Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35262 Brassica carinata HOM05D003206 ORTHO05D016781 5.3e-47 190.7 94 100.0
BolC3t19546H Brassica oleracea HOM05D003206 ORTHO05D016781 5.3e-47 190.7 94 100.0
C07p18050 Brassica napus HOM05D003206 ORTHO05D016781 2.0e-46 188.7 94 98.9
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 2.2e-45 185.3 94 96.8
BcaC03g17488 Brassica carinata HOM05D003206 ORTHO05D016781 6.4e-45 183.7 94 95.7
BolC2t11510H Brassica oleracea HOM05D003206 ORTHO05D016781 6.4e-45 183.7 94 95.7
BcaC07g39914 Brassica carinata HOM05D003206 ORTHO05D005207 2.4e-44 181.8 94 94.7
A03p18490 Brassica napus HOM05D003206 ORTHO05D016781 7.1e-44 180.3 94 95.7
A09p11990 Brassica napus HOM05D003206 ORTHO05D016781 8.7e-26 120.2 61 96.7
BcaC03g15965 Brassica carinata HOM05D003206 ORTHO05D005207 1.3e-24 116.3 84 72.6
BcaC03g15966 Brassica carinata HOM05D003206 ORTHO05D005207 1.3e-24 116.3 84 72.6
BcaC08g47591 Brassica carinata HOM05D003206 ORTHO05D014283 1.6e-24 115.9 84 73.8
C06p54070 Brassica napus HOM05D003206 ORTHO05D005207 1.6e-24 115.9 84 73.8
BolC6t40420H Brassica oleracea HOM05D003206 ORTHO05D005207 1.6e-24 115.9 84 73.8
A07p45230 Brassica napus HOM05D003206 ORTHO05D005207 2.1e-24 115.5 84 73.8
BraA07t32026Z Brassica rapa HOM05D003206 ORTHO05D005207 2.1e-24 115.5 84 73.8
A02p23540 Brassica napus HOM05D003206 ORTHO05D005207 2.8e-24 115.2 84 72.6
C02p37310 Brassica napus HOM05D003206 ORTHO05D005207 2.8e-24 115.2 84 72.6
BolC2t09741H Brassica oleracea HOM05D003206 ORTHO05D005207 2.8e-24 115.2 84 72.6
BraA02t07347Z Brassica rapa HOM05D003206 ORTHO05D005207 2.8e-24 115.2 84 72.6
BcaB02g08684 Brassica carinata HOM05D003206 ORTHO05D005207 4.8e-24 114.4 84 72.6
AL2G41040 Arabidopsis lyrata HOM05D003206 ORTHO05D005207 6.2e-24 114.0 84 71.4
Carub.0002s2712 Capsella rubella HOM05D003206 ORTHO05D005207 8.2e-24 113.6 84 71.4
CARHR074790 Cardamine hirsuta HOM05D003206 ORTHO05D005207 1.4e-23 112.8 84 71.4
BcaB05g25268 Brassica carinata HOM05D003206 ORTHO05D005207 1.8e-23 112.5 84 71.4
A07p26680 Brassica napus HOM05D003206 ORTHO05D005207 1.8e-23 112.5 84 71.4
AT1G80460 Arabidopsis thaliana HOM05D003206 ORTHO05D005207 2.4e-23 112.1 84 71.4
BcaC08g45315 Brassica carinata HOM05D003206 ORTHO05D005207 5.3e-23 110.9 84 70.2
C06p29160 Brassica napus HOM05D003206 ORTHO05D005207 5.3e-23 110.9 84 70.2
BolC6t38080H Brassica oleracea HOM05D003206 ORTHO05D005207 5.3e-23 110.9 84 70.2
BraA07t30311Z Brassica rapa HOM05D003206 ORTHO05D005207 5.3e-23 110.9 84 70.2
Sp5g35360 Schrenkiella parvula HOM05D003206 ORTHO05D005207 6.9e-23 110.5 84 69.0
Lj5A75T45 Lonicera japonica HOM05D003206 ORTHO05D005207 9.0e-23 110.2 84 69.0
BcaB02g07269 Brassica carinata HOM05D003206 ORTHO05D005207 1.5e-22 109.4 84 70.2
Thecc.06G031800 Theobroma cacao HOM05D003206 ORTHO05D005207 4.5e-22 107.8 91 61.5
Aa31LG4G720 Aethionema arabicum HOM05D003206 ORTHO05D005207 7.6e-22 107.1 84 67.9
CSS0015374 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D005207 7.6e-22 107.1 84 65.5
Eucgr.F03908 Eucalyptus grandis HOM05D003206 ORTHO05D005207 7.6e-22 107.1 84 66.7
Actinidia18218 Actinidia chinensis HOM05D003206 ORTHO05D005207 1.0e-21 106.7 89 62.9
Hma1.2p1_0461F.1_g157780 Hydrangea macrophylla HOM05D003206 ORTHO05D005207 1.0e-21 106.7 71 77.5
CAN.G407.13 Capsicum annuum HOM05D003206 ORTHO05D005207 1.3e-21 106.3 102 54.9
COL.COLO4_11866 Corchorus olitorius HOM05D003206 ORTHO05D005207 1.3e-21 106.3 102 53.9
Duzib160G0518 Durio zibethinus HOM05D003206 ORTHO05D005207 1.3e-21 106.3 84 65.5
Migut.I00744 Erythranthe guttata HOM05D003206 ORTHO05D005207 1.3e-21 106.3 101 57.4
RcHm_v2.0_Chr2g0134571 Rosa chinensis HOM05D003206 ORTHO05D005207 1.3e-21 106.3 89 62.9
Cfa001939 Carpinus fangiana HOM05D003206 ORTHO05D005207 1.7e-21 105.9 99 56.6
CiPaw.01G250100 Carya illinoinensis HOM05D003206 ORTHO05D005207 1.7e-21 105.9 91 59.3
vmacro19016 Vaccinium macrocarpon HOM05D003206 ORTHO05D005207 1.7e-21 105.9 84 65.5
ClCG09G003080 Citrullus lanatus HOM05D003206 ORTHO05D005207 2.2e-21 105.5 71 76.1
MELO3C023442.2 Cucumis melo HOM05D003206 ORTHO05D005207 2.2e-21 105.5 71 76.1
CsaV3_7G032210 Cucumis sativus L. HOM05D003206 ORTHO05D005207 2.2e-21 105.5 71 76.1
Rhsim08G0211000 Rhododendron simsii HOM05D003206 ORTHO05D005207 2.2e-21 105.5 71 76.1
Cc04_g04590 Coffea canephora HOM05D003206 ORTHO05D005207 2.9e-21 105.1 71 76.1
Dinv30630 Davidia involucrata HOM05D003206 ORTHO05D005207 2.9e-21 105.1 84 64.3
FvH4_6g29330 Fragaria vesca HOM05D003206 ORTHO05D005207 2.9e-21 105.1 89 61.8
FAN02G2065 Fragaria x ananassa HOM05D003206 ORTHO05D005207 2.9e-21 105.1 89 61.8
FAN02G2439 Fragaria x ananassa HOM05D003206 ORTHO05D005207 2.9e-21 105.1 89 61.8
FAN05G2875 Fragaria x ananassa HOM05D003206 ORTHO05D005207 2.9e-21 105.1 89 61.8
FAN09G0310 Fragaria x ananassa HOM05D003206 ORTHO05D005207 2.9e-21 105.1 89 61.8
FAN14G4723 Fragaria x ananassa HOM05D003206 ORTHO05D005207 2.9e-21 105.1 89 61.8
Manes.11G060045 Manihot esculenta HOM05D003206 ORTHO05D005207 2.9e-21 105.1 96 59.4
Dinv38137 Davidia involucrata HOM05D003206 ORTHO05D005207 3.8e-21 104.8 80 66.2
Nn8g39607 Nelumbo nucifera HOM05D003206 ORTHO05D005207 3.8e-21 104.8 114 51.8
Oeu004210.1 Olea europaea HOM05D003206 ORTHO05D005207 3.8e-21 104.8 84 64.3
GSVIVG01017422001 Vitis vinifera HOM05D003206 ORTHO05D005207 3.8e-21 104.8 71 76.1
Aqoxy7G02449 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 4.9e-21 104.4 71 74.6
MD09G1222300 Malus domestica HOM05D003206 ORTHO05D005207 4.9e-21 104.4 89 60.7
Gohir.A06G115200 Gossypium hirsutum HOM05D003206 ORTHO05D005207 6.5e-21 104.0 91 61.5
SalBow6G0819 Salvia bowleyana HOM05D003206 ORTHO05D005207 6.5e-21 104.0 71 76.1
TWI12G0864 Tripterygium wilfordii HOM05D003206 ORTHO05D005207 6.5e-21 104.0 68 77.9
AUR62016312 Chenopodium quinoa HOM05D003206 ORTHO05D005207 8.4e-21 103.6 102 53.9
MD17G1215600 Malus domestica HOM05D003206 ORTHO05D005207 8.4e-21 103.6 84 64.3
Sc10g0006040 Simmondsia chinensis HOM05D003206 ORTHO05D005207 8.4e-21 103.6 89 61.8
Eucgr.J03080 Eucalyptus grandis HOM05D003206 ORTHO05D005207 1.1e-20 103.2 84 65.5
Manes.11G060600 Manihot esculenta HOM05D003206 ORTHO05D005207 1.1e-20 103.2 84 63.1
Peaxi162Scf00553g00628 Petunia axillaris HOM05D003206 ORTHO05D005207 1.1e-20 103.2 102 53.9
QL05p032185 Quercus lobata HOM05D003206 ORTHO05D005207 1.1e-20 103.2 71 73.2
Hund06548 Selenicereus undatus HOM05D003206 ORTHO05D005207 1.1e-20 103.2 71 73.2
Aqoxy133s001 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 1.4e-20 102.8 91 61.5
Aqoxy7G03604 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 1.4e-20 102.8 91 61.5
EL10Ac9g21895 Beta vulgaris HOM05D003206 ORTHO05D005207 1.4e-20 102.8 102 53.9
HanXRQChr02g0034821 Helianthus annuus HOM05D003206 ORTHO05D005207 1.4e-20 102.8 84 63.1
QL05p032218 Quercus lobata HOM05D003206 ORTHO05D005207 1.4e-20 102.8 84 63.1
PGR102G2366 Punica granatum HOM05D003206 ORTHO05D005207 1.9e-20 102.4 88 60.2
Sed0019835 Sechium edule HOM05D003206 ORTHO05D005207 1.9e-20 102.4 71 74.6
Ah.01g020430 Amaranthus hybridus HOM05D003206 ORTHO05D005207 2.5e-20 102.1 71 71.8
AUR62011496 Chenopodium quinoa HOM05D003206 ORTHO05D005207 2.5e-20 102.1 89 59.6
FAN02G3805 Fragaria x ananassa HOM05D003206 ORTHO05D005207 2.5e-20 102.1 91 59.3
PSO063G0253 Papaver somniferum HOM05D003206 ORTHO05D016781 2.5e-20 102.1 88 61.4
Sabra03G0017400 Salix brachista HOM05D003206 ORTHO05D005207 2.5e-20 102.1 66 77.3
Duzib235G0619 Durio zibethinus HOM05D003206 ORTHO05D005207 4.2e-20 101.3 84 64.3
Solyc03g117490.4 Solanum lycopersicum HOM05D003206 ORTHO05D005207 4.2e-20 101.3 102 53.9
Sopen03g036390 Solanum pennellii HOM05D003206 ORTHO05D005207 4.2e-20 101.3 102 53.9
PSO017G7051 Papaver somniferum HOM05D003206 ORTHO05D005207 5.5e-20 100.9 88 61.4
PSO170G1430 Papaver somniferum HOM05D003206 ORTHO05D005207 5.5e-20 100.9 88 61.4
PGSC0003DMG400014144 Solanum tuberosum HOM05D003206 ORTHO05D005207 5.5e-20 100.9 98 55.1
Nn2g12167 Nelumbo nucifera HOM05D003206 ORTHO05D005207 7.1e-20 100.5 71 70.4
Potri.003G030900 Populus trichocarpa HOM05D003206 ORTHO05D005207 7.1e-20 100.5 66 77.3
TAR626G1759 Trochodendron aralioides HOM05D003206 ORTHO05D005207 7.1e-20 100.5 84 64.3
unitig_27.g24952 Utricularia gibba HOM05D003206 ORTHO05D002964 7.1e-20 100.5 71 71.8
MSTRG.4700 Avicennia marina HOM05D003206 ORTHO05D005207 9.3e-20 100.1 71 73.2
THA.LOC104812468 Tarenaya hassleriana HOM05D003206 ORTHO05D005207 9.3e-20 100.1 83 63.9
ECA247G4132 Erigeron canadensis HOM05D003206 ORTHO05D005207 1.2e-19 99.8 71 71.8
Glyma.07G028600 Glycine max HOM05D003206 ORTHO05D005207 1.2e-19 99.8 68 73.5
CANSAT56G2846 Cannabis sativa HOM05D003206 ORTHO05D005207 1.6e-19 99.4 84 60.7
Ciclev10025360m.g Citrus clementina HOM05D003206 ORTHO05D005207 1.6e-19 99.4 84 59.5
Gorai.010G138000 Gossypium raimondii HOM05D003206 ORTHO05D005207 1.6e-19 99.4 71 73.2
Manes.11G080700 Manihot esculenta HOM05D003206 ORTHO05D014283 1.6e-19 99.4 72 69.4
Prupe.3G091800 Prunus persica HOM05D003206 ORTHO05D005207 1.6e-19 99.4 89 59.6
SEGI_06294 Sequoiadendron giganteum HOM05D003206 ORTHO05D005207 1.6e-19 99.4 70 71.4
SGA_v2.0_scaffold5G02725 Striga asiatica HOM05D003206 ORTHO05D005207 2.1e-19 99.0 71 70.4
unitig_699.g19091 Utricularia gibba HOM05D003206 ORTHO05D005207 2.1e-19 99.0 84 58.3
Cpa.g.sc10.151 Carica papaya HOM05D003206 ORTHO05D005207 2.7e-19 98.6 89 57.3
Ca_12518_v3 Cicer arietinum L. HOM05D003206 ORTHO05D005207 2.7e-19 98.6 68 72.1
Ciclev10020202m.g Citrus clementina HOM05D003206 ORTHO05D005207 2.7e-19 98.6 82 63.4
DCAR_025524 Daucus carota HOM05D003206 ORTHO05D005207 2.7e-19 98.6 80 62.5
TPR.G12167 Trifolium pratense HOM05D003206 ORTHO05D005207 2.7e-19 98.6 97 52.6
CDE04G3165 Ceratophyllum demersum HOM05D003206 ORTHO05D005207 3.5e-19 98.2 82 62.2
Duzib192G0877 Durio zibethinus HOM05D003206 ORTHO05D005207 3.5e-19 98.2 84 61.9
Glyma.08G214200 Glycine max HOM05D003206 ORTHO05D014283 3.5e-19 98.2 96 53.1
TPR.G38649 Trifolium pratense HOM05D003206 ORTHO05D005207 3.5e-19 98.2 97 52.6
CDE02G1563 Ceratophyllum demersum HOM05D003206 ORTHO05D005207 4.6e-19 97.8 82 63.4
TAR383G0666 Trochodendron aralioides HOM05D003206 ORTHO05D005207 4.6e-19 97.8 84 61.9
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 6.0e-19 97.4 71 69.0
Nitab4.5_0003072g0120 Nicotiana tabacum HOM05D003206 ORTHO05D005207 6.0e-19 97.4 71 71.8
Nitab4.5_0004013g0050 Nicotiana tabacum HOM05D003206 ORTHO05D005207 6.0e-19 97.4 71 71.8
Lj3g0014011 Lotus japonicus HOM05D003206 ORTHO05D005207 7.9e-19 97.1 67 73.1
Haze_20327 Corylus avellana HOM05D003206 ORTHO05D005207 1.3e-18 96.3 91 57.1
Os04g0647800 Oryza sativa ssp. japonica HOM05D003206 ORTHO05D005207 1.3e-18 96.3 71 69.0
Zm00001eb068580 Zea mays HOM05D003206 ORTHO05D005207 1.3e-18 96.3 71 69.0
Ciclev10025756m.g Citrus clementina HOM05D003206 ORTHO05D005207 2.3e-18 95.5 84 58.3
SMO271G0060 Selaginella moellendorffii HOM05D003206 ORTHO05D005207 3.0e-18 95.1 86 57.0
ATR0767G098 Amborella trichopoda HOM05D003206 ORTHO05D005207 3.9e-18 94.7 79 59.5
Pp3c5_10000 Physcomitrium patens HOM05D003206 ORTHO05D005207 3.9e-18 94.7 69 69.6
MSTRG.11155 Avicennia marina HOM05D003206 ORTHO05D005207 5.1e-18 94.4 84 57.1
HPP92_026428 Vanilla planifolia HOM05D003206 ORTHO05D005207 5.1e-18 94.4 70 70.0
Medtr4g009920 Medicago truncatula HOM05D003206 ORTHO05D005207 6.7e-18 94.0 97 51.5
MBI14_g04912_MAGBIO Magnolia biondii HOM05D003206 ORTHO05D005207 8.7e-18 93.6 71 67.6
Lsat_1_v5_gn_5_8920 Lactuca sativa HOM05D003206 ORTHO05D005207 1.1e-17 93.2 91 54.9
Lsat_1_v5_gn_1_31380 Lactuca sativa HOM05D003206 ORTHO05D005207 1.5e-17 92.8 67 71.6
Psat7g257640 Pisum sativum HOM05D003206 ORTHO05D005207 1.5e-17 92.8 97 50.5
DCAR_016275 Daucus carota HOM05D003206 ORTHO05D005207 1.9e-17 92.4 80 58.8
Phvul.010G157400 Phaseolus vulgaris HOM05D003206 ORTHO05D005207 1.9e-17 92.4 69 69.6
VMungo0331G1864 Vigna mungo HOM05D003206 ORTHO05D005207 1.9e-17 92.4 93 52.7
Ciclev10024258m.g Citrus clementina HOM05D003206 ORTHO05D005207 2.5e-17 92.0 84 56.0
Lalb_Chr01g0012271 Lupinus albus HOM05D003206 ORTHO05D005207 3.3e-17 91.7 96 51.0
AagrBONN_evm.TU.Sc2ySwM_228.3101 Anthoceros agrestis HOM05D003206 ORTHO05D005207 4.3e-17 91.3 66 66.7
TAR626G0098 Trochodendron aralioides HOM05D003206 ORTHO05D005207 4.3e-17 91.3 94 54.3
Oeu018801.1 Olea europaea HOM05D003206 ORTHO05D005207 5.7e-17 90.9 114 46.5
Lalb_Chr04g0262301 Lupinus albus HOM05D003206 ORTHO05D005207 7.4e-17 90.5 66 68.2
PSO478G0299 Papaver somniferum HOM05D003206 ORTHO05D005207 9.7e-17 90.1 84 56.0
TPR.G38684 Trifolium pratense HOM05D003206 ORTHO05D005207 9.7e-17 90.1 88 53.4
GSVIVG01017394001 Vitis vinifera HOM05D003206 ORTHO05D014283 1.6e-16 89.4 50 86.0
Lalb_Chr25g0279091 Lupinus albus HOM05D003206 ORTHO05D005207 2.2e-16 89.0 86 55.8
CSS0035908 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D014283 3.7e-16 88.2 81 56.8
Oeu004214.1 Olea europaea HOM05D003206 ORTHO05D005207 8.2e-16 87.0 122 44.3
Cfa021276 Carpinus fangiana HOM05D003206 ORTHO05D014283 1.1e-15 86.7 91 53.8
arahy.Tifrunner.gnm1.ann1.GS37TA Arachis hypogaea HOM05D003206 ORTHO05D005207 2.4e-15 85.5 65 66.2
arahy.Tifrunner.gnm1.ann1.TT8CUF Arachis hypogaea HOM05D003206 ORTHO05D005207 4.1e-15 84.7 65 66.2
arahy.Tifrunner.gnm1.ann1.ZMG720 Arachis hypogaea HOM05D003206 ORTHO05D005207 4.1e-15 84.7 65 66.2
FvH4_6g29340 Fragaria vesca HOM05D003206 ORTHO05D005207 1.5e-14 82.8 70 60.0
Mapoly0004s0005 Marchantia polymorpha HOM05D003206 ORTHO05D005207 3.4e-14 81.6 69 59.4
Gohir.D06G120000 Gossypium hirsutum HOM05D003206 ORTHO05D005207 4.6e-11 71.2 71 59.2
GSVIVG01015945001 Vitis vinifera HOM05D003206 ORTHO05D014283 7.9e-11 70.5 50 76.0
CBR_g30419 Chara braunii HOM05D003206 ORTHO05D005207 3.9e-10 68.2 101 39.6
CBR_g36912 Chara braunii HOM05D003206 ORTHO05D005207 3.9e-10 68.2 101 39.6
MCO09G056 Micromonas commoda HOM05D003206 ORTHO05D005207 3.9e-10 68.2 64 51.6
Thhalv10018399m.g Eutrema salsugineum HOM05D003206 ORTHO05D005207 2.5e-09 65.5 47 72.3
PRCOL_00002221 Prasinoderma coloniale HOM05D003206 ORTHO05D005207 2.5e-09 65.5 68 54.4
Cre04.g224150 Chlamydomonas reinhardtii HOM05D003206 ORTHO05D005207 3.3e-09 65.1 68 48.5
Haze_12952 Corylus avellana HOM05D003206 ORTHO05D005207 3.7e-08 61.6 47 68.1
Actinidia03225 Actinidia chinensis HOM05D003206 ORTHO05D005207 1.4e-07 59.7 32 87.5
Pp3s42_220 Physcomitrium patens HOM05D003206 ORTHO05D310700 2.4e-07 58.9 62 50.0
Cfa003309 Carpinus fangiana HOM05D003206 ORTHO05D005207 4.1e-07 58.2 44 68.2
RcHm_v2.0_Chr2g0134741 Rosa chinensis HOM05D003206 ORTHO05D034830 4.1e-07 58.2 47 63.8
Cfa027331 Carpinus fangiana HOM05D003206 ORTHO05D122679 1.2e-06 56.6 65 44.6
Hma1.2p1_0017F.1_g011400 Hydrangea macrophylla HOM05D003206 ORTHO05D014283 2.6e-06 55.5 61 50.8


User provided reference genes

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