Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g35190 Brassica carinata HOM05D000198 ORTHO05D015907 4.4e-48 194.1 87 100.0
BcaC06g35189 Brassica carinata HOM05D000198 ORTHO05D015907 2.7e-13 78.6 36 100.0
A01p20990 Brassica napus HOM05D000198 ORTHO05D015907 2.7e-13 78.6 36 100.0
BolC3t21093H Brassica oleracea HOM05D000198 ORTHO05D015907 2.7e-13 78.6 36 100.0
BolC9t53471H Brassica oleracea HOM05D000198 ORTHO05D015907 7.8e-13 77.0 36 97.2
BolC3t20328H Brassica oleracea HOM05D000198 ORTHO05D015907 2.3e-12 75.5 36 97.2
A06p27400 Brassica napus HOM05D000198 ORTHO05D000763 2.1e-10 68.9 36 83.3
Sp5g13980 Schrenkiella parvula HOM05D000198 ORTHO05D000763 2.1e-10 68.9 36 83.3
BraA06t25675Z Brassica rapa HOM05D000198 ORTHO05D000763 2.8e-10 68.6 36 80.6
BcaC01g02302 Brassica carinata HOM05D000198 ORTHO05D000763 3.6e-10 68.2 36 83.3
C03p66850 Brassica napus HOM05D000198 ORTHO05D000763 3.6e-10 68.2 36 83.3
BolC3t18953H Brassica oleracea HOM05D000198 ORTHO05D000763 3.6e-10 68.2 36 83.3
BcaB02g10674 Brassica carinata HOM05D000198 ORTHO05D000763 4.8e-10 67.8 36 80.6
Thhalv10010271m.g Eutrema salsugineum HOM05D000198 ORTHO05D000763 1.4e-09 66.2 36 77.8
BcaB01g00853 Brassica carinata HOM05D000198 ORTHO05D000763 1.8e-09 65.9 36 80.6
Aa31LG4G16640 Aethionema arabicum HOM05D000198 ORTHO05D000763 3.1e-09 65.1 36 77.8
BcaC07g39285 Brassica carinata HOM05D000198 ORTHO05D000763 4.0e-09 64.7 36 77.8
A06p19640 Brassica napus HOM05D000198 ORTHO05D000763 4.0e-09 64.7 36 77.8
C08p22920 Brassica napus HOM05D000198 ORTHO05D000763 4.0e-09 64.7 36 77.8
BolC8t49930H Brassica oleracea HOM05D000198 ORTHO05D000763 4.0e-09 64.7 36 77.8
BraA06t25044Z Brassica rapa HOM05D000198 ORTHO05D000763 4.0e-09 64.7 36 77.8
MD06G1177200 Malus domestica HOM05D000198 ORTHO05D000763 4.0e-09 64.7 36 77.8
MD14G1183400 Malus domestica HOM05D000198 ORTHO05D000763 1.5e-08 62.8 36 75.0
CARHR156720 Cardamine hirsuta HOM05D000198 ORTHO05D000763 2.0e-08 62.4 36 72.2
AL1G60700 Arabidopsis lyrata HOM05D000198 ORTHO05D015907 4.4e-08 61.2 36 69.4
AL5G27320 Arabidopsis lyrata HOM05D000198 ORTHO05D000763 4.4e-08 61.2 36 69.4
AL7G34110 Arabidopsis lyrata HOM05D000198 ORTHO05D015907 4.4e-08 61.2 36 69.4
CiPaw.11G028600 Carya illinoinensis HOM05D000198 ORTHO05D000763 4.4e-08 61.2 36 72.2
THA.LOC104818230 Tarenaya hassleriana HOM05D000198 ORTHO05D000763 4.4e-08 61.2 36 72.2
Lju41A34T46 Lonicera japonica HOM05D000198 ORTHO05D000763 7.6e-08 60.5 36 69.4
AT3G48000 Arabidopsis thaliana HOM05D000198 ORTHO05D000763 9.9e-08 60.1 36 69.4
Carub.0005s1411 Capsella rubella HOM05D000198 ORTHO05D000763 1.7e-07 59.3 36 66.7
TAR629G0036 Trochodendron aralioides HOM05D000198 ORTHO05D000763 1.7e-07 59.3 36 69.4
COL.COLO4_34055 Corchorus olitorius HOM05D000198 ORTHO05D000763 2.2e-07 58.9 36 69.4
Dinv35047 Davidia involucrata HOM05D000198 ORTHO05D015907 2.2e-07 58.9 36 66.7
Cc04_g12820 Coffea canephora HOM05D000198 ORTHO05D000763 2.9e-07 58.5 36 66.7
FAN17G2727 Fragaria x ananassa HOM05D000198 ORTHO05D000763 2.9e-07 58.5 36 66.7
Glyma.13G170600 Glycine max HOM05D000198 ORTHO05D000763 2.9e-07 58.5 36 66.7
Lj2g0003598 Lotus japonicus HOM05D000198 ORTHO05D000763 2.9e-07 58.5 36 66.7
Prupe.5G175900 Prunus persica HOM05D000198 ORTHO05D000763 2.9e-07 58.5 36 72.2
Sopen02g031750 Solanum pennellii HOM05D000198 ORTHO05D015907 2.9e-07 58.5 36 69.4
Glyma.19G010833 Glycine max HOM05D000198 ORTHO05D015907 3.8e-07 58.2 36 66.7
Lsat_1_v5_gn_4_74900 Lactuca sativa HOM05D000198 ORTHO05D000763 3.8e-07 58.2 36 63.9
TWI60G0508 Tripterygium wilfordii HOM05D000198 ORTHO05D000763 3.8e-07 58.2 36 66.7
Duzib268G0724 Durio zibethinus HOM05D000198 ORTHO05D000763 4.9e-07 57.8 36 63.9
RcHm_v2.0_Chr4g0444001 Rosa chinensis HOM05D000198 ORTHO05D000763 4.9e-07 57.8 36 66.7
CSS0044091 Camellia sinensis var. sinensis HOM05D000198 ORTHO05D000763 6.4e-07 57.4 36 63.9
CAN.G206.39 Capsicum annuum HOM05D000198 ORTHO05D000763 6.4e-07 57.4 36 66.7
FAN07G1949 Fragaria x ananassa HOM05D000198 ORTHO05D000763 6.4e-07 57.4 36 63.9
FAN12G2185 Fragaria x ananassa HOM05D000198 ORTHO05D000763 6.4e-07 57.4 36 63.9
FAN12G3033 Fragaria x ananassa HOM05D000198 ORTHO05D000763 6.4e-07 57.4 36 63.9
FAN22G0947 Fragaria x ananassa HOM05D000198 ORTHO05D000763 6.4e-07 57.4 36 63.9
MD13G1090800 Malus domestica HOM05D000198 ORTHO05D000763 6.4e-07 57.4 36 61.1
TAR622G0988 Trochodendron aralioides HOM05D000198 ORTHO05D000763 6.4e-07 57.4 36 66.7
TAR622G1296 Trochodendron aralioides HOM05D000198 ORTHO05D000763 6.4e-07 57.4 36 66.7
HPP92_015307 Vanilla planifolia HOM05D000198 ORTHO05D000763 6.4e-07 57.4 36 63.9
Cpa.g.sc124.36 Carica papaya HOM05D000198 ORTHO05D000763 8.4e-07 57.0 36 61.1
Lj4g0020657 Lotus japonicus HOM05D000198 ORTHO05D000763 8.4e-07 57.0 36 63.9
Nitab4.5_0007879g0030 Nicotiana tabacum HOM05D000198 ORTHO05D000763 8.4e-07 57.0 36 66.7
A08p28010 Brassica napus HOM05D000198 ORTHO05D000763 1.1e-06 56.6 36 61.1
BraA08t34731Z Brassica rapa HOM05D000198 ORTHO05D000763 1.1e-06 56.6 36 61.1
AUR62005363 Chenopodium quinoa HOM05D000198 ORTHO05D000763 1.1e-06 56.6 36 63.9
AUR62014018 Chenopodium quinoa HOM05D000198 ORTHO05D000763 1.1e-06 56.6 36 63.9
FAN12G3653 Fragaria x ananassa HOM05D000198 ORTHO05D000763 1.1e-06 56.6 36 61.1
Nn3g16913 Nelumbo nucifera HOM05D000198 ORTHO05D000763 1.1e-06 56.6 36 63.9
THA.LOC104822963 Tarenaya hassleriana HOM05D000198 ORTHO05D000763 1.1e-06 56.6 36 61.1
VMungo0016G0001 Vigna mungo HOM05D000198 ORTHO05D000763 1.1e-06 56.6 36 63.9
AT1G23800 Arabidopsis thaliana HOM05D000198 ORTHO05D000763 1.4e-06 56.2 36 61.1
arahy.Tifrunner.gnm1.ann1.3CBS5R Arachis hypogaea HOM05D000198 ORTHO05D000763 1.4e-06 56.2 36 63.9
arahy.Tifrunner.gnm1.ann1.ZMIE54 Arachis hypogaea HOM05D000198 ORTHO05D000763 1.4e-06 56.2 36 63.9
BcaB03g11955 Brassica carinata HOM05D000198 ORTHO05D000763 1.4e-06 56.2 36 61.1
BcaC07g39215 Brassica carinata HOM05D000198 ORTHO05D000763 1.4e-06 56.2 36 61.1
C08p22110 Brassica napus HOM05D000198 ORTHO05D000763 1.4e-06 56.2 36 61.1
BolC8t49856H Brassica oleracea HOM05D000198 ORTHO05D000763 1.4e-06 56.2 36 61.1
Duzib268G1485 Durio zibethinus HOM05D000198 ORTHO05D000763 1.4e-06 56.2 36 61.1
Eucgr.K02858 Eucalyptus grandis HOM05D000198 ORTHO05D000763 1.4e-06 56.2 36 66.7
Thhalv10007303m.g Eutrema salsugineum HOM05D000198 ORTHO05D000763 1.4e-06 56.2 36 61.1
FvH4_4g34660 Fragaria vesca HOM05D000198 ORTHO05D000763 1.4e-06 56.2 35 62.9
Glyma.01G031500 Glycine max HOM05D000198 ORTHO05D000763 1.4e-06 56.2 36 63.9
Lj4g0002511 Lotus japonicus HOM05D000198 ORTHO05D000763 1.4e-06 56.2 36 61.1
MBI15_g31112_MAGBIO Magnolia biondii HOM05D000198 ORTHO05D000763 1.4e-06 56.2 36 58.3
PSO386G0240 Papaver somniferum HOM05D000198 ORTHO05D000763 1.4e-06 56.2 36 61.1
Phvul.004G018000 Phaseolus vulgaris HOM05D000198 ORTHO05D000763 1.4e-06 56.2 36 63.9
PGR083G0871 Punica granatum HOM05D000198 ORTHO05D000763 1.4e-06 56.2 36 63.9
QL03p061629 Quercus lobata HOM05D000198 ORTHO05D000763 1.4e-06 56.2 36 63.9
SHI27186 Sapria himalayana HOM05D000198 ORTHO05D000763 1.4e-06 56.2 36 61.1
ATR0691G005 Amborella trichopoda HOM05D000198 ORTHO05D000763 1.9e-06 55.8 36 63.9
AL1G37560 Arabidopsis lyrata HOM05D000198 ORTHO05D000763 1.9e-06 55.8 36 61.1
BcaC05g26290 Brassica carinata HOM05D000198 ORTHO05D000763 1.9e-06 55.8 36 61.1
A09p41020 Brassica napus HOM05D000198 ORTHO05D000763 1.9e-06 55.8 36 61.1
C05p22980 Brassica napus HOM05D000198 ORTHO05D000763 1.9e-06 55.8 36 61.1
BolC5t30997H Brassica oleracea HOM05D000198 ORTHO05D000763 1.9e-06 55.8 36 61.1
BraA09t39595Z Brassica rapa HOM05D000198 ORTHO05D000763 1.9e-06 55.8 36 61.1
Carub.0001s2331 Capsella rubella HOM05D000198 ORTHO05D000763 1.9e-06 55.8 36 61.1
Cpa.g.sc69.12 Carica papaya HOM05D000198 ORTHO05D000763 1.9e-06 55.8 36 61.1
Cfa007440 Carpinus fangiana HOM05D000198 ORTHO05D000763 1.9e-06 55.8 36 61.1
Duzib248G0319 Durio zibethinus HOM05D000198 ORTHO05D000763 1.9e-06 55.8 36 61.1
MD13G1090600 Malus domestica HOM05D000198 ORTHO05D000763 1.9e-06 55.8 36 58.3
Glyma.02G034000 Glycine max HOM05D000198 ORTHO05D000763 2.4e-06 55.5 36 63.9
Manes.12G030100 Manihot esculenta HOM05D000198 ORTHO05D000763 2.4e-06 55.5 36 58.3
Medtr8g064170 Medicago truncatula HOM05D000198 ORTHO05D000763 2.4e-06 55.5 36 61.1
PSO421G0060 Papaver somniferum HOM05D000198 ORTHO05D000763 2.4e-06 55.5 36 61.1
Phvul.003G052500 Phaseolus vulgaris HOM05D000198 ORTHO05D000763 2.4e-06 55.5 36 61.1
Sabra02G0165700 Salix brachista HOM05D000198 ORTHO05D000763 2.4e-06 55.5 36 61.1
Sed0026181 Sechium edule HOM05D000198 ORTHO05D000763 2.4e-06 55.5 34 64.7
THA.LOC104822138 Tarenaya hassleriana HOM05D000198 ORTHO05D000763 2.4e-06 55.5 36 58.3
Thecc.02G244400 Theobroma cacao HOM05D000198 ORTHO05D000763 2.4e-06 55.5 36 61.1
TPR.G32098 Trifolium pratense HOM05D000198 ORTHO05D000763 2.4e-06 55.5 36 61.1
vmacro01184 Vaccinium macrocarpon HOM05D000198 ORTHO05D000763 2.4e-06 55.5 36 58.3
Actinidia01707 Actinidia chinensis HOM05D000198 ORTHO05D000763 3.2e-06 55.1 36 58.3
Actinidia27783 Actinidia chinensis HOM05D000198 ORTHO05D000763 3.2e-06 55.1 36 58.3
Aqoxy3G01001 Aquilegia oxysepala HOM05D000198 ORTHO05D000763 3.2e-06 55.1 36 63.9
ClCG02G016660 Citrullus lanatus HOM05D000198 ORTHO05D000763 3.2e-06 55.1 42 52.4
CsaV3_2G004110 Cucumis sativus L. HOM05D000198 ORTHO05D000763 3.2e-06 55.1 35 62.9
ECA232G1402 Erigeron canadensis HOM05D000198 ORTHO05D000763 3.2e-06 55.1 36 61.1
Glyma.17G091000 Glycine max HOM05D000198 ORTHO05D000763 3.2e-06 55.1 36 61.1
Hma1.2p1_0802F.1_g220550 Hydrangea macrophylla HOM05D000198 ORTHO05D000763 3.2e-06 55.1 36 61.1
Hma1.2p1_0967F.1_g242275 Hydrangea macrophylla HOM05D000198 ORTHO05D000763 3.2e-06 55.1 36 61.1
Prupe.1G255200 Prunus persica HOM05D000198 ORTHO05D000763 3.2e-06 55.1 36 55.6
Rhsim12G0047500 Rhododendron simsii HOM05D000198 ORTHO05D000763 3.2e-06 55.1 36 58.3
Sp1g21180 Schrenkiella parvula HOM05D000198 ORTHO05D000763 3.2e-06 55.1 36 58.3
unitig_8.g3168 Utricularia gibba HOM05D000198 ORTHO05D000763 3.2e-06 55.1 36 58.3
Zm00001eb380260 Zea mays HOM05D000198 ORTHO05D000763 3.2e-06 55.1 36 61.1
Actinidia33055 Actinidia chinensis HOM05D000198 ORTHO05D000763 4.2e-06 54.7 36 58.3
EL10Ac6g13661 Beta vulgaris HOM05D000198 ORTHO05D000763 4.2e-06 54.7 36 61.1
CiPaw.06G072400 Carya illinoinensis HOM05D000198 ORTHO05D000763 4.2e-06 54.7 36 61.1
MELO3C004383.2 Cucumis melo HOM05D000198 ORTHO05D000763 4.2e-06 54.7 35 60.0
Duzib147G1523 Durio zibethinus HOM05D000198 ORTHO05D000763 4.2e-06 54.7 36 61.1
Glyma.08G288000 Glycine max HOM05D000198 ORTHO05D000763 4.2e-06 54.7 36 61.1
Glyma.18G137300 Glycine max HOM05D000198 ORTHO05D000763 4.2e-06 54.7 36 61.1
RcHm_v2.0_Chr7g0193841 Rosa chinensis HOM05D000198 ORTHO05D000763 4.2e-06 54.7 36 61.1
Ah.02g110430 Amaranthus hybridus HOM05D000198 ORTHO05D000763 5.4e-06 54.3 36 61.1
CDE02G0636 Ceratophyllum demersum HOM05D000198 ORTHO05D000763 5.4e-06 54.3 36 63.9
DCAR_011215 Daucus carota HOM05D000198 ORTHO05D000763 5.4e-06 54.3 36 66.7
Eucgr.B00357 Eucalyptus grandis HOM05D000198 ORTHO05D000763 5.4e-06 54.3 36 61.1
Gohir.A07G219300 Gossypium hirsutum HOM05D000198 ORTHO05D000763 5.4e-06 54.3 36 61.1
Gohir.D07G226200 Gossypium hirsutum HOM05D000198 ORTHO05D000763 5.4e-06 54.3 36 61.1
MBI14_g36187_MAGBIO Magnolia biondii HOM05D000198 ORTHO05D000763 5.4e-06 54.3 36 58.3
Oeu028912.1 Olea europaea HOM05D000198 ORTHO05D000763 5.4e-06 54.3 36 58.3
arahy.Tifrunner.gnm1.ann1.8CP0UI Arachis hypogaea HOM05D000198 ORTHO05D000763 7.1e-06 53.9 36 61.1
arahy.Tifrunner.gnm1.ann1.STWC1J Arachis hypogaea HOM05D000198 ORTHO05D000763 7.1e-06 53.9 36 61.1
CSS0009162 Camellia sinensis var. sinensis HOM05D000198 ORTHO05D000763 7.1e-06 53.9 34 64.7
Cfa019095 Carpinus fangiana HOM05D000198 ORTHO05D000763 7.1e-06 53.9 36 58.3
Duzib251G0921 Durio zibethinus HOM05D000198 ORTHO05D000763 7.1e-06 53.9 36 58.3
Migut.I00031 Erythranthe guttata HOM05D000198 ORTHO05D000763 7.1e-06 53.9 36 58.3
Lj5A122T99 Lonicera japonica HOM05D000198 ORTHO05D000763 7.1e-06 53.9 36 61.1
Lalb_Chr16g0382311 Lupinus albus HOM05D000198 ORTHO05D000763 7.1e-06 53.9 36 58.3
Psat4g125120 Pisum sativum HOM05D000198 ORTHO05D000763 7.1e-06 53.9 36 58.3
Hund05988 Selenicereus undatus HOM05D000198 ORTHO05D000763 7.1e-06 53.9 36 58.3
SGA_v2.0_scaffold165G38255 Striga asiatica HOM05D000198 ORTHO05D000763 7.1e-06 53.9 36 55.6
TAR374G1418 Trochodendron aralioides HOM05D000198 ORTHO05D000763 7.1e-06 53.9 34 64.7
VMungo0251G2184 Vigna mungo HOM05D000198 ORTHO05D000763 7.1e-06 53.9 36 58.3
GSVIVG01007784001 Vitis vinifera HOM05D000198 ORTHO05D000763 7.1e-06 53.9 36 58.3
Aa31LG7G7680 Aethionema arabicum HOM05D000198 ORTHO05D000763 9.3e-06 53.5 35 57.1
Ah.03g132600 Amaranthus hybridus HOM05D000198 ORTHO05D000763 9.3e-06 53.5 36 58.3
MSTRG.7890 Avicennia marina HOM05D000198 ORTHO05D000763 9.3e-06 53.5 36 55.6
CSS0003337 Camellia sinensis var. sinensis HOM05D000198 ORTHO05D000763 9.3e-06 53.5 36 55.6
CSS0008899 Camellia sinensis var. sinensis HOM05D000198 ORTHO05D000763 9.3e-06 53.5 36 55.6
CANSAT80G2212 Cannabis sativa HOM05D000198 ORTHO05D000763 9.3e-06 53.5 36 55.6
CiPaw.05G149800 Carya illinoinensis HOM05D000198 ORTHO05D000763 9.3e-06 53.5 36 58.3
CDE05G3066 Ceratophyllum demersum HOM05D000198 ORTHO05D000763 9.3e-06 53.5 36 58.3
AUR62002697 Chenopodium quinoa HOM05D000826 ORTHO05D006448 9.3e-06 53.5 36 58.3
AUR62005362 Chenopodium quinoa HOM05D000198 ORTHO05D000763 9.3e-06 53.5 36 58.3
AUR62008237 Chenopodium quinoa HOM05D000198 ORTHO05D000763 9.3e-06 53.5 36 58.3
AUR62014017 Chenopodium quinoa HOM05D000198 ORTHO05D000763 9.3e-06 53.5 36 58.3
Dinv09158 Davidia involucrata HOM05D000198 ORTHO05D000763 9.3e-06 53.5 36 58.3
Migut.E00158 Erythranthe guttata HOM05D000198 ORTHO05D000763 9.3e-06 53.5 35 57.1
FAN13G2064 Fragaria x ananassa HOM05D000198 ORTHO05D000763 9.3e-06 53.5 36 61.1
Glyma.06G183900 Glycine max HOM05D000198 ORTHO05D000763 9.3e-06 53.5 36 58.3
Gohir.A12G142400 Gossypium hirsutum HOM05D000198 ORTHO05D000763 9.3e-06 53.5 36 58.3
Gohir.D12G147300 Gossypium hirsutum HOM05D000198 ORTHO05D000763 9.3e-06 53.5 36 58.3
Gorai.008G158500 Gossypium raimondii HOM05D000198 ORTHO05D000763 9.3e-06 53.5 36 58.3
Manes.13G031200 Manihot esculenta HOM05D000198 ORTHO05D000763 9.3e-06 53.5 36 55.6
PSO063G2090 Papaver somniferum HOM05D000198 ORTHO05D000763 9.3e-06 53.5 36 55.6
Potri.002G189900 Populus trichocarpa HOM05D000198 ORTHO05D000763 9.3e-06 53.5 36 58.3
PGR102G2452 Punica granatum HOM05D000198 ORTHO05D000763 9.3e-06 53.5 36 55.6
SalBow2G2247 Salvia bowleyana HOM05D000198 ORTHO05D000763 9.3e-06 53.5 36 55.6
SalBow5G5691 Salvia bowleyana HOM05D000198 ORTHO05D000763 9.3e-06 53.5 36 58.3
TWI36G1492 Tripterygium wilfordii HOM05D000198 ORTHO05D000763 9.3e-06 53.5 36 58.3
unitig_22.g6466 Utricularia gibba HOM05D000198 ORTHO05D000763 9.3e-06 53.5 36 55.6
HPP92_019888 Vanilla planifolia HOM05D000198 ORTHO05D000763 9.3e-06 53.5 36 58.3


User provided reference genes

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