.0
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 1.1e-15 87.8 209 30.1
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 2.5e-15 86.7 224 30.4
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 2.5e-15 86.7 241 29.0
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 2.5e-15 86.7 191 32.5
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 3.2e-15 86.3 178 34.8
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 4.2e-15 85.9 235 31.1
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 2.1e-14 83.6 182 34.6
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 2.1e-14 83.6 136 39.7
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 6.1e-14 82.0 227 30.0
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 3.0e-13 79.7 98 53.1
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 6.7e-13 78.6 190 34.7
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 1.7e-11 73.9 152 35.5
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.4e-10 70.9 167 33.5
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 1.8e-10 70.5 126 39.7
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 9.1e-10 68.2 221 29.0
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.2e-09 67.8 155 32.9
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 7.7e-09 65.1 212 28.3
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 2.9e-08 63.2 142 33.1
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.1e-07 61.2 182 27.5
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.1e-07 61.2 166 28.9
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 1.5e-07 60.8 168 28.6
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 3.2e-07 59.7 140 30.7
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.2e-06 57.8 140 28.6


User provided reference genes

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